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Volumn 68, Issue 11, 2014, Pages 1435-1442

Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry

Author keywords

Bacteria; Environment; Identification; MALDI TOF; Mass spectrometry; Waste

Indexed keywords


EID: 84912569270     PISSN: 03666352     EISSN: 13369075     Source Type: Journal    
DOI: 10.2478/s11696-014-0612-0     Document Type: Article
Times cited : (39)

References (30)
  • 1
    • 0000114030 scopus 로고
    • Identification of bacteria using mass spectrometry
    • Anhalt, J. P., & Fenselau, C. (1975). Identification of bacteria using mass spectrometry. Analytical Chemistry, 47, 219-225. DOI: 10.1021/ac60352a007.
    • (1975) Analytical Chemistry , vol.47 , pp. 219-225
    • Anhalt, J.P.1    Fenselau, C.2
  • 2
    • 79951480265 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization- time of flight mass spectrometry as an alternative to 16s rrna gene sequencing for identification of difficult-toidentify bacterial strains
    • Bizzini, A., Jaton, K., Romo, D., Bille, J., Prod'hom, G., & Greub, G. (2011). Matrix-assisted laser desorption ionization- time of flight mass spectrometry as an alternative to 16S rRNA gene sequencing for identification of difficult-toidentify bacterial strains. Journal of Clinical Microbiology, 49, 693-696. doi: 10.1128/jcm.01463-10.
    • (2011) Journal of Clinical Microbiology , vol.49 , pp. 693-696
    • Bizzini, A.1    Jaton, K.2    Romo, D.3    Bille, J.4    Prod'hom, G.5    Greub, G.6
  • 3
    • 26444462575 scopus 로고    scopus 로고
    • Diversity of alkaliphilic and alkalitolerant bacteria cultivated from decomposing reed rhizomes in a hungarian soda lake
    • Borsodi, A. K., Micsinai, A., Rusznyak, A., Vladar, P., Kovacs, G., Toth, E. M., & Marialigeti, K. (2005). Diversity of alkaliphilic and alkalitolerant bacteria cultivated from decomposing reed rhizomes in a Hungarian soda lake. Microbial Ecology, 50, 9-18. doi: 10.1007/s00248-004-0063-1.
    • (2005) Microbial Ecology , vol.50 , pp. 9-18
    • Borsodi, A.K.1    Micsinai, A.2    Rusznyak, A.3    Vladar, P.4    Kovacs, G.5    Toth, E.M.6    Marialigeti, K.7
  • 4
    • 84859981769 scopus 로고    scopus 로고
    • Matrix-assisted laser desorption ionization-time of flight mass spectrometry analysis of Grampositive, catalase-negative cocci not belonging to the Streptococcus or Enterococcus genus and benefits of database extension
    • the Danish MALDI-TOF MS Study Group
    • Christensen, J. J., Dargis, R., Hammer, M., Justesen, U. S., Nielsen, X. C., Kemp, M., & the Danish MALDI-TOF MS Study Group (2012). Matrix-assisted laser desorption ionization-time of flight mass spectrometry analysis of Grampositive, catalase-negative cocci not belonging to the Streptococcus or Enterococcus genus and benefits of database extension. Journal of Clinical Microbiology, 50, 1787-1791. doi: 10.1128/jcm.06339-11.
    • (2012) Journal of Clinical Microbiology , vol.50 , pp. 1787-1791
    • Christensen, J.J.1    Dargis, R.2    Hammer, M.3    Justesen, U.S.4    Nielsen, X.C.5    Kemp, M.6
  • 5
    • 5644227319 scopus 로고    scopus 로고
    • Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
    • Clarridge III J. E. (2004). Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clinical Microbiology Reviews, 17, 840-862. doi: 10.1128/cmr.17.4.840-862.2004.
