Strand Invasion Based Amplification (SIBA®): A novel isothermal DNA amplification technology demonstrating high specificity and sensitivity for a single molecule of target analyte

PLoS ONE

Volumn 9, Issue 11, 2014, Pages

  Hoser, Mark J ^a   Mansukoski, Hannu K ^b   Morrical, Scott W ^c   Eboigbodin, Kevin E ^d  

^a Canterbury Innovation Centre   (United Kingdom)

^b PFIZER GLOBAL RESEARCH AND DEVELOPMENT   (United Kingdom)

^c UNIVERSITY OF VERMONT COLLEGE OF MEDICINE   (United States)

^d Research and Development   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

2' O METHYL RNA; DOUBLE STRANDED DNA; INVASION OLIGONUCLEOