-
1
-
-
0036010036
-
Extraintestinal pathogenic Escherichia coli: "the other bad E coli"
-
Johnson JR, Russo TA. 2002. Extraintestinal pathogenic Escherichia coli: "the other bad E coli". J Lab Clin Med 139:155-162. http://dx.doi.org/10.1067/mlc.2002.121550.
-
(2002)
J Lab Clin Med
, vol.139
, pp. 155-162
-
-
Johnson, J.R.1
Russo, T.A.2
-
2
-
-
0034041230
-
Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC
-
Russo TA, Johnson JR. 2000. Proposal for a new inclusive designation for extraintestinal pathogenic isolates of Escherichia coli: ExPEC. J Infect Dis 181:1753-1754. http://dx.doi.org/10.1086/315418.
-
(2000)
J Infect Dis
, vol.181
, pp. 1753-1754
-
-
Russo, T.A.1
Johnson, J.R.2
-
3
-
-
0038270674
-
Epidemiology of urinary tract infections: Transmission and risk factors, incidence, and costs
-
Foxman B, Brown P. 2003. Epidemiology of urinary tract infections: transmission and risk factors, incidence, and costs. Infect Dis Clin North Am 17:227-241. http://dx.doi.org/10.1016/S0891-5520(03)00005-9.
-
(2003)
Infect Dis Clin North Am
, vol.17
, pp. 227-241
-
-
Foxman, B.1
Brown, P.2
-
4
-
-
0037451929
-
The epidemiology of sepsis in the United States from 1979 through 2000
-
Martin GS, Mannino DM, Eaton S, Moss M. 2003. The epidemiology of sepsis in the United States from 1979 through 2000. N Engl J Med 348:1546-1554. http://dx.doi.org/10.1056/NEJMoa022139.
-
(2003)
N Engl J Med
, vol.348
, pp. 1546-1554
-
-
Martin, G.S.1
Mannino, D.M.2
Eaton, S.3
Moss, M.4
-
5
-
-
84872041624
-
Clonal composition and community clustering of drug-susceptible and -resistant Escherichia coli isolates from bloodstream infections
-
Adams-Sapper S, Diep BA, Perdreau-Remington F, Riley LW. 2013. Clonal composition and community clustering of drug-susceptible and -resistant Escherichia coli isolates from bloodstream infections. Antimicrob Agents Chemother 57:490-497. http://dx.doi.org/10.1128/AAC .01025-12.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 490-497
-
-
Adams-Sapper, S.1
Diep, B.A.2
Perdreau-Remington, F.3
Riley, L.W.4
-
6
-
-
84887444056
-
The clonal distribution and diversity of extraintestinal Escherichia coli isolates vary according to patient characteristics
-
Banerjee R, Johnston B, Lohse C, Chattopadhyay S, Tchesnokova V, Sokurenko EV, Johnson JR. 2013. The clonal distribution and diversity of extraintestinal Escherichia coli isolates vary according to patient characteristics. Antimicrob Agents Chemother 57:5912-5917. http://dx.doi.org/10.1128/AAC.01065-13.
-
(2013)
Antimicrob Agents Chemother
, vol.57
, pp. 5912-5917
-
-
Banerjee, R.1
Johnston, B.2
Lohse, C.3
Chattopadhyay, S.4
Tchesnokova, V.5
Sokurenko, E.V.6
Johnson, J.R.7
-
7
-
-
60549112381
-
Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
-
Jaureguy F, Landraud L, Passet V, Diancourt L, Frapy E, Guigon G, Carbonnelle E, Lortholary O, Clermont O, Denamur E, Picard B, Nassif X, Brisse S. 2008. Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains. BMC Genomics 9:560. http://dx.doi.org/10.1186/1471-2164-9-560.
-
(2008)
BMC Genomics
, vol.9
, pp. 560
-
-
Jaureguy, F.1
Landraud, L.2
Passet, V.3
Diancourt, L.4
Frapy, E.5
Guigon, G.6
Carbonnelle, E.7
Lortholary, O.8
Clermont, O.9
Denamur, E.10
Picard, B.11
Nassif, X.12
Brisse, S.13
-
8
-
-
30744461636
-
Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing
-
Tartof SY, Solberg OD, Manges AR, Riley LW. 2005. Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing. J Clin Microbiol 43:5860-5864. http://dx.doi.org/10.1128/JCM.43.12 .5860-5864.2005.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 5860-5864
-
-
Tartof, S.Y.1
Solberg, O.D.2
Manges, A.R.3
Riley, L.W.4
-
9
-
-
80054685465
-
Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings
-
Croxall G, Hale J, Weston V, Manning G, Cheetham P, Achtman M, McNally A. 2011. Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings. J Antimicrob Chemother 66:2501-2508. http://dx.doi.org/10.1093/jac/dkr349.
