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Volumn 22, Issue 25, 2014, Pages 31263-31276

High density 3D localization microscopy using sparse support recovery

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; MOLECULES; RECOVERY;

EID: 84919624865     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.22.031263     Document Type: Article
Times cited : (19)

References (37)
  • 2
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • M. J. Rust, M. Bates, and X. Zhuang, "Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)," Nat. Methods 3(10), 793-796 (2006).
    • (2006) Nat. Methods , vol.3 , Issue.10 , pp. 793-796
    • Rust, M.J.1    Bates, M.2    Zhuang, X.3
  • 3
    • 77952059303 scopus 로고    scopus 로고
    • Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells
    • F. V. Subach, G. H. Patterson, M. Renz, J. Lippincott-Schwartz, and V. V. Verkhusha, "Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells," J. Am. Chem. Soc. 132(18), 6481-6491 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , Issue.18 , pp. 6481-6491
    • Subach, F.V.1    Patterson, G.H.2    Renz, M.3    Lippincott-Schwartz, J.4    Verkhusha, V.V.5
  • 4
    • 84863746787 scopus 로고    scopus 로고
    • PALMER: A method capable of parallel localization of multiple emitters for high-density localization microscopy
    • Y. Wang, T. Quan, S. Zeng, and Z.-L. Huang, "PALMER: a method capable of parallel localization of multiple emitters for high-density localization microscopy," Opt. Express 20(14), 16039-16049 (2012).
    • (2012) Opt. Express , vol.20 , Issue.14 , pp. 16039-16049
    • Wang, Y.1    Quan, T.2    Zeng, S.3    Huang, Z.-L.4
  • 5
    • 79953283371 scopus 로고    scopus 로고
    • DAOSTORM: An algorithm for high-density super-resolution microscopy
    • S. J. Holden, S. Uphoff, and A. N. Kapanidis, "DAOSTORM: an algorithm for high-density super-resolution microscopy," Nat. Methods 8(4), 279-280 (2011).
    • (2011) Nat. Methods , vol.8 , Issue.4 , pp. 279-280
    • Holden, S.J.1    Uphoff, S.2    Kapanidis, A.N.3
  • 6
    • 84863210726 scopus 로고    scopus 로고
    • Faster STORM using compressed sensing
    • L. Zhu, W. Zhang, D. Elnatan, and B. Huang, "Faster STORM using compressed sensing," Nat. Methods 9(7), 721-723 (2012).
    • (2012) Nat. Methods , vol.9 , Issue.7 , pp. 721-723
    • Zhu, L.1    Zhang, W.2    Elnatan, D.3    Huang, B.4
  • 8
    • 84855495496 scopus 로고    scopus 로고
    • Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules
    • D. T. Burnette, P. Sengupta, Y. Dai, J. Lippincott-Schwartz, and B. Kachar, "Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules," Proc. Natl. Acad. Sci. U.S.A. 108(52), 21081-21086 (2011).
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , Issue.52 , pp. 21081-21086
    • Burnette, D.T.1    Sengupta, P.2    Dai, Y.3    Lippincott-Schwartz, J.4    Kachar, B.5
  • 9
    • 80755189345 scopus 로고    scopus 로고
    • Single-molecule-based super-resolution images in the presence of multiple fluorophores
    • P. D. Simonson, E. Rothenberg, and P. R. Selvin, "Single-molecule-based super-resolution images in the presence of multiple fluorophores," Nano Lett. 11(11), 5090-5096 (2011).
    • (2011) Nano Lett. , vol.11 , Issue.11 , pp. 5090-5096
    • Simonson, P.D.1    Rothenberg, E.2    Selvin, P.R.3
  • 10
    • 80052253107 scopus 로고    scopus 로고
    • Simultaneous multiple-emitter fitting for single molecule super-resolution imaging
    • F. Huang, S. L. Schwartz, J. M. Byars, and K. A. Lidke, "Simultaneous multiple-emitter fitting for single molecule super-resolution imaging," Biomed. Opt. Express 2(5), 1377-1393 (2011).
    • (2011) Biomed. Opt. Express , vol.2 , Issue.5 , pp. 1377-1393
    • Huang, F.1    Schwartz, S.L.2    Byars, J.M.3    Lidke, K.A.4
  • 11
    • 80052244324 scopus 로고    scopus 로고
    • High-density localization of active molecules using structured sparse model and bayesian information criterion
    • T. Quan, H. Zhu, X. Liu, Y. Liu, J. Ding, S. Zeng, and Z. L. Huang, "High-density localization of active molecules using structured sparse model and bayesian information criterion," Opt. Express 19(18), 16963-16974 (2011).
    • (2011) Opt. Express , vol.19 , Issue.18 , pp. 16963-16974
    • Quan, T.1    Zhu, H.2    Liu, X.3    Liu, Y.4    Ding, J.5    Zeng, S.6    Huang, Z.L.7
