Energetic modeling and single-molecule verification of dynamic regulation on receptor complexes by actin corrals and lipid raft domains

Journal of Chemical Physics

Volumn 141, Issue 21, 2014, Pages

  Lin, Chien Y ^a   Huang, Jung Y ^a   Lo, Leu Wei ^b  

^a NATIONAL CHIAO TUNG UNIVERSITY   (Taiwan)

^b NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL MEMBRANES; DIFFERENTIAL EQUATIONS; FENCES; MOLECULES;

CAHN-HILLIARD EQUATION; CELLULAR ENVIRONMENT; CONFINEMENT EFFECTS; EPIDERMAL GROWTH FACTOR RECEPTORS; FUNCTIONAL ARCHITECTURE; GENERALIZED LANGEVIN EQUATION; SINGLE MOLECULE LEVEL; SINGLE-MOLECULE TRACKING;

PROTEINS;

ACTIN; EPIDERMAL GROWTH FACTOR RECEPTOR;

BIOLOGICAL MODEL; CELL MEMBRANE; COMPUTER SIMULATION; DIFFUSION; HELA CELL LINE; HUMAN; METABOLISM; THERMODYNAMICS;

ACTINS; COMPUTER SIMULATION; DIFFUSION; HELA CELLS; HUMANS; MEMBRANE MICRODOMAINS; MODELS, BIOLOGICAL; RECEPTOR, EPIDERMAL GROWTH FACTOR; THERMODYNAMICS;

EID: 84915751050     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4902985     Document Type: Article

References (38)