-
(2011)
J Antimicrob Chemother
, vol.66
, pp. 2501-2508
-
-
Croxall, G.1
Hale, J.2
Weston, V.3
Manning, G.4
Cheetham, P.5
Achtman, M.6
McNally, A.7
-
10
-
-
84855830349
-
Population structure, virulence potential and antibiotic susceptibility of uropathogenic Escherichia coli from Northwest England
-
Gibreel TM, Dodgson AR, Cheesbrough J, Fox AJ, Bolton FJ, Upton M. 2012. Population structure, virulence potential and antibiotic susceptibility of uropathogenic Escherichia coli from Northwest England. J. Antimicrob Chemother 67:346-356. http://dx.doi.org/10.1093/jac/dkr451.
-
(2012)
J. Antimicrob Chemother
, vol.67
, pp. 346-356
-
-
Gibreel, T.M.1
Dodgson, A.R.2
Cheesbrough, J.3
Fox, A.J.4
Bolton, F.J.5
Upton, M.6
-
11
-
-
84890349642
-
Escherichia coli bacteraemia: 2 years of prospective regional surveillance (2010-12)
-
Horner C, Fawley W, Morris K, Parnell P, Denton M, Wilcox M. 2014. Escherichia coli bacteraemia: 2 years of prospective regional surveillance (2010-12). J Antimicrob Chemother 69:91-100. http://dx.doi.org/10.1093/jac/dkt333.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 91-100
-
-
Horner, C.1
Fawley, W.2
Morris, K.3
Parnell, P.4
Denton, M.5
Wilcox, M.6
-
12
-
-
84864953125
-
Food-borne origins of Escherichia coli causing extraintestinal infections
-
Manges AR, Johnson JR. 2012. Food-borne origins of Escherichia coli causing extraintestinal infections. Clin Infect Dis 55:712-719. http://dx.doi.org/10.1093/cid/cis502.
-
(2012)
Clin Infect Dis
, vol.55
, pp. 712-719
-
-
Manges, A.R.1
Johnson, J.R.2
-
13
-
-
78650339210
-
Escherichia coli O25b-ST131: A pandemic, multiresistant, community-associated strain
-
Rogers BA, Sidjabat HE, Paterson DL. 2011. Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain. J Antimicrob Chemother 66:1-14. http://dx.doi.org/10.1093/jac/dkq415.
-
(2011)
J Antimicrob Chemother
, vol.66
, pp. 1-14
-
-
Rogers, B.A.1
Sidjabat, H.E.2
Paterson, D.L.3
-
14
-
-
56649108214
-
UK epidemic Escherichia coli strains A-E, with CTX-M-15 betalactamase, all belong to the international O25:H4-ST131 clone
-
Lau SH, Kaufmann ME, Livermore DM, Woodford N, Willshaw GA, Cheasty T, Stamper K, Reddy S, Cheesbrough J, Bolton FJ, Fox AJ, Upton M. 2008. UK epidemic Escherichia coli strains A-E, with CTX-M-15 betalactamase, all belong to the international O25:H4-ST131 clone. J Antimicrob Chemother 62:1241-1244. http://dx.doi.org/10.1093/jac/dkn380.
-
(2008)
J Antimicrob Chemother
, vol.62
, pp. 1241-1244
-
-
Lau, S.H.1
Kaufmann, M.E.2
Livermore, D.M.3
Woodford, N.4
Willshaw, G.A.5
Cheasty, T.6
Stamper, K.7
Reddy, S.8
Cheesbrough, J.9
Bolton, F.J.10
Fox, A.J.11
Upton, M.12
-
15
-
-
76749123412
-
Molecular epidemiology of Escherichia coli producing CTX-M beta-lactamases: The worldwide emergence of clone ST131 O25:H4
-
Peirano G, Pitout JD. 2010. Molecular epidemiology of Escherichia coli producing CTX-M beta-lactamases: the worldwide emergence of clone ST131 O25:H4. Int. J Antimicrob Agents 35:316-321. http://dx.doi.org/10.1016/j.ijantimicag.2009.11.003.
-
(2010)
Int. J Antimicrob Agents
, vol.35
, pp. 316-321
-
-
Peirano, G.1
Pitout, J.D.2
-
16
-
-
79960959584
-
Multiresistant Gram-negative bacteria: The role of high-risk clones in the dissemination of antibiotic resistance
-
Woodford N, Turton JF, Livermore DM. 2011. Multiresistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. FEMS Microbiol Rev 35:736-755. http://dx.doi.org/10.1111/j.1574-6976.2011.00268.x.
-
(2011)
FEMS Microbiol Rev
, vol.35
, pp. 736-755
-
-
Woodford, N.1
Turton, J.F.2
Livermore, D.M.3
-
17
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
18
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. 2012. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 67:2640-2644. http://dx.doi.org/10.1093/jac/dks261.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
19
-
-
84884650083
-
Comparative analysis of ESBL-positive Escherichia coli isolates from animals and humans from the UK, The Netherlands and Germany
-
Wu G, Day MJ, Mafura MT, Nunez-Garcia J, Fenner JJ, Sharma M, van Essen-Zandbergen A, Rodríguez I, Dierikx C, Kadlec K, Schink AK, Wain J, Helmuth R, Guerra B, Schwarz S, Threlfall J, Woodward MJ, Woodford N, Coldham N, Mevius D. 2013. Comparative analysis of ESBL-positive Escherichia coli isolates from animals and humans from the UK, The Netherlands and Germany. PLoS One 8:e75392. http://dx.doi.org/10.1371/journal.pone.0075392.
