Characterization of a multidrug-resistant, novel bacteroides genomospecies

Emerging Infectious Diseases

Volumn 21, Issue 1, 2015, Pages 95-98

  Salipante, Stephen J ^a   Kalapila, Aley ^a,b   Pottinger, Paul S ^a   Hoogestraat, Daniel R ^a   Cummings, Lisa ^a   Duchin, Jeffrey S ^a   Sengupta, Dhruba J ^a   Pergam, Steven A ^a,b   Cookson, Brad T ^a   Butler Wu, Susan M ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CEFOTETAN; CLINDAMYCIN; DALFOPRISTIN PLUS QUINUPRISTIN; IMIPENEM; LINEZOLID; METRONIDAZOLE; MINOCYCLINE; MOXIFLOXACIN; PIPERACILLIN PLUS TAZOBACTAM; SULTAMICILLIN; TETRACYCLINE; TICARCILLIN; TIGECYCLINE; ANTIINFECTIVE AGENT;

ABDOMINAL ABSCESS; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENETICS; BACTEROIDES; BACTEROIDES FRAGILIS; BACTEROIDES INFECTION; BIOINFORMATICS; CARBAPENEM RESISTANT BACTEROIDES INFECTION; DNA STRAND BREAKAGE; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; METRONIDAZOLE RESISTANT BACTEROIDES INFECTION; MULTIDRUG RESISTANT BACTEROIDES GENOMOSPECIES; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; POLYMERASE CHAIN REACTION; ADENOCARCINOMA; AGED; BACTERIAL GENOME; BLOOD; COLON TUMOR; DNA SEQUENCE; DRUG EFFECTS; GENETICS; ISOLATION AND PURIFICATION; MALE; MICROBIAL SENSITIVITY TEST; MICROBIOLOGY; MULTIDRUG RESISTANCE; PATHOLOGY; SECONDARY;

ADENOCARCINOMA; AGED; ANTI-BACTERIAL AGENTS; BACTEROIDES; BACTEROIDES INFECTIONS; COLONIC NEOPLASMS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; GENOME, BACTERIAL; HUMANS; MALE; MICROBIAL SENSITIVITY TESTS; SEQUENCE ANALYSIS, DNA;

EID: 84919622362     PISSN: 10806040     EISSN: 10806059     Source Type: Journal    
DOI: 10.3201/eid2101.140662     Document Type: Article

References (14)

1. Centers for Disease Control and Prevention. Multidrug-resistant Bacteroides fragilis-Seattle, Washington, 2013. MMWR Morb Mortal Wkly Rep. 2013;62:694-6.
2. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. ABySS: a parallel assembler for short read sequence data. Genome Res. 2009;19:1117-23. http://dx.doi.org/10.1101/gr.089532.108
3. Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2014;42:D206-14. http://dx.doi.org/10.1093/nar/gkt1226
4. Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A. 2009;106:19126-31. http://dx.doi.org/10.1073/pnas.0906412106
5. Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics. 2011;12:402. http://dx.doi.org/10.1186/ 1471-2164-12-402
6. Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, et al. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012;67:2640-4. http://dx.doi. org/10.1093/jac/dks261
7. Ang L, Brenwald NP, Walker RM, Andrews J, Fraise A. Carbapenem resistance in Bacteroides fragilis. J Antimicrob Chemother. 2007;59:1042-4. http://dx.doi.org/10.1093/jac/dkm062
8. Fang H, Edlund C, Hedberg M, Nord CE. New findings in betalactam and metronidazole resistant Bacteroides fragilis group. Int J Antimicrob Agents. 2002;19:361-70. http://dx.doi. org/10.1016/S0924-8579(02)00019-5
9. Alauzet C, Mory F, Teyssier C, Hallage H, Carlier JP, Grollier G, et al. Metronidazole resistance in Prevotella spp. and description of a new nim gene in Prevotella baroniae. Antimicrob Agents Chemother. 2010;54:60-4. http://dx.doi.org/10.1128/AAC.01003-09
10. Husain F, Veeranagouda Y, Hsi J, Meggersee R, Abratt V, Wexler HM. Two multidrug-resistant clinical isolates of Bacteroides fragilis carry a novel metronidazole resistance nim gene (nimJ). Antimicrob Agents Chemother. 2013;57:3767-74. http://dx.doi. org/10.1128/AAC.00386-13
11. Peterson ML, Rotschafer JC, Piddock LJ. Plasmid-mediated complementation of gyrA and gyrB in fluoroquinolone-resistant Bacteroides fragilis. J Antimicrob Chemother. 2003;52:481-4. http://dx.doi.org/10.1093/jac/dkg368
12. Snydman DR, Jacobus NV, McDermott LA, Golan Y, Goldstein EJ, Harrell L, et al. Update on resistance of Bacteroides fragilis group and related species with special attention to carbapenems 2006-2009. Anaerobe. 2011;17:147-51. http://dx.doi.org/10.1016/ j.anaerobe.2011.05.014
13. Nagy E, Urban E, Nord CE. Bacteria ESGoARiA. Antimicrobial susceptibility of Bacteroides fragilis group isolates in Europe: 20 years of experience. Clin Microbiol Infect. 2011;17:371-9. http://dx.doi.org/10.1111/j.1469-0691.2010.03256.x
14. Sherwood JE, Fraser S, Citron DM, Wexler H, Blakely G, Jobling K, et al. Multi-drug resistant Bacteroides fragilis recovered from blood and severe leg wounds caused by an improvised explosive device (IED) in Afghanistan. Anaerobe. 2011;17:152-5. http://dx.doi.org/10.1016/j.anaerobe.2011.02.007