1. R. Sharan, S. Suthram, R. M. Kelley, T. Kuhn, S. McCuine, P. Uetz, T. Sittler, R. M. Karp, and T. Ideker, Proc. Natl. Acad. Sci. U.S.A. 102, 1974 (2005). 10.1073/pnas.0409522102
2. J. M. Vaquerizas, S. K. Kummerfeld, S. A. Teichmann, and N. M. Luscombe, Nat. Rev. Genet. 10, 252 (2009). 10.1038/nrg2538
3. N. Yosef, L. Ungar, E. Zalckvar, A. Kimchi, M. Kupiec, E. Ruppin, and R. Sharan, Mol. Syst. Biol. 5, 248 (2009). 10.1038/msb.2009.3
4. L. Hodgkinson and R. M. Karp, Proc. Natl. Acad. Sci. U.S.A. 110, 10872 (2013). 10.1073/pnas.1308621110
5. J. E. Purvis and G. Lahav, Cell 152, 945 (2013). 10.1016/j.cell.2013.02.005
6. G. Iyengar and M. Rao, Proc. Natl. Acad. Sci. U.S.A. 111, 12402 (2014). 10.1073/pnas.1406608111
7. D. Lingwood and K. Simons, Science 327, 46 (2010). 10.1126/science.1174621
8. D. M. Owen, A. Magenau, D. Williamson, and K. Gaus, BioEssays 34, 739 (2012). 10.1002/bies.201200044
9. G. D. Paolo and P. D. Camilli, Nature (London) 443, 651 (2006). 10.1038/nature05185
10. J. Saarikangas, H. Zhao, and P. Lappalainen, Physiol. Rev. 90, 259 (2010). 10.1152/physrev.00036.2009
11. T. Balla, Physiol. Rev. 93, 1019 (2013). 10.1152/physrev.00028.2012
12. M. P. Sheetz, J. E. Sable, and H.-G. Döbereiner, Annu. Rev. Biophys. Biomol. Struct. 35, 417 (2006). 10.1146/annurev.biophys.35.040405.102017
13. K. Jaqaman and S. Grinstein, Trends Cell Biol. 22, 515 (2012). 10.1016/j.tcb.2012.07.006
14. N. C. Gauthier, T. A. Masters, and M. P. Sheetz, Trends Cell Biol. 22, 527 (2012). 10.1016/j.tcb.2012.07.005
15. A. Kusumi, T. K. Fujiwara, N. Morone, K. J. Yoshida, R. Chadda, M. Xie, R. S. Kasai, and K. G. Suzuki, Seminars Cell Develop. Biol. 23, 126 (2012). 10.1016/j.semcdb.2012.01.018
16. R. Zwanzig, Nonequilibrium Statistical Mechanics (Oxford University Press, 2001).
17. A. Bray, Adv. Phys. 43, 357 (1994). 10.1080/00018739400101505
18. J. W. Cahn and J. E. Hilliard, J. Chem. Phys. 28, 258 (1958). 10.1063/1.1744102
19. H. A. Lucero and P. W. Robbins, Arch. Biochem. Biophys. 426, 208 (2004). 10.1016/j.abb.2004.03.020
20. A. Viola and N. Gupta, Nat. Rev. Immunol. 7, 889 (2007). 10.1038/nri2193
21. K. Simons and J. L. Sampaio, Cold Spring Harb. Perspect. Biol. 3, a004697 (2011). 10.1101/cshperspect.a004697
22. D. V. Nicolau Jr., K. Burrage, R. G. Parton, and J. F. Hancock, Mol. Cell. Biol. 26, 313 (2006). 10.1128/MCB.26.1.313-323.2006
23. S. Türkcan, M. U. Richly, A. Alexandrou, and J.-B. Masson, PLoS ONE 8, e53073 (2013). 10.1371/journal.pone.0053073
24. D. L. Parton, A. Tek, M. Baaden, and M. S. P. Sansom, PLoS Comput. Biol. 9, e1003034 (2013). 10.1371/journal.pcbi.1003034
25. K. Murase, T. Fujiwara, Y. Umemura, K. Suzuki, R. Iino, H. Yamashita, M. Saito, H. Murakoshi, K. Ritchie, and A. Kusumi, Biophys. J. 86, 4075 (2004). 10.1529/biophysj.103.035717
26. A. Kusumi, C. Nakada, K. Ritchie, K. Murase, K. Suzuki, H. Murakoshi, R. S. Kasai, J. Kondo, and T. Fujiwara, Annu. Rev. Biophys. Biomol. Struct. 34, 351 (2005). 10.1146/annurev.biophys.34.040204.144637
27. J. Gómez-Llobregat, J. Buceta, and R. Reigada, Sci. Rep. 3, 2608 (2013). 10.1038/srep02608
28. T. Speck, J. Bialké, A. M. Menzel, and H. Löwen, Phys. Rev. Lett. 112, 218304 (2014). 10.1103/PhysRevLett.112.218304
29. B. Øksendal, Stochastic Differential Equations: An Introduction with Applications (Springer, 2010).
30. A. Sergé, N. Bertaux, H. Rigneault, and D. Marguet, Nat. Methods 5, 687 (2008). 10.1038/nmeth.1233
31. N. Meilhac, L. L. Guyader, L. Salomé, and N. Destainville, Phys. Rev. E 73, 011915 (2006). 10.1103/PhysRevE.73.011915
32. P. Rijken, W. Hage, P. van Bergen en Henegouwen, A. Verkleij, and J. Boonstra, J. Cell Sci. 100, 491 (1991).
33. M. P. Peppelenbosch, L. G. Tertoolen, W. J. Hage, and S. W. de Laat, Cell 74, 565 (1993). 10.1016/0092-8674(93)80057-L
34. C. Dietrich, Z. N. Volovyk, M. Levi, N. L. Thompson, and K. Jacobson, Proc. Natl. Acad. Sci. U.S.A. 98, 10642 (2001). 10.1073/pnas.191168698
35. N. Kahya, D. A. Brown, and P. Schwille, Biochemistry 44, 7479 (2005). 10.1021/bi047429d
36. S. J. Plowman, C. Muncke, R. G. Parton, and J. F. Hancock, Proc. Natl. Acad. Sci. U.S.A. 102, 15500 (2005). 10.1073/pnas.0504114102
37. M. Kirkham, A. Fujita, R. Chadda, S. J. Nixon, T. V. Kurzchalia, D. K. Sharma, R. E. Pagano, J. F. Hancock, S. Mayor, and R. G. Parton, J. Cell. Biol. 168, 465 (2005). 10.1083/jcb.200407078
38. B. Rotblat, I. A. Prior, C. Muncke, R. G. Parton, Y. Kloog, Y. I. Henis, and J. F. Hancock, Mol. Cell. Biol. 24, 6799 (2004). 10.1128/MCB.24.15.6799-6810.2004