-
(2013)
PLoS One
, vol.8
-
-
Wu, G.1
Day, M.J.2
Mafura, M.T.3
Nunez-Garcia, J.4
Fenner, J.J.5
Sharma, M.6
Van Essen-Zandbergen, A.7
Rodríguez, I.8
Dierikx, C.9
Kadlec, K.10
Schink, A.K.11
Wain, J.12
Helmuth, R.13
Guerra, B.14
Schwarz, S.15
Threlfall, J.16
Woodward, M.J.17
Woodford, N.18
Coldham, N.19
Mevius, D.20
more..
-
20
-
-
84886280390
-
Declining cephalosporin and fluoroquinolone nonsusceptibility among bloodstream Enterobacteriaceae from the UK: Links to prescribing change?
-
Livermore DM, Hope R, Reynolds R, Blackburn R, Johnson AP, Woodford N. 2013. Declining cephalosporin and fluoroquinolone nonsusceptibility among bloodstream Enterobacteriaceae from the UK: links to prescribing change? J Antimicrob Chemother 68:2667-2674. http://dx.doi.org/10.1093/jac/dkt212.
-
(2013)
J Antimicrob Chemother
, vol.68
, pp. 2667-2674
-
-
Livermore, D.M.1
Hope, R.2
Reynolds, R.3
Blackburn, R.4
Johnson, A.P.5
Woodford, N.6
-
21
-
-
54349118690
-
Non-susceptibility trends among Enterobacteriaceae from bacteraemias in the UK and Ireland, 2001-06
-
Livermore DM, Hope R, Brick G, Lillie M, Reynolds R, BSAC Working Parties on Resistance Surveillance. 2008. Non-susceptibility trends among Enterobacteriaceae from bacteraemias in the UK and Ireland, 2001-06. J Antimicrob Chemother 62(Suppl 2):ii41-ii54. http://dx.doi.org/10.1093/jac/dkn351.
-
(2008)
J Antimicrob Chemother
, vol.62
, pp. ii41-ii54
-
-
Livermore, D.M.1
Hope, R.2
Brick, G.3
Lillie, M.4
Reynolds, R.5
-
22
-
-
54249151829
-
Endemic and epidemic lineages of Escherichia coli that cause urinary tract infections
-
Manges AR, Tabor H, Tellis P, Vincent C, Tellier PP. 2008. Endemic and epidemic lineages of Escherichia coli that cause urinary tract infections. Emerg Infect Dis 14:1575-1583. http://dx.doi.org/10.3201/eid1410 .080102.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 1575-1583
-
-
Manges, A.R.1
Tabor, H.2
Tellis, P.3
Vincent, C.4
Tellier, P.P.5
-
23
-
-
84874263817
-
Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli
-
Johnson JR, Tchesnokova V, Johnston B, Clabots C, Roberts PL, Billig M, Riddell K, Rogers P, Qin X, Butler-Wu S, Price LB, Aziz M, Nicolas-Chanoine MH, Debroy C, Robicsek A, Hansen G, Urban C, Platell J, Trott DJ, Zhanel G, Weissman SJ, Cookson BT, Fang FC, Limaye AP, Scholes D, Chattopadhyay S, Hooper DC, Sokurenko EV. 2013. Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli. J Infect Dis 207:919-928. http://dx.doi.org/10.1093/infdis/jis933.
-
(2013)
J Infect Dis
, vol.207
, pp. 919-928
-
-
Johnson, J.R.1
Tchesnokova, V.2
Johnston, B.3
Clabots, C.4
Roberts, P.L.5
Billig, M.6
Riddell, K.7
Rogers, P.8
Qin, X.9
Butler-Wu, S.10
Price, L.B.11
Aziz, M.12
Nicolas-Chanoine, M.H.13
Debroy, C.14
Robicsek, A.15
Hansen, G.16
Urban, C.17
Platell, J.18
Trott, D.J.19
Zhanel, G.20
Weissman, S.J.21
Cookson, B.T.22
Fang, F.C.23
Limaye, A.P.24
Scholes, D.25
Chattopadhyay, S.26
Hooper, D.C.27
Sokurenko, E.V.28
more..
-
24
-
-
0035807584
-
Widespread distribution of urinary tract infections caused by a multidrug-resistant Escherichia coli clonal group
-
Manges AR, Johnson JR, Foxman B, O'Bryan TT, Fullerton KE, Riley LW. 2001. Widespread distribution of urinary tract infections caused by a multidrug-resistant Escherichia coli clonal group. N Engl J Med 345:1007-1013. http://dx.doi.org/10.1056/NEJMoa011265.
-
(2001)
N Engl J Med
, vol.345
, pp. 1007-1013
-
-
Manges, A.R.1
Johnson, J.R.2
Foxman, B.3
O'Bryan, T.T.4
Fullerton, K.E.5
Riley, L.W.6
|