    • (2004) Clinical Microbiology Reviews , vol.17 , pp. 840-862
    • Clarridge, J.E.1
  • 6
    • 85056039235 scopus 로고    scopus 로고
    • Application of MALDI-TOF mass spectrometry in clinical virology: A review
    • Cobo, F. (2013). Application of MALDI-TOF mass spectrometry in clinical virology: A review. The Open Virology Journal, 7, 84-90. doi: 10.2174/1874357920130927003.
    • (2013) The Open Virology Journal , vol.7 , pp. 84-90
    • Cobo, F.1
  • 8
    • 84912575721 scopus 로고    scopus 로고
    • Mass spectrometric identification of Propionibacterium isolates requires database enrichment
    • Edouard, S., Couderc, C., Raoult, D., & Fournier, P. E. (2012). Mass spectrometric identification of Propionibacterium isolates requires database enrichment. Advances in Microbiology, 2, 497-504. doi: 10.4236/aim.2012.24063.
    • (2012) Advances in Microbiology , vol.2 , pp. 497-504
    • Edouard, S.1    Couderc, C.2    Raoult, D.3    Fournier, P.E.4
  • 9
    • 70350542783 scopus 로고    scopus 로고
    • Performance of a matrixassisted laser desorption ionization-time-of-flight mass spectrometry system for the identification of bacterial isolates in the clinical routine laboratory
    • Eigner, U., Holfelder, M., Oberdorfer, K., Betz-Wild, U., Bertsch, D., & Fahr, A. M. (2009). Performance of a matrixassisted laser desorption ionization-time-of-flight mass spectrometry system for the identification of bacterial isolates in the clinical routine laboratory. Clinical Laboratory, 55, 289- 296.
    • (2009) Clinical Laboratory , vol.55 , pp. 289-296
    • Eigner, U.1    Holfelder, M.2    Oberdorfer, K.3    Betz-Wild, U.4    Bertsch, D.5    Fahr, A.M.6
  • 10
    • 0037979242 scopus 로고    scopus 로고
    • Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil
    • Ellis, R. J., Morgan, P., Weightman, A. J., & Fry, J. C. (2003). Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Applied and Environmental Microbiology, 69, 3223- 3230. doi: 10.1128/aem.69.6.3223-3230.2003.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 3223-3230
    • Ellis, R.J.1    Morgan, P.2    Weightman, A.J.3    Fry, J.C.4
  • 11
    • 79959996689 scopus 로고    scopus 로고
    • Rapid method for direct identification of bacteria in urine and blood culture samples by matrix-assisted laser desorption ionization time-offlight mass spectrometry: Intact cell vs. Extraction method
    • Ferreira, L., Sanchez-Juanes, F., M͡noz-Bellido, J. L., & Gonzalez-Buitrago, J. M. (2011). Rapid method for direct identification of bacteria in urine and blood culture samples by matrix-assisted laser desorption ionization time-offlight mass spectrometry: intact cell vs. extraction method. Clinical Microbiology and Infection, 17, 1007-1012. doi: 10.1111/j.1469-0691.2010.03339.x.
    • (2011) Clinical Microbiology and Infection , vol.17 , pp. 1007-1012
    • Ferreira, L.1    Sanchez-Juanes, F.2    M͡noz-Bellido, J.L.3    Gonzalez-Buitrago, J.M.4
  • 12
    • 0035192324 scopus 로고    scopus 로고
    • Bacterial amelioration of bauxite residue waste of industrial alumina plants
    • Hamdy, M. K., & Williams, F. S. (2001). Bacterial amelioration of bauxite residue waste of industrial alumina plants. Journal of Industrial Microbiology and Biotechnology, 27, 228-233. doi: 10.1038/sj.jim.7000181.
    • (2001) Journal of Industrial Microbiology and Biotechnology , vol.27 , pp. 228-233
    • Hamdy, M.K.1    Williams, F.S.2
  • 13
    • 0029777367 scopus 로고    scopus 로고
    • Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry
    • Holland, R. D., Wilkes, J. G., Rafii, F., Sutherland, J. B., Persons, C. C., Voorhees, K. J., & Lay, J. O. Jr. (1996). Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 10, 1227-1232. doi: 10.1002/(SICI)1097-0231(19960731)10:10<1227::AIDRCM659> 3.0.CO;2-6.
