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Volumn 13, Issue , 2015, Pages 221-225

Scraping the bottom of the barrel: Are rare high throughput sequences artifacts?

Author keywords

Fungi; High throughput sequencing; Rare biosphere; Singleton

Indexed keywords

FUNGI; OTUS;

EID: 84919639301     PISSN: 17545048     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funeco.2014.08.006     Document Type: Article
Times cited : (191)

References (27)
  • 2
    • 84900322856 scopus 로고    scopus 로고
    • Analyses of ITS and LSU gene regions provide congruent results on fungal community responses
    • Brown S.P., Rigdon-Huss A.R., Jumpponen A. Analyses of ITS and LSU gene regions provide congruent results on fungal community responses. Fungal Ecology 2014, 9:65-68.
    • (2014) Fungal Ecology , vol.9 , pp. 65-68
    • Brown, S.P.1    Rigdon-Huss, A.R.2    Jumpponen, A.3
  • 3
    • 70349482733 scopus 로고    scopus 로고
    • 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
    • Buée M., Reich M., Murat C., Morin E., Nilsson R.H., Uroz S., Martin F. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist 2009, 184:449-456.
    • (2009) New Phytologist , vol.184 , pp. 449-456
    • Buée, M.1    Reich, M.2    Murat, C.3    Morin, E.4    Nilsson, R.H.5    Uroz, S.6    Martin, F.7
  • 5
    • 0026207466 scopus 로고
    • DNA polymerase fidelity and the polymerase chain reaction
    • Eckert K.A., Kunkel T.A. DNA polymerase fidelity and the polymerase chain reaction. Genome Research 1991, 1:17-24.
    • (1991) Genome Research , vol.1 , pp. 17-24
    • Eckert, K.A.1    Kunkel, T.A.2
  • 7
    • 84879414990 scopus 로고    scopus 로고
    • Topographic diversity of fungal and bacterial communities in human skin
    • NIH Intramural Sequencing Center Comparative Sequencing Program
    • Findley K., Oh J., Yang J., Conlan S., Deming C., Meyer J.A., Schoenfeld D., Nomicos E., Park M., Kong H.H., Segre J.A. Topographic diversity of fungal and bacterial communities in human skin. Nature 2013, 498:367-370. NIH Intramural Sequencing Center Comparative Sequencing Program.
    • (2013) Nature , vol.498 , pp. 367-370
    • Findley, K.1    Oh, J.2    Yang, J.3    Conlan, S.4    Deming, C.5    Meyer, J.A.6    Schoenfeld, D.7    Nomicos, E.8    Park, M.9    Kong, H.H.10    Segre, J.A.11
  • 8
    • 77956096764 scopus 로고    scopus 로고
    • Multivariate cutoff levels analysis (MultoCoLA) of large community data sets
    • Gobet A., Quince C., Ramette A. Multivariate cutoff levels analysis (MultoCoLA) of large community data sets. Nucleic Acid Research 2010, 38(15):e155.
    • (2010) Nucleic Acid Research , vol.38 , Issue.15 , pp. e155
    • Gobet, A.1    Quince, C.2    Ramette, A.3
  • 11
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse S.M., Welch D.M., Morrison H.G., Sogin M.L. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental Microbiology 2010, 12:1889-1898.
    • (2010) Environmental Microbiology , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 13
    • 70349493057 scopus 로고    scopus 로고
    • Massively parallel 454 sequencing indicated hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
    • Jumpponen A., Jones K.L. Massively parallel 454 sequencing indicated hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytologist 2009, 184:438-448.
    • (2009) New Phytologist , vol.184 , pp. 438-448
    • Jumpponen, A.1    Jones, K.L.2
  • 15
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates
    • Kunin V., Engelbrektson A., Ochman H., Hugenholtz P. Wrinkles in the rare biosphere: pyrosequencing errors lead to artificial inflation of diversity estimates. Environmental Microbiology 2010, 12:118-123.
    • (2010) Environmental Microbiology , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 17
    • 84890806831 scopus 로고    scopus 로고
    • Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns
    • Meiser A., Bálint M., Schmitt I. Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns. New Phytologist 2014, 201:623-635.
    • (2014) New Phytologist , vol.201 , pp. 623-635
    • Meiser, A.1    Bálint, M.2    Schmitt, I.3
  • 18
    • 77956292565 scopus 로고    scopus 로고
    • An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
    • Nilsson R.H., Veldre V., Hartmann M., Unterseher M., Amend A., Bergsten J., Kristiansson E., Ruberg M., Jumpponen A., Abarenkov K. An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecology 2010, 3:284-287.
    • (2010) Fungal Ecology , vol.3 , pp. 284-287
    • Nilsson, R.H.1    Veldre, V.2    Hartmann, M.3    Unterseher, M.4    Amend, A.5    Bergsten, J.6    Kristiansson, E.7    Ruberg, M.8    Jumpponen, A.9    Abarenkov, K.10
  • 25
    • 78651322088 scopus 로고    scopus 로고
    • Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology
    • Unterseher M., Jumpponen A., Öpik M., Tedersoo L., Moora M., Dormann C.F., Schnittler M. Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology. Molecular Ecology 2011, 20:275-285.
    • (2011) Molecular Ecology , vol.20 , pp. 275-285
    • Unterseher, M.1    Jumpponen, A.2    Öpik, M.3    Tedersoo, L.4    Moora, M.5    Dormann, C.F.6    Schnittler, M.7
  • 26
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into new bacterial taxonomy
    • Wang Q., Garrity G.M., Tiedje J.M., Cole J.R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into new bacterial taxonomy. Applied and Environmental Microbiology 2007, 73. 5261-5267.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.