Genetic variants and risk of esophageal squamous cell carcinoma: A GWAS-based pathway analysis

Gene

Volumn 556, Issue 2, 2015, Pages 149-152

  Yang, Xi ^a   Zhu, Hongcheng ^a   Qin, Qin ^a   Yang, Yuehua ^a   Yang, Yan ^a   Cheng, Hongyan ^a   Sun, Xinchen ^a  

^a THE FIRST AFFILIATED HOSPITAL OF NANJING MEDICAL UNIVERSITY   (China)

Author keywords

Esophageal squamous cell carcinoma; Genome wide association study; Pathway analysis

Indexed keywords

MONOSACCHARIDE;

ARTICLE; CANCER RISK; CANCER SUSCEPTIBILITY; CHINESE; CONTROLLED STUDY; ESOPHAGEAL SQUAMOUS CELL CARCINOMA; EXCISION REPAIR; GENETIC ASSOCIATION; GENETIC RISK; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; SINGLE NUCLEOTIDE POLYMORPHISM; ASIAN CONTINENTAL ANCESTRY GROUP; ESOPHAGUS TUMOR; GENE LINKAGE DISEQUILIBRIUM; GENETIC PREDISPOSITION; GENETICS; METABOLISM; PROCEDURES; SQUAMOUS CELL CARCINOMA;

ASIAN CONTINENTAL ANCESTRY GROUP; CARCINOMA, SQUAMOUS CELL; ESOPHAGEAL NEOPLASMS; GENETIC PREDISPOSITION TO DISEASE; GENETIC VARIATION; GENOME-WIDE ASSOCIATION STUDY; HUMANS; LINKAGE DISEQUILIBRIUM; METABOLIC NETWORKS AND PATHWAYS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84919703779     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.11.049     Document Type: Article

References (17)

1. Ge Y.Z., Xu Z., Xu L.W., Yu P., Zhao Y., Xin H., Wu R., Tan S.J., Song Q., Wu J.P., Li W.C., Zhu J.G., Jia R.P. Pathway analysis of genome-wide association study on serum prostate-specific antigen levels. Gene 2014, 551:86-91.
2. Guo Q., Dai S.B., Shen F., Yu D., Shen S.T., Zhang Q., Huang J.X., Wu Z.D. VEGF +405G/C (rs2010963) polymorphisms and digestive system cancer risk: a meta-analysis. Tumour Biol. 2014, 35:4977-4982.
3. Jia Y., Nie F., Du A., Chen Z., Qin Y., Huang T., Song X., Li L. Thymine DNA glycosylase promotes transactivation of beta-catenin/TCFs by cooperating with CBP. J. Mol. Cell Biol. 2014, 6:231-239.
4. Kamangar F., Dores G.M., Anderson W.F. Patterns of cancer incidence, mortality, and prevalence across five continents: defining priorities to reduce cancer disparities in different geographic regions of the world. J. Clin. Oncol. 2006, 24:2137-2150.
5. Lee Y.H., Bae S.C., Choi S.J., Ji J.D., Song G.G. Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis. Mol. Biol. Rep. 2012, 39:10627-10635.
6. Lee Y.H., Kim J.H., Song G.G. Genome-wide pathway analysis in neuroblastoma. Tumour Biol. 2014, 35:3471-3485.
7. Li W.Q., Hu N., Hyland P.L., Gao Y., Wang Z.M., Yu K., Su H., Wang C.Y., Wang L.M., Chanock S.J., Burdett L., Ding T., Qiao Y.L., Fan J.H., Wang Y., Xu Y., Shi J.X., Gu F., Wheeler W., Xiong X.Q., Giffen C., Tucker M.A., Dawsey S.M., Freedman N.D., Abnet C.C., Goldstein A.M., Taylor P.R. Genetic variants in DNA repair pathway genes and risk of esophageal squamous cell carcinoma and gastric adenocarcinoma in a Chinese population. Carcinogenesis 2013, 34:1536-1542.
8. Michaud D.S., Siddiq A., Cox D.G., Backes D.M., Calboli F.C., Sughrue M.E., Gaziano J.M., Ma J., Stampfer M., Tworoger S.S., Hunter D.J., Camargo C.A., Parsa A.T. Mannose-binding lectin 2 gene and risk of adult glioma. PLoS One 2013, 8:e61117.
9. Swierzko A.S., Szala A., Sawicki S., Szemraj J., Sniadecki M., Sokolowska A., Kaluzynski A., Wydra D., Cedzynski M. Mannose-Binding Lectin (MBL) and MBL-associated serine protease-2 (MASP-2) in women with malignant and benign ovarian tumours. Cancer Immunol. Immunother. 2014, 63(11):1129-1140.
10. te Poele E.M., Siedlinski M., Anne de Pagter P.J., Bierings M.B., Scherpen F.J., Meeuwsen-de Boer T.G., Koppelman G.H., Postma D.S., Kamps W.A., Boezen H.M., de Bont E.S. MBL2 and fever during neutropenia in children with acute lymphoblastic leukaemia. Br. J. Haematol. 2012, 157:132-135.
11. Wang K., Li M., Hakonarson H. Analysing biological pathways in genome-wide association studies. Nat. Rev. Genet. 2010, 11:843-854.
12. Wang A.H., Liu Y., Wang B., He Y.X., Fang Y.X., Yan Y.P. Epidemiological studies of esophageal cancer in the era of genome-wide association studies. World J. Gastrointest. Pathophysiol. 2014, 5:335-343.
13. Xu L., Zhou X., Xu L., Yin R. Survivin rs9904341 (G>C) polymorphism contributes to cancer risk: an updated meta-analysis of 26 studies. Tumour Biol. 2014, 35:1661-1669.
14. Xu X., Yu T., Shi J., Chen X., Zhang W., Lin T., Liu Z., Wang Y., Zeng Z., Wang C., Li M., Liu C. Thymine DNA glycosylase is a positive regulator of Wnt signaling in colorectal cancer. J. Biol. Chem. 2014, 289:8881-8890.
15. Yang X., Zhang C., Zhu H.C., Qin Q., Zhao L.J., Liu J., Xu L.P., Zhang Q., Cai J., Ma J.X., Cheng H.Y., Sun X.C. HIF-1alpha P582S and A588T polymorphisms and digestive system cancer risk-a meta-analysis. Tumour Biol. 2014, 35:2825-2830.
16. Zhang K., Chang S., Cui S., Guo L., Zhang L., Wang J. ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework. Nucleic Acids Res. 2011, 39:W437-W443.
17. Zhu H.C., Yang X., Xu L.P., Zhao L.J., Tao G.Z., Zhang C., Qin Q., Cai J., Ma J.X., Mao W.D., Zhang X.Z., Cheng H.Y., Sun X.C. Meat consumption is associated with esophageal cancer risk in a meat- and cancer-histological-type dependent manner. Dig. Dis. Sci. 2014, 59:664-673.