    • (1996) Rapid Communications in Mass Spectrometry , vol.10 , pp. 1227-1232
    • Holland, R.D.1    Wilkes, J.G.2    Rafii, F.3    Sutherland, J.B.4    Persons, C.C.5    Voorhees, K.J.6    Lay, J.O.7
  • 14
    • 0027368554 scopus 로고
    • Dormancy in stationary-phase cultures of micrococcus luteus: Flow cytometric analysis of starvation and resuscitation
    • Kaprelyants, A. S., & Kell, D. B. (1993). Dormancy in stationary-phase cultures of Micrococcus luteus: Flow cytometric analysis of starvation and resuscitation. Applied and Environmental Microbiology, 59, 3187-3196.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 3187-3196
    • Kaprelyants, A.S.1    Kell, D.B.2
  • 15
    • 4444357465 scopus 로고    scopus 로고
    • Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases
    • Keys, C. J., Dare, D. J., Sutton, H., Wells, G., Lunt, M., McKenna, T., McDowall, M., & Shah, H. N. (2004). Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases. Infection, Genetics and Evolution, 4, 221-242. doi: 10.1016/j.meegid.2004.02.004.
    • (2004) Infection, Genetics and Evolution , vol.4 , pp. 221-242
    • Keys, C.J.1    Dare, D.J.2    Sutton, H.3    Wells, G.4    Lunt, M.5    McKenna, T.6    McDowall, M.7    Shah, H.N.8
  • 18
    • 21244496849 scopus 로고    scopus 로고
    • Identification of archaea and some extremophilic bacteria using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry
    • Krader, P., & Emerson, D. (2004). Identification of archaea and some extremophilic bacteria using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry. Extremophiles, 8, 259-268. doi: 10.1007/s00792- 004-0382-7.
    • (2004) Extremophiles , vol.8 , pp. 259-268
    • Krader, P.1    Emerson, D.2
  • 19
    • 84856963255 scopus 로고    scopus 로고
    • Bacillus and relatives in foodborne illness
    • Logan, N. A. (2012). Bacillus and relatives in foodborne illness. Journal of Applied Microbiology, 112, 417-429. doi: 10.1111/j.1365-2672.2011.05204.x.
    • (2012) Journal of Applied Microbiology , vol.112 , pp. 417-429
    • Logan, N.A.1
  • 20
    • 79951724166 scopus 로고    scopus 로고
    • Characterization of bacterial communities at heavy-metal-contaminated sites
    • Margesin, R., Plaza, G. A., & Kasenbacher, S. (2011). Characterization of bacterial communities at heavy-metal-contaminated sites. Chemosphere, 82, 1583-1588. doi: 10.1016/j. chemosphere.2010.11.056.
    • Chemosphere , vol.82
    • Margesin, R.1    Plaza, G.A.2    Kasenbacher, S.3
  • 21
    • 84858594531 scopus 로고    scopus 로고
    • Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry
    • Martiny, D., Busson, L., Wybo, I., Ait El Haj, R., Dediste, A., & Vandenberg, O. (2012). Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Journal of Clinical Microbiology, 50, 1313-1325. doi: 10.1128/jcm.05971-11.
    • (2012) Journal of Clinical Microbiology , vol.50 , pp. 1313-1325
    • Martiny, D.1    Busson, L.2    Wybo, I.3    Ait El Haj, R.4    Dediste, A.5    Vandenberg, O.6
  • 22
  • 23
    • 84892561906 scopus 로고    scopus 로고
    • The landfill of industrial waste - luženec near the former Nickel Smelter at Sered Town as an example of environmental load
    • in Slovak
    • Michaeli, E., Boltižiar, M., Solar, V., & Ivanova, M. (2012). The landfill of industrial waste - luženec near the former Nickel Smelter at Sered Town as an example of environmental load. Životné prostredie, 46, 63-68. (in Slovak).
