Molecular epidemiology of nontuberculous mycobacteria isolates from clinical and environmental sources of a metropolitan city

PLoS ONE

Volumn 9, Issue 12, 2014, Pages

  Velayati, Ali Akbar ^a   Farnia, Parissa ^a   Mozafari, Mohadese ^a   Malekshahian, Donya ^a   Seif, Shima ^a   Rahideh, Snaz ^a   Mirsaeidi, Mehdi ^b  

^a SHAHID BEHESHTI UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ATYPICAL MYCOBACTERIUM; BACTERIAL GROWTH; BACTERIAL VIRULENCE; BACTERIUM DETECTION; BACTERIUM ISOLATE; ENVIRONMENTAL IMPACT ASSESSMENT; GEOGRAPHIC DISTRIBUTION; GROWTH RATE; HUMAN; MAJOR CLINICAL STUDY; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM FARCINOGENS; MYCOBACTERIUM FORTUITUM; MYCOBACTERIUM KANSASII; MYCOBACTERIUM SENEGALENSE; MYCOBACTERIUM SIMIAE; NONHUMAN; SOIL ANALYSIS; SOIL POLLUTION; SPECIES DIFFERENCE; WATER POLLUTION; WATER SAMPLING; CLASSIFICATION; ENVIRONMENT; IRAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MYCOBACTERIUM INFECTIONS, NONTUBERCULOUS; PREVALENCE;

CORYNEBACTERINEAE;

ENVIRONMENT; HUMANS; IRAN; MOLECULAR EPIDEMIOLOGY; MYCOBACTERIUM INFECTIONS, NONTUBERCULOUS; NONTUBERCULOUS MYCOBACTERIA; PREVALENCE; SOIL MICROBIOLOGY; WATER MICROBIOLOGY;

EID: 84915750884     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114428     Document Type: Article

References (30)