  • 13
    • 84861180866 scopus 로고    scopus 로고
    • Statistical deconvolution for superresolution fluorescence microscopy
    • E. A. Mukamel, H. Babcock, and X. Zhuang, "Statistical deconvolution for superresolution fluorescence microscopy," Biophys. J. 102(10), 2391-2400 (2012).
    • (2012) Biophys. J. , vol.102 , Issue.10 , pp. 2391-2400
    • Mukamel, E.A.1    Babcock, H.2    Zhuang, X.3
  • 14
    • 84888272028 scopus 로고    scopus 로고
    • Fast compressed sensing analysis for super-resolution imaging using L1-homotopy
    • H. P. Babcock, J. R. Moffitt, Y. Cao, and X. Zhuang, "Fast compressed sensing analysis for super-resolution imaging using L1-homotopy," Opt. Express 21(23), 28583-28596 (2013).
    • (2013) Opt. Express , vol.21 , Issue.23 , pp. 28583-28596
    • Babcock, H.P.1    Moffitt, J.R.2    Cao, Y.3    Zhuang, X.4
  • 15
    • 84865556074 scopus 로고    scopus 로고
    • A high-density 3D localization algorithm for stochastic optical reconstruction microscopy
    • H. Babcock, Y. M. Sigal, and X. Zhuang, "A high-density 3D localization algorithm for stochastic optical reconstruction microscopy," Opt. Nanoscopy 1(1), 6 (2012).
    • (2012) Opt. Nanoscopy , vol.1 , Issue.1 , pp. 6
    • Babcock, H.1    Sigal, Y.M.2    Zhuang, X.3
  • 16
    • 84902001335 scopus 로고    scopus 로고
    • High-density 3D single molecular analysis based on compressed sensing
    • L. Gu, Y. Sheng, Y. Chen, H. Chang, Y. Zhang, P. Lv, W. Ji, and T. Xu, "High-density 3D single molecular analysis based on compressed sensing," Biophys. J. 106(11), 2443-2449 (2014).
    • (2014) Biophys. J. , vol.106 , Issue.11 , pp. 2443-2449
    • Gu, L.1    Sheng, Y.2    Chen, Y.3    Chang, H.4    Zhang, Y.5    Lv, P.6    Ji, W.7    Xu, T.8
  • 17
    • 84907708334 scopus 로고    scopus 로고
    • Localisation microscopy with quantum dots using non-negative matrix factorisation
    • O. Mandula, I. Š. Šestak, R. Heintzmann, and C. K. I. Williams, "Localisation microscopy with quantum dots using non-negative matrix factorisation," Opt. Express 22(20), 24594-24605 (2014).
    • (2014) Opt. Express , vol.22 , Issue.20 , pp. 24594-24605
    • Mandula, O.1    Šestak, I.S.2    Heintzmann, R.3    Williams, C.K.I.4
  • 18
    • 33645712892 scopus 로고    scopus 로고
    • Compressed sensing
    • D. L. Donoho, "Compressed sensing," IEEE Trans. Inf. Theory 52(4), 1289-1306 (2006).
    • (2006) IEEE Trans. Inf. Theory , vol.52 , Issue.4 , pp. 1289-1306
    • Donoho, D.L.1
  • 19
    • 0042045277 scopus 로고    scopus 로고
    • 4th ed. (Addison Wesley)
    • E. Hecht, Optics, 4th ed. (Addison Wesley, 2002), p. 698.
    • (2002) Optics , pp. 698
    • Hecht, E.1
  • 20
    • 38949216802 scopus 로고    scopus 로고
    • Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy
    • B. Huang, W. Wang, M. Bates, and X. Zhuang, "Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy," Science 319(5864), 810-813 (2008).
    • (2008) Science , vol.319 , Issue.5864 , pp. 810-813
    • Huang, B.1    Wang, W.2    Bates, M.3    Zhuang, X.4
  • 22
    • 84856479181 scopus 로고    scopus 로고
    • Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton
    • K. Xu, H. P. Babcock, and X. Zhuang, "Dual-objective STORM reveals three-dimensional filament organization in the actin cytoskeleton," Nat. Methods 9(2), 185-188 (2012).
    • (2012) Nat. Methods , vol.9 , Issue.2 , pp. 185-188
    • Xu, K.1    Babcock, H.P.2    Zhuang, X.3
  • 23
    • 62649175269 scopus 로고    scopus 로고
    • Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function
    • M. A. Thompson, J. S. Biteen, S. J. Lord, N. Liu, R. J. Twieg, R. Piestun, W. E. Moerner, S. Rama, and P. Pavani, "Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function," Proc. Natl. Acad. Sci. U.S.A. 106(9), 2995-2999 (2009).
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , Issue.9 , pp. 2995-2999
    • Thompson, M.A.1    Biteen, J.S.2    Lord, S.J.3    Liu, N.4    Twieg, R.J.5    Piestun, R.6    Moerner, W.E.7    Rama, S.8    Pavani, P.9
  • 24
    • 59649106568 scopus 로고    scopus 로고
    • A proximal iteration for deconvolving Poisson noisy images using sparse representations
    • F.-X. Dupé, J. M. Fadili, and J.-L. Starck, "A proximal iteration for deconvolving Poisson noisy images using sparse representations," IEEE Trans. Image Process. 18(2), 310-321 (2009).
