-
1
-
-
84862800379
-
Significance of the microbiome in obstructive lung disease
-
Han MK, Huang YJ, Lipuma JJ, Boushey HA, Boucher RC, Cookson WO, Curtis JL, Erb-Downward J, Lynch SV, Sethi S, Toews GB, Young VB, Wolfgang MC, Huffnagle GB, Martinez FJ. 2012. Significance of the microbiome in obstructive lung disease. Thorax 67:456-463. http://dx.doi.org/10.1136/thoraxjnl-2011-201183.
-
(2012)
Thorax
, vol.67
, pp. 456-463
-
-
Han, M.K.1
Huang, Y.J.2
Lipuma, J.J.3
Boushey, H.A.4
Boucher, R.C.5
Cookson, W.O.6
Curtis, J.L.7
Erb-Downward, J.8
Lynch, S.V.9
Sethi, S.10
Toews, G.B.11
Young, V.B.12
Wolfgang, M.C.13
Huffnagle, G.B.14
Martinez, F.J.15
-
2
-
-
84876999613
-
Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
-
Zemanick ET, Harris JK, Wagner BD, Robertson CE, Sagel SD, Stevens MJ, Accurso FJ, Laguna TA. 2013. Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations. PLoS One 8:e62917. http://dx.doi.org/10.1371/journal.pone.0062917.
-
(2013)
PLoS One
, vol.8
-
-
Zemanick, E.T.1
Harris, J.K.2
Wagner, B.D.3
Robertson, C.E.4
Sagel, S.D.5
Stevens, M.J.6
Accurso, F.J.7
Laguna, T.A.8
-
3
-
-
42949105490
-
Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis
-
Tunney MM, Field TR, Moriarty TF, Patrick S, Doering G, Muhlebach MS, Wolfgang MC, Boucher R, Gilpin DF, McDowell A, Elborn JS. 2008. Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis. Am J Resp Crit Care Med 177:995-1001. http://dx.doi.org/10.1164/rccm.200708-1151OC.
-
(2008)
Am J Resp Crit Care Med
, vol.177
, pp. 995-1001
-
-
Tunney, M.M.1
Field, T.R.2
Moriarty, T.F.3
Patrick, S.4
Doering, G.5
Muhlebach, M.S.6
Wolfgang, M.C.7
Boucher, R.8
Gilpin, D.F.9
McDowell, A.10
Elborn, J.S.11
-
4
-
-
0036167851
-
Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients
-
Worlitzsch D, Tarran R, Ulrich M, Schwab U, Cekici A, Meyer KC, Birrer P, Bellon G, Berger J, Weiss T, Botzenhart K, Yankaskas JR, Randell S, Boucher RC, Doring G. 2002. Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. J Clin Invest 109:317-325. http://dx.doi.org/10.1172/JCI200213870.
-
(2002)
J Clin Invest
, vol.109
, pp. 317-325
-
-
Worlitzsch, D.1
Tarran, R.2
Ulrich, M.3
Schwab, U.4
Cekici, A.5
Meyer, K.C.6
Birrer, P.7
Bellon, G.8
Berger, J.9
Weiss, T.10
Botzenhart, K.11
Yankaskas, J.R.12
Randell, S.13
Boucher, R.C.14
Doring, G.15
-
5
-
-
58349116453
-
Cystic fibrosis and innate immunity: how chloride channel mutations provoke lung disease
-
Döring G, Gulbins E. 2009. Cystic fibrosis and innate immunity: how chloride channel mutations provoke lung disease. Cell Microbiol 11:208-216. http://dx.doi.org/10.1111/j.1462-5822.2008.01271.x.
-
(2009)
Cell Microbiol
, vol.11
, pp. 208-216
-
-
Döring, G.1
Gulbins, E.2
-
6
-
-
0036225688
-
Lung infections associated with cystic fibrosis
-
Lyczak JB, Cannon CL, Pier GB. 2002. Lung infections associated with cystic fibrosis. Clin Microbiol Rev 15:194-222. http://dx.doi.org/10.1128/CMR.15.2.194-222.2002.
-
(2002)
Clin Microbiol Rev
, vol.15
, pp. 194-222
-
-
Lyczak, J.B.1
Cannon, C.L.2
Pier, G.B.3
-
7
-
-
79959306147
-
Anaerobic bacteria in cystic fibrosis: pathogens or harmless commensals?
-
Jones AM. 2011. Anaerobic bacteria in cystic fibrosis: pathogens or harmless commensals? Thorax 66:558-559. http://dx.doi.org/10.1136/thx.2010.157875.
-
(2011)
Thorax
, vol.66
, pp. 558-559
-
-
Jones, A.M.1
-
8
-
-
33746255217
-
Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis
-
Rogers GB, Carroll MP, Serisier DJ, Hockey PM, Jones G, Kehagia V, Connett GJ, Bruce KD. 2006. Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis. J Clin Microbiol 44:2601-2604. http://dx.doi.org/10.1128/JCM.02282-05.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2601-2604
-
-
Rogers, G.B.1
Carroll, M.P.2
Serisier, D.J.3
Hockey, P.M.4
Jones, G.5
Kehagia, V.6
Connett, G.J.7
Bruce, K.D.8
-
9
-
-
77957357555
-
The human oral microbiome
-
Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG. 2010. The human oral microbiome. J Bacteriol 192:5002-5017. http://dx.doi.org/10.1128/JB.00542-10.
-
(2010)
J Bacteriol
, vol.192
, pp. 5002-5017
-
-
Dewhirst, F.E.1
Chen, T.2
Izard, J.3
Paster, B.J.4
Tanner, A.C.5
Yu, W.H.6
Lakshmanan, A.7
Wade, W.G.8
-
10
-
-
79952769971
-
Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
-
Valm AM, Mark Welch JL, Rieken CW, Hasegawa Y, Sogin ML, Oldenbourg R, Dewhirst FE, Borisy GG. 2011. Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging. Proc Natl Acad Sci U S A 108:4152-4157. http://dx.doi.org/10.1073/pnas.1101134108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4152-4157
-
-
Valm, A.M.1
Mark Welch, J.L.2
Rieken, C.W.3
Hasegawa, Y.4
Sogin, M.L.5
Oldenbourg, R.6
Dewhirst, F.E.7
Borisy, G.G.8
-
11
-
-
8644256676
-
Characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16S ribosomal DNA terminal restriction fragment length polymorphism profiling
-
Rogers GB, Carroll MP, Serisier DJ, Hockey PM, Jones G, Bruce KD. 2004. Characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16S ribosomal DNA terminal restriction fragment length polymorphism profiling. J Clin Microbiol 42:5176-5183. http://dx.doi.org/10.1128/JCM.42.11.5176-5183.2004.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5176-5183
-
-
Rogers, G.B.1
Carroll, M.P.2
Serisier, D.J.3
Hockey, P.M.4
Jones, G.5
Bruce, K.D.6
-
12
-
-
73949088945
-
Determining cystic fibrosis-affected lung microbiology: comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling
-
Rogers GB, Skelton S, Serisier DJ, van der Gast CJ, Bruce KD. 2010. Determining cystic fibrosis-affected lung microbiology: comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling. J Clin Microbiol 48: 78-86. http://dx.doi.org/10.1128/JCM.01324-09.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 78-86
-
-
Rogers, G.B.1
Skelton, S.2
Serisier, D.J.3
van der Gast, C.J.4
Bruce, K.D.5
-
13
-
-
41149110597
-
Diversity of Veillonella spp. from sound and carious sites in children
-
Arif N, Sheehy EC, Do T, Beighton D. 2008. Diversity of Veillonella spp. from sound and carious sites in children. J Dent Res 87:278-282. http://dx.doi.org/10.1177/154405910808700308.
-
(2008)
J Dent Res
, vol.87
, pp. 278-282
-
-
Arif, N.1
Sheehy, E.C.2
Do, T.3
Beighton, D.4
-
14
-
-
0023686797
-
Coaggregation properties of human oral Veillonella spp.: relationship to colonization site and oral ecology
-
Hughes CV, Kolenbrander PE, Andersen RN, Moore LV. 1988. Coaggregation properties of human oral Veillonella spp.: relationship to colonization site and oral ecology. Appl Environ Microbiol 54:1957-1963.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1957-1963
-
-
Hughes, C.V.1
Kolenbrander, P.E.2
Andersen, R.N.3
Moore, L.V.4
-
15
-
-
0034457837
-
Veillonella parvula meningitis: case report and review of Veillonella infections
-
Bhatti MA, Frank MO. 2000. Veillonella parvula meningitis: case report and review of Veillonella infections. Clin Infect Dis 31:839-840. http://dx.doi.org/10.1086/314046.
-
(2000)
Clin Infect Dis
, vol.31
, pp. 839-840
-
-
Bhatti, M.A.1
Frank, M.O.2
-
16
-
-
17644369248
-
The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication
-
Aendekerk S, Diggle SP, Song Z, Hoiby N, Cornelis P, Williams P, Camara M. 2005. The MexGHI-OpmD multidrug efflux pump controls growth, antibiotic susceptibility and virulence in Pseudomonas aeruginosa via 4-quinolone-dependent cell-to-cell communication. Microbiology 151:1113-1125. http://dx.doi.org/10.1099/mic.0.27631-0.
-
(2005)
Microbiology
, vol.151
, pp. 1113-1125
-
-
Aendekerk, S.1
Diggle, S.P.2
Song, Z.3
Hoiby, N.4
Cornelis, P.5
Williams, P.6
Camara, M.7
-
17
-
-
33847052414
-
Veillonella parvula discitis and secondary bacteremia: a rare infection complicating endoscopy and colonoscopy?
-
Marriott D, Stark D, Harkness J. 2007. Veillonella parvula discitis and secondary bacteremia: a rare infection complicating endoscopy and colonoscopy? J Clin Microbiol 45:672-674. http://dx.doi.org/10.1128/JCM.01633-06.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 672-674
-
-
Marriott, D.1
Stark, D.2
Harkness, J.3
-
18
-
-
8444234227
-
Was isolation of Veillonella from spinal osteomyelitis possible due to poor tissue perfusion?
-
Bongaerts GP, Schreurs BW, Lunel FV, Lemmens JA, Pruszczynski M, Merkx MA. 2004. Was isolation of Veillonella from spinal osteomyelitis possible due to poor tissue perfusion? Med Hypotheses 63:659-661. http://dx.doi.org/10.1016/j.mehy.2004.02.052.
-
(2004)
Med Hypotheses
, vol.63
, pp. 659-661
-
-
Bongaerts, G.P.1
Schreurs, B.W.2
Lunel, F.V.3
Lemmens, J.A.4
Pruszczynski, M.5
Merkx, M.A.6
-
19
-
-
0026501425
-
Osteomyelitis due to Veillonella parvula: case report and review
-
Singh N, Yu VL. 1992. Osteomyelitis due to Veillonella parvula: case report and review. Clin Infect Dis 14:361-363. http://dx.doi.org/10.1093/clinids/14.1.361.
-
(1992)
Clin Infect Dis
, vol.14
, pp. 361-363
-
-
Singh, N.1
Yu, V.L.2
-
20
-
-
0034752023
-
Prosthetic joint infection due to Veillonella dispar
-
Marchandin H, Jean-Pierre H, Carriere C, Canovas F, Darbas H, Jumas-Bilak E. 2001. Prosthetic joint infection due to Veillonella dispar. Eur J Clin Microbiol Infect Dis 20:340-342. http://dx.doi.org/10.1007/PL00011273.
-
(2001)
Eur J Clin Microbiol Infect Dis
, vol.20
, pp. 340-342
-
-
Marchandin, H.1
Jean-Pierre, H.2
Carriere, C.3
Canovas, F.4
Darbas, H.5
Jumas-Bilak, E.6
-
21
-
-
54349129585
-
Veillonella as a cause of chronic anaerobic pneumonitis
-
Shah A, Panjabi C, Nair V, Chaudhry R, Thukral SS. 2008. Veillonella as a cause of chronic anaerobic pneumonitis. Int J Infect Dis 12:e115-e117. http://dx.doi.org/10.1016/j.ijid.2008.03.018.
-
(2008)
Int J Infect Dis
, vol.12
, pp. e115-e117
-
-
Shah, A.1
Panjabi, C.2
Nair, V.3
Chaudhry, R.4
Thukral, S.S.5
-
22
-
-
0023194149
-
Bilateral abscessed orchiepididymitis associated with sepsis caused by Veillonella parvula and Clostridium perfringens: case report and review of the literature
-
Arrosagaray PM, Salas C, Morales M, Correas M, Barros JM, Cordon ML. 1987. Bilateral abscessed orchiepididymitis associated with sepsis caused by Veillonella parvula and Clostridium perfringens: case report and review of the literature. J Clin Microbiol 25:1579-1580.
-
(1987)
J Clin Microbiol
, vol.25
, pp. 1579-1580
-
-
Arrosagaray, P.M.1
Salas, C.2
Morales, M.3
Correas, M.4
Barros, J.M.5
Cordon, M.L.6
-
23
-
-
11144267360
-
Prosthetic valve endocarditis caused by Veillonella parvula
-
Boo TW, Cryan B, O'Donnell A, Fahy G. 2005. Prosthetic valve endocarditis caused by Veillonella parvula. J Infect 50:81-83. http://dx.doi.org/10.1016/j.jinf.2003.11.008.
-
(2005)
J Infect
, vol.50
, pp. 81-83
-
-
Boo, T.W.1
Cryan, B.2
O'Donnell, A.3
Fahy, G.4
-
24
-
-
0029956371
-
Veillonella parvula bacteremia without an underlying source
-
Fisher RG, Denison MR. 1996. Veillonella parvula bacteremia without an underlying source. J Clin Microbiol 34:3235-3236.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 3235-3236
-
-
Fisher, R.G.1
Denison, M.R.2
-
25
-
-
0031896263
-
Two fatal cases of Veillonella bacteremia
-
Liu JW, Wu JJ, Wang LR, Teng LJ, Huang TC. 1998. Two fatal cases of Veillonella bacteremia. Eur J Clin Microbiol Infect Dis 17:62-64. http://dx.doi.org/10.1007/BF01584370.
-
(1998)
Eur J Clin Microbiol Infect Dis
, vol.17
, pp. 62-64
-
-
Liu, J.W.1
Wu, J.J.2
Wang, L.R.3
Teng, L.J.4
Huang, T.C.5
-
26
-
-
33746216089
-
Sepsis caused by Veillonella parvula infection in a 17-year-old patient with X-linked agammaglobulinemia (Bruton's disease)
-
Strach M, Siedlar M, Kowalczyk D, Zembala M, Grodzicki T. 2006. Sepsis caused by Veillonella parvula infection in a 17-year-old patient with X-linked agammaglobulinemia (Bruton's disease). J Clin Microbiol 44: 2655-2656. http://dx.doi.org/10.1128/JCM.00467-06.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2655-2656
-
-
Strach, M.1
Siedlar, M.2
Kowalczyk, D.3
Zembala, M.4
Grodzicki, T.5
-
27
-
-
0030008235
-
Veillonella infections in children
-
Brook I. 1996. Veillonella infections in children. J Clin Microbiol 34: 1283-1285.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1283-1285
-
-
Brook, I.1
-
28
-
-
0035688697
-
Deep neck infections in children
-
Tan PT, Chang LY, Huang YC, Chiu CH, Wang CR, Lin TY. 2001. Deep neck infections in children. J Microbiol Immunol Infect 34:287-292. http://dx.doi.org/10.1016/S1684-1182(10)60007-2.
-
(2001)
J Microbiol Immunol Infect
, vol.34
, pp. 287-292
-
-
Tan, P.T.1
Chang, L.Y.2
Huang, Y.C.3
Chiu, C.H.4
Wang, C.R.5
Lin, T.Y.6
-
29
-
-
78149357501
-
Relative contribution of Prevotella intermedia and Pseudomonas aeruginosa to lung pathology in airways of patients with cystic fibrosis
-
Ulrich M, Beer I, Braitmaier P, Dierkes M, Kummer F, Krismer B, Schumacher U, Grapler-Mainka U, Riethmuller J, Jensen PO, Bjarnsholt T, Hoiby N, Bellon G, Doring G. 2010. Relative contribution of Prevotella intermedia and Pseudomonas aeruginosa to lung pathology in airways of patients with cystic fibrosis. Thorax 65:978-984. http://dx.doi.org/10.1136/thx.2010.137745.
-
(2010)
Thorax
, vol.65
, pp. 978-984
-
-
Ulrich, M.1
Beer, I.2
Braitmaier, P.3
Dierkes, M.4
Kummer, F.5
Krismer, B.6
Schumacher, U.7
Grapler-Mainka, U.8
Riethmuller, J.9
Jensen, P.O.10
Bjarnsholt, T.11
Hoiby, N.12
Bellon, G.13
Doring, G.14
-
30
-
-
0346887122
-
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication
-
Duan K, Dammel C, Stein J, Rabin H, Surette MG. 2003. Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication. Mol Microbiol 50:1477-1491. http://dx.doi.org/10.1046/j.1365-2958.2003.03803.x.
-
(2003)
Mol Microbiol
, vol.50
, pp. 1477-1491
-
-
Duan, K.1
Dammel, C.2
Stein, J.3
Rabin, H.4
Surette, M.G.5
-
31
-
-
84865565311
-
Biofilm formation by Pseudomonas aeruginosa in solid murine tumors-a novel model system
-
Komor U, Bielecki P, Loessner H, Rohde M, Wolf K, Westphal K, Weiss S, Haussler S. 2012. Biofilm formation by Pseudomonas aeruginosa in solid murine tumors-a novel model system. Microbes Infect 14:951-958. http://dx.doi.org/10.1016/j.micinf.2012.04.002.
-
(2012)
Microbes Infect
, vol.14
, pp. 951-958
-
-
Komor, U.1
Bielecki, P.2
Loessner, H.3
Rohde, M.4
Wolf, K.5
Westphal, K.6
Weiss, S.7
Haussler, S.8
-
32
-
-
84904258659
-
Murine solid tumours as a novel model to study bacterial biofilm formation in vivo
-
Pawar V, Crull K, Komor U, Kasnitz N, Frahm M, Kocijancic D, Westphal K, Leschner S, Wolf K, Loessner H, Rohde M, Haussler S, Weiss S. 2014. Murine solid tumours as a novel model to study bacterial biofilm formation in vivo. J Intern Med 276:130-139. http://dx.doi.org/10.1111/joim.12258.
-
(2014)
J Intern Med
, vol.276
, pp. 130-139
-
-
Pawar, V.1
Crull, K.2
Komor, U.3
Kasnitz, N.4
Frahm, M.5
Kocijancic, D.6
Westphal, K.7
Leschner, S.8
Wolf, K.9
Loessner, H.10
Rohde, M.11
Haussler, S.12
Weiss, S.13
-
33
-
-
84873123393
-
Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites
-
Bielecki P, Komor U, Bielecka A, Musken M, Puchalka J, Pletz MW, Ballmann M, Martins dos Santos VA, Weiss S, Haussler S. 2013. Ex vivo transcriptional profiling reveals a common set of genes important for the adaptation of Pseudomonas aeruginosa to chronically infected host sites. Environ Microbiol 15:570-587. http://dx.doi.org/10.1111/1462-2920.12024.
-
(2013)
Environ Microbiol
, vol.15
, pp. 570-587
-
-
Bielecki, P.1
Komor, U.2
Bielecka, A.3
Musken, M.4
Puchalka, J.5
Pletz, M.W.6
Ballmann, M.7
Martins dos Santos, V.A.8
Weiss, S.9
Haussler, S.10
-
34
-
-
33644504829
-
An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants
-
Liberati NT, Urbach JM, Miyata S, Lee DG, Drenkard E, Wu G, Villanueva J, Wei T, Ausubel FM. 2006. An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants. Proc Natl Acad Sci U S A 103:2833-2838. http://dx.doi.org/10.1073/pnas.0511100103.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2833-2838
-
-
Liberati, N.T.1
Urbach, J.M.2
Miyata, S.3
Lee, D.G.4
Drenkard, E.5
Wu, G.6
Villanueva, J.7
Wei, T.8
Ausubel, F.M.9
-
35
-
-
84856557095
-
The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing
-
Dötsch A, Eckweiler D, Schniederjans M, Zimmermann A, Jensen V, Scharfe M, Geffers R, Haussler S. 2012. The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing. PLoS One 7:e31092. http://dx.doi.org/10.1371/journal.pone.0031092.
-
(2012)
PLoS One
, vol.7
-
-
Dötsch, A.1
Eckweiler, D.2
Schniederjans, M.3
Zimmermann, A.4
Jensen, V.5
Scharfe, M.6
Geffers, R.7
Haussler, S.8
-
36
-
-
84919465802
-
-
18 May, Bundesanzeiger Verlag, Bonn, Germany. (In German.)
-
Bundesanzeiger Verlag. 18 May 2006. German animal welfare act (Tierschutzgesetz) TierSchG BGBI S. 1206. Bundesanzeiger Verlag, Bonn, Germany. (In German.) www.bgbl.de/banzxaver/bgbl/start.xav?startbk=Bundesanzeiger_BGBl&jumpTo=bgbl106s1206.pdf.
-
(2006)
German animal welfare act (Tierschutzgesetz) TierSchG BGBI S. 1206
-
-
-
37
-
-
84919469459
-
-
18 December, European Commission directive 86/609/EEC, OJ L 358
-
European Commission. 18 December 1986. European Commission directive 86/609/EEC, OJ L 358, p 1-28. http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX:31986L0609.
-
(1986)
, pp. 1-28
-
-
-
38
-
-
0003633755
-
-
National Academies Press, Washington, DC
-
National Research Council. 1996. Guide for the care and use of laboratory animals. National Academies Press, Washington, DC. http://www.nap.edu/openbook.php?record_id=5140&page=R1.
-
(1996)
Guide for the care and use of laboratory animals
-
-
-
39
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M. 2011. Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21:936-939. http://dx.doi.org/10.1101/gr.111120.110.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
40
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biol 11:R106. http://dx.doi.org/10.1186/gb-2010-11-10-r106.
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
41
-
-
77955212404
-
A 96-well-platebased optical method for the quantitative and qualitative evaluation of Pseudomonas aeruginosa biofilm formation and its application to susceptibility testing
-
Müsken M, Di Fiore S, Romling U, Haussler S. 2010. A 96-well-platebased optical method for the quantitative and qualitative evaluation of Pseudomonas aeruginosa biofilm formation and its application to susceptibility testing. Nat Protoc 5:1460-1469. http://dx.doi.org/10.1038/nprot.2010.110.
-
(2010)
Nat Protoc
, vol.5
, pp. 1460-1469
-
-
Müsken, M.1
Di Fiore, S.2
Romling, U.3
Haussler, S.4
-
42
-
-
32044442967
-
Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP
-
Mueller LN, de Brouwer JF, Almeida JS, Stal LJ, Xavier JB. 2006. Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP. BMC Ecol 6:1. http://dx.doi.org/10.1186/1472-6785-6-1.
-
(2006)
BMC Ecol
, vol.6
, pp. 1
-
-
Mueller, L.N.1
de Brouwer, J.F.2
Almeida, J.S.3
Stal, L.J.4
Xavier, J.B.5
-
43
-
-
77953953073
-
Fluorescence in situ hybridization to improve the diagnosis of endocarditis: a pilot study
-
Mallmann C, Siemoneit S, Schmiedel D, Petrich A, Gescher DM, Halle E, Musci M, Hetzer R, Gobel UB, Moter A. 2010. Fluorescence in situ hybridization to improve the diagnosis of endocarditis: a pilot study. Clin Microbiol Infect 16:767-773. http://dx.doi.org/10.1111/j.1469-0691.2009.02936.x.
-
(2010)
Clin Microbiol Infect
, vol.16
, pp. 767-773
-
-
Mallmann, C.1
Siemoneit, S.2
Schmiedel, D.3
Petrich, A.4
Gescher, D.M.5
Halle, E.6
Musci, M.7
Hetzer, R.8
Gobel, U.B.9
Moter, A.10
-
44
-
-
0031686821
-
Fluorescence in situ hybridization shows spatial distribution of as yet uncultured treponemes in biopsies from digital dermatitis lesions
-
Moter A, Leist G, Rudolph R, Schrank K, Choi BK, Wagner M, Gobel UB. 1998. Fluorescence in situ hybridization shows spatial distribution of as yet uncultured treponemes in biopsies from digital dermatitis lesions. Microbiology 144(Pt 9):2459-2467. http://dx.doi.org/10.1099/00221287-144-9-2459.
-
(1998)
Microbiology
, vol.144
, pp. 2459-2467
-
-
Moter, A.1
Leist, G.2
Rudolph, R.3
Schrank, K.4
Choi, B.K.5
Wagner, M.6
Gobel, U.B.7
-
45
-
-
0027372825
-
Use of a simplified cell blot technique and 16S rRNA-directed probes for identification of common environmental isolates
-
Braun-Howland EB, Vescio PA, Nierzwicki-Bauer SA. 1993. Use of a simplified cell blot technique and 16S rRNA-directed probes for identification of common environmental isolates. Appl Environ Microbiol 59: 3219-3224.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3219-3224
-
-
Braun-Howland, E.B.1
Vescio, P.A.2
Nierzwicki-Bauer, S.A.3
-
46
-
-
0038824029
-
Fluorescence in situ hybridization (FISH) for direct visualization of bacteria in periapical lesions of asymptomatic rootfilled teeth
-
Sunde PT, Olsen I, Gobel UB, Theegarten D, Winter S, Debelian GJ, Tronstad L, Moter A. 2003. Fluorescence in situ hybridization (FISH) for direct visualization of bacteria in periapical lesions of asymptomatic rootfilled teeth. Microbiology 149:1095-1102. http://dx.doi.org/10.1099/mic.0.26077-0.
-
(2003)
Microbiology
, vol.149
, pp. 1095-1102
-
-
Sunde, P.T.1
Olsen, I.2
Gobel, U.B.3
Theegarten, D.4
Winter, S.5
Debelian, G.J.6
Tronstad, L.7
Moter, A.8
-
47
-
-
0027339723
-
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
Wallner G, Amann R, Beisker W. 1993. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14:136-143. http://dx.doi.org/10.1002/cyto.990140205.
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
48
-
-
0014444144
-
A low-viscosity epoxy resin embedding medium for electron microscopy
-
Spurr AR. 1969. A low-viscosity epoxy resin embedding medium for electron microscopy. J Ultrastruct Res 26:31-43. http://dx.doi.org/10.1016/S0022-5320(69)90033-1.
-
(1969)
J Ultrastruct Res
, vol.26
, pp. 31-43
-
-
Spurr, A.R.1
-
49
-
-
0034980883
-
Approach to analyze interactions of microorganisms, hydrophobic substrates, and soil colloids leading to formation of composite biofilms, and to study initial events in microbiogeological processes
-
Lünsdorf H, Strompl C, Osborn AM, Bennasar A, Moore ER, Abraham WR, Timmis KN. 2001. Approach to analyze interactions of microorganisms, hydrophobic substrates, and soil colloids leading to formation of composite biofilms, and to study initial events in microbiogeological processes. Methods Enzymol 336:317-331. http://dx.doi.org/10.1016/S0076-6879(01)36598-9.
-
(2001)
Methods Enzymol
, vol.336
, pp. 317-331
-
-
Lünsdorf, H.1
Strompl, C.2
Osborn, A.M.3
Bennasar, A.4
Moore, E.R.5
Abraham, W.R.6
Timmis, K.N.7
-
50
-
-
42349102915
-
Containment of tumor-colonizing bacteria by host neutrophils
-
Westphal K, Leschner S, Jablonska J, Loessner H, Weiss S. 2008. Containment of tumor-colonizing bacteria by host neutrophils. Cancer Res 68:2952-2960. http://dx.doi.org/10.1158/0008-5472.CAN-07-2984.
-
(2008)
Cancer Res
, vol.68
, pp. 2952-2960
-
-
Westphal, K.1
Leschner, S.2
Jablonska, J.3
Loessner, H.4
Weiss, S.5
-
51
-
-
77956484714
-
Salmonella-allies in the fight against cancer
-
Leschner S, Weiss S. 2010. Salmonella-allies in the fight against cancer. J Mol Med (Berl) 88:763-773. http://dx.doi.org/10.1007/s00109-010-0636-z.
-
(2010)
J Mol Med (Berl)
, vol.88
, pp. 763-773
-
-
Leschner, S.1
Weiss, S.2
-
52
-
-
79959325084
-
Use of culture and molecular analysis to determine the effect of antibiotic treatment on microbial community diversity and abundance during exacerbation in patients with cystic fibrosis
-
Tunney MM, Klem ER, Fodor AA, Gilpin DF, Moriarty TF, McGrath SJ, Muhlebach MS, Boucher RC, Cardwell C, Doering G, Elborn JS, Wolfgang MC. 2011. Use of culture and molecular analysis to determine the effect of antibiotic treatment on microbial community diversity and abundance during exacerbation in patients with cystic fibrosis. Thorax 66:579-584. http://dx.doi.org/10.1136/thx.2010.137281.
-
(2011)
Thorax
, vol.66
, pp. 579-584
-
-
Tunney, M.M.1
Klem, E.R.2
Fodor, A.A.3
Gilpin, D.F.4
Moriarty, T.F.5
McGrath, S.J.6
Muhlebach, M.S.7
Boucher, R.C.8
Cardwell, C.9
Doering, G.10
Elborn, J.S.11
Wolfgang, M.C.12
-
53
-
-
65949091603
-
Antibiotic-resistant obligate anaerobes during exacerbations of cystic fibrosis patients
-
Worlitzsch D, Rintelen C, Bohm K, Wollschlager B, Merkel N, Borneff-Lipp M, Doring G. 2009. Antibiotic-resistant obligate anaerobes during exacerbations of cystic fibrosis patients. Clin Microbiol Infect 15:454-460. http://dx.doi.org/10.1111/j.1469-0691.2008.02659.x.
-
(2009)
Clin Microbiol Infect
, vol.15
, pp. 454-460
-
-
Worlitzsch, D.1
Rintelen, C.2
Bohm, K.3
Wollschlager, B.4
Merkel, N.5
Borneff-Lipp, M.6
Doring, G.7
-
54
-
-
34247855138
-
Microstructural differences between single-species and dual-species biofilms of Streptococcus mutans and Veillonella parvula, before and after exposure to chlorhexidine
-
Kara D, Luppens SB, van Marle J, Ozok R, ten Cate JM. 2007. Microstructural differences between single-species and dual-species biofilms of Streptococcus mutans and Veillonella parvula, before and after exposure to chlorhexidine. FEMS Microbiol Lett 271:90-97. http://dx.doi.org/10.1111/j.1574-6968.2007.00701.x.
-
(2007)
FEMS Microbiol Lett
, vol.271
, pp. 90-97
-
-
Kara, D.1
Luppens, S.B.2
van Marle, J.3
Ozok, R.4
ten Cate, J.M.5
-
55
-
-
42049112820
-
Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm
-
Luppens SB, Kara D, Bandounas L, Jonker MJ, Wittink FR, Bruning O, Breit TM, Ten Cate JM, Crielaard W. 2008. Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm. Oral Microbiol Immunol 23:183-189. http://dx.doi.org/10.1111/j.1399-302X.2007.00409.x.
-
(2008)
Oral Microbiol Immunol
, vol.23
, pp. 183-189
-
-
Luppens, S.B.1
Kara, D.2
Bandounas, L.3
Jonker, M.J.4
Wittink, F.R.5
Bruning, O.6
Breit, T.M.7
Ten Cate, J.M.8
Crielaard, W.9
-
56
-
-
84870980990
-
Nosocomial infections in leukemic and solid-tumor cancer patients: distribution, outcome and microbial spectrum of anaerobes
-
El-Sharif A, Elkhatib WF, Ashour HM. 2012. Nosocomial infections in leukemic and solid-tumor cancer patients: distribution, outcome and microbial spectrum of anaerobes. Future Microbiol 7:1423-1429. http://dx.doi.org/10.2217/fmb.12.125.
-
(2012)
Future Microbiol
, vol.7
, pp. 1423-1429
-
-
El-Sharif, A.1
Elkhatib, W.F.2
Ashour, H.M.3
-
57
-
-
80055101230
-
Anaerobic bacteria colonizing the lower airways in lung cancer patients
-
Rybojad P, Los R, Sawicki M, Tabarkiewicz J, Malm A. 2011. Anaerobic bacteria colonizing the lower airways in lung cancer patients. Folia Histochem Cytobiol 49:263-266. http://dx.doi.org/10.5603/FHC.2011.0036.
-
(2011)
Folia Histochem Cytobiol
, vol.49
, pp. 263-266
-
-
Rybojad, P.1
Los, R.2
Sawicki, M.3
Tabarkiewicz, J.4
Malm, A.5
|