1. Cassidy PM, Hedberg K, Saulson A, McNelly E, Winthrop KL (2009) Nontuberculous mycobacterial disease prevalence and risk factors: a changing epidemiology. Clin Infect Dis 49: e124-129.
2. Falkinham JO 3rd (2009) Surrounded by mycobacteria: nontuberculous mycobacteria in the human environment. J Appl Microbiol 107: 356-367.
3. Masson AM, Prissick FH (1956) Cervical lymphadenitis in children caused by chromogenic Mycobacteria. Can Med Assoc J 75: 798-803.
4. Daley CL, Griffith DE (2010) Pulmonary non-tuberculous mycobacterial infections. Int J Tuberc Lung Dis 14: 665-671.
5. Mirsaeidi M, Machado RF, Garcia JG, Schraufnagel DE (2014) Nontuberculous mycobacterial disease mortality in the United States, 1999-2010: a population-based comparative study. PLoS One 9: e91879.
6. Martin-Casabona N, Bahrmand AR, Bennedsen J, Thomsen VO, Curcio M, et al. (2004) Non-tuberculous mycobacteria: patterns of isolation. A multi-country retrospective survey. Int J Tuberc Lung Dis 8: 1186-1193.
7. Mirsaeidi M, Farshidpour M, Ebrahimi G, Aliberti S, Falkinham JO 3rd (2014) Management of nontuberculous mycobacterial infection in the elderly. Eur J Intern Med.
8. Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I, et al. (2013) Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 381: 1551-1560.
9. Saifi M, Jabbarzadeh E, Bahrmand AR, Karimi A, Pourazar S, et al. (2013) HSP65-PRA identification of non-tuberculosis mycobacteria from 4892 samples suspicious for mycobacterial infections. Clin Microbiol Infect 19: 723-728.
10. Tabarsi P, Baghaei P, Farnia P, Mansouri N, Chitsaz E, et al. (2009) Nontuberculous mycobacteria among patients who are suspected for multidrug-resistant tuberculosis-need for earlier identification of nontuberculosis mycobacteria. Am J Med Sci 337: 182-184.
11. Mohammad Rahbar AL, Babazadeh H, Afshar Yavari S (2010) Isolation of rapid growing mycobacteria from soil and water in Iran. African Journal of Biotechnology 9: 3618-3621.
12. Portaels F, De Muynck A, Sylla MP (1988) Selective isolation of mycobacteria from soil: a statistical analysis approach. J Gen Microbiol 134: 849-855.
13. Velayati AA, Farnia P, Mozafari M, Malekshahian D, Farahbod AM, et al. (2014) Identification and Genotyping of Mycobacterium Tuberculosis Isolated From Water and Soil Samples of a Metropolitan City. Chest.
14. Neumann M, Schulze-Robbecke R, Hagenau C, Behringer K (1997) Comparison of methods for isolation of mycobacteria from water. Appl Environ Microbiol 63: 547-552.
15. Peters M, Muller C, Rusch-Gerdes S, Seidel C, Gobel U, et al. (1995) Isolation of atypical mycobacteria from tap water in hospitals and homes: is this a possible source of disseminated MAC infection in AIDS patients? J Infect 31: 39-44.
16. Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16: 1215.
17. Kim H, Kim SH, Shim TS, Kim MN, Bai GH, et al. (2005) PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp Heat Shock Protein 65 (hsp65) gene for differentiation of Mycobacterium spp. J Microbiol Methods 62: 199-209.
18. Telenti A, Marchesi F, Balz M, Bally F, Bottger EC, et al. (1993) Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol 31: 175-178.
19. Roth A, Reischl U, Streubel A, Naumann L, Kroppenstedt RM, et al. (2000) Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. J Clin Microbiol 38: 1094-1104.
20. Joao ICP, Antunes L, Nunes B, Jordao L. (2014) Identification of nontuberculosis mycobacteria by partial gene sequencing and public databases. nt J Mycobacteriol 3: 144-152.
21. Tadayon K, Mosavari N, Feizabadi MM (2013) An epidemiological perspective on bovine tuberculosis spotlighting facts and dilemmas in Iran, a historically zebu-dominant farming country. Iran J Microbiol 5: 1-13.
22. Hamid ME (2014) Current Perspectives on Mycobacterium farcinogenes and Mycobacterium senegalense, the Causal Agents of Bovine Farcy. Vet Med Int 2014: 247906.
23. Wong TC, Chan WF, Tsang WL, Yeung SH, Ip FK (2005) Mycobacterium farcinogenes infection after total hip arthroplasty. J Arthroplasty 20: 684-687.
24. Mirsaeidi M, Hadid W, Ericsoussi B, Rodgers D, Sadikot RT (2013) Non-tuberculous mycobacterial disease is common in patients with non-cystic fibrosis bronchiectasis. Int J Infect Dis 17: e1000-1004.
25. Shitrit D, Peled N, Bishara J, Priess R, Pitlik S, et al. (2008) Clinical and radiological features of Mycobacterium kansasii infection and Mycobacterium simiae infection. Respir Med 102: 1598-1603.
26. Samra Z, Kaufman L, Pitlik S, Shalit I, Bishara J (2005) Emergence of Mycobacterium simiae in respiratory specimens. Scand J Infect Dis 37: 838-841.
27. Hashemi-Shahraki A, Darban-Sarokhalil D, Heidarieh P, Feizabadi MM, Deshmir-Salameh S, et al. (2013) Mycobacterium simiae: a possible emerging pathogen in Iran. Jpn J Infect Dis 66: 475-479.
28. Mirsaeidi SM, Tabarsi P, Mardanloo A, Ebrahimi G, Amiri M, et al. (2006) Pulmonary mycobacterium Simiae infection and HTLV1 infection: an incidental co-infection or a predisposing factor? Monaldi Arch Chest Dis 65: 106-109.
29. Baghaei P, Tabarsi P, Farnia P, Marjani M, Sheikholeslami FM, et al. (2012) Pulmonary disease caused by Mycobacterium simiae in Iran's national referral center for tuberculosis. J Infect Dev Ctries 6: 23-28.
30. Hashemi-Shahraki A, Bostanabad SZ, Heidarieh P, Titov LP, Khosravi AD, et al. (2013) Species spectrum of nontuberculous mycobacteria isolated from suspected tuberculosis patients, identification by multi locus sequence analysis. Infect Genet Evol 20: 312-324.