    • (2012) ŽIvotné Prostredie , vol.46 , pp. 63-68
    • Michaeli, E.1    Boltižiar, M.2    Solar, V.3    Ivanova, M.4
  • 24
    • 50949126366 scopus 로고    scopus 로고
    • Classification and identification of bacteria by mass spectrometry and computational analysis
    • Sauer, S., Freiwald, A., Maier, T., Kube, M., Reinhardt, R., Kostrzewa, M., & Geider, K. (2008). Classification and identification of bacteria by mass spectrometry and computational analysis. PLoS ONE, 3, e2843. doi: 10.1371/journal. pone.0002843.
    • (2008) PLoS, ONE , vol.3 , pp. e2843
    • Sauer, S.1    Freiwald, A.2    Maier, T.3    Kube, M.4    Reinhardt, R.5    Kostrzewa, M.6    Geider, K.7
  • 25
    • 5444266287 scopus 로고    scopus 로고
    • Soil microbial counts and identification of culturable bacteria in an extreme by arid zone
    • Su, J., Wu, Y., Ma, X., Zhang, G., Feng, H., & Zhang, Y. (2004). Soil microbial counts and identification of culturable bacteria in an extreme by arid zone. Folia Microbiologica, 49, 423- 429. doi: 10.1007/bf02931604.
    • (2004) Folia Microbiologica , vol.49 , pp. 423-429
    • Su, J.1    Wu, Y.2    Ma, X.3    Zhang, G.4    Feng, H.5    Zhang, Y.6
  • 26
    • 84860015342 scopus 로고    scopus 로고
    • Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories
    • Van Belkum, A., Welker, M., Erhard, M., & Chatellier, S. (2012). Biomedical mass spectrometry in today's and tomorrow's clinical microbiology laboratories. Journal of Clinical Microbiology, 50, 1513-1517. doi: 10.1128/jcm.00420-12.
    • (2012) Journal of Clinical Microbiology , vol.50 , pp. 1513-1517
    • Van Belkum, A.1    Welker, M.2    Erhard, M.3    Chatellier, S.4
  • 27
    • 33745936146 scopus 로고    scopus 로고
    • Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates
    • Vargha, M., Takats, Z., Konopka, A., & Nakatsu, C. H. (2006). Optimization of MALDI-TOF MS for strain level differentiation of Arthrobacter isolates. Journal of Microbiological Methods, 66, 399-409. doi: 10.1016/j.mimet.2006.01.006.
    • (2006) Journal of Microbiological Methods , vol.66 , pp. 399-409
    • Vargha, M.1    Takats, Z.2    Konopka, A.3    Nakatsu, C.H.4
  • 28
    • 77749286893 scopus 로고    scopus 로고
    • Highthroughput identification of bacteria and yeast by matrixassisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories
    • Van Veen, S. Q., Claas, E. C. J., & Kuijper, E. J. (2010). Highthroughput identification of bacteria and yeast by matrixassisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories. Journal of Clinical Microbiology, 48, 900-907. doi: 10.1128/jcm.02071-09.
    • (2010) Journal of Clinical Microbiology , vol.48 , pp. 900-907
    • Van Veen, S.Q.1    Claas, E.C.J.2    Kuijper, E.J.3
  • 29
    • 34047152220 scopus 로고    scopus 로고
    • The influence of soil heavy metals pollution on soil microbial biomass, enzyme activity, and community composition near a copper smelter
    • doi: 10.1016/j.ecoenv.2006.03.007
    • Wang, Y. P., Shi, J. Y., Wang, H., Lin, Q., Chen, X. C., & Chen, Y. X. (2007). The influence of soil heavy metals pollution on soil microbial biomass, enzyme activity, and community composition near a copper smelter. Ecotoxicology and Environmental Safety, 67, 75-81. doi: 10.1016/j.ecoenv.2006.03.007.
    • (2007) Ecotoxicology and Environmental Safety , vol.67 , pp. 75-81
    • Wang, Y.P.1    Shi, J.Y.2    Wang, H.3    Lin, Q.4    Chen, X.C.5    Chen, Y.X.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.