    • (2009) IEEE Trans. Image Process. , vol.18 , Issue.2 , pp. 310-321
    • Dupé, F.-X.1    Fadili, J.M.2    Starck, J.-L.3
  • 26
    • 72349092271 scopus 로고    scopus 로고
    • Deconvolution of Poissonian images using variable splitting and augmented Lagrangian optimization
    • (IEEE)
    • M. A. T. Figueiredo and J. M. Bioucas-Dias, "Deconvolution of Poissonian images using variable splitting and augmented Lagrangian optimization," in IEEE/SP 15th Workshop on Statistical Signal Processing (IEEE, 2009), pp. 733-736.
    • (2009) IEEE/SP 15th Workshop on Statistical Signal Processing , pp. 733-736
    • Figueiredo, M.A.T.1    Bioucas-Dias, J.M.2
  • 27
    • 78649287919 scopus 로고    scopus 로고
    • Restoration of Poissonian images using alternating direction optimization
    • M. A. T. Figueiredo and J. M. Bioucas-Dias, "Restoration of Poissonian images using alternating direction optimization," IEEE Trans. Image Process. 19(12), 3133-3145 (2010).
    • (2010) IEEE Trans. Image Process. , vol.19 , Issue.12 , pp. 3133-3145
    • Figueiredo, M.A.T.1    Bioucas-Dias, J.M.2
  • 28
    • 77950043710 scopus 로고    scopus 로고
    • Deblurring Poissonian images by split Bregman techniques
    • S. Setzer, G. Steidl, and T. Teuber, "Deblurring Poissonian images by split Bregman techniques," J. Vis. Commun. Image Represent. 21(3), 193-199 (2010).
    • (2010) J. Vis. Commun. Image Represent. , vol.21 , Issue.3 , pp. 193-199
    • Setzer, S.1    Steidl, G.2    Teuber, T.3
  • 29
    • 75749156622 scopus 로고    scopus 로고
    • An iterative algorithm for background removal in spectroscopy by wavelet transforms
    • C. M. Galloway, E. C. Le Ru, and P. G. Etchegoin, "An iterative algorithm for background removal in spectroscopy by wavelet transforms," Appl. Spectrosc. 63(12), 1370-1376 (2009).
    • (2009) Appl. Spectrosc. , vol.63 , Issue.12 , pp. 1370-1376
    • Galloway, C.M.1    Le Ru, E.C.2    Etchegoin, P.G.3
  • 30
    • 29144439194 scopus 로고    scopus 로고
    • Decoding by linear programming
    • E. J. Candes and T. Tao, "Decoding by Linear Programming," IEEE Trans. Inf. Theory 51(12), 4203-4215 (2005).
    • (2005) IEEE Trans. Inf. Theory , vol.51 , Issue.12 , pp. 4203-4215
    • Candes, E.J.1    Tao, T.2
  • 31
    • 42649140570 scopus 로고    scopus 로고
    • The restricted isometry property and its implications for compressed sensing
    • E. J. Candès, "The restricted isometry property and its implications for compressed sensing," C. R. Math. 346(9-10), 589-592 (2008).
    • (2008) C. R. Math. , vol.346 , Issue.9-10 , pp. 589-592
    • Candès, E.J.1
  • 33
    • 77952181392 scopus 로고    scopus 로고
    • Efficient maximum likelihood estimator fitting of histograms
    • T. A. Laurence and B. A. Chromy, "Efficient maximum likelihood estimator fitting of histograms," Nat. Methods 7(5), 338-339 (2010).
    • (2010) Nat. Methods , vol.7 , Issue.5 , pp. 338-339
    • Laurence, T.A.1    Chromy, B.A.2
  • 34
    • 84906239598 scopus 로고    scopus 로고
    • ThunderSTORM: A comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging
    • M. Ovesný, P. Krížek, J. Borkovec, Z. Švindrych, and G. M. Hagen, "ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging," Bioinformatics 30(16), 2389-2390 (2014).
    • (2014) Bioinformatics , vol.30 , Issue.16 , pp. 2389-2390
    • Ovesný, M.1    Krížek, P.2    Borkovec, J.3    Švindrych, Z.4    Hagen, G.M.5
  • 35
    • 79951614120 scopus 로고    scopus 로고
    • Minimizing detection errors in single molecule localization microscopy
    • P. Krížek, I. Raška, and G. M. Hagen, "Minimizing detection errors in single molecule localization microscopy," Opt. Express 19(4), 3226-3235 (2011).
    • (2011) Opt. Express , vol.19 , Issue.4 , pp. 3226-3235
    • Krížek, P.1    Raška, I.2    Hagen, G.M.3
  • 36
    • 77958486893 scopus 로고    scopus 로고
    • Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane
    • M. Badieirostami, M. D. Lew, M. A. Thompson, and W. E. Moerner, "Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane," Appl. Phys. Lett. 97(16), 161103 (2010).
    • (2010) Appl. Phys. Lett. , vol.97 , Issue.16 , pp. 161103
    • Badieirostami, M.1    Lew, M.D.2    Thompson, M.A.3    Moerner, W.E.4
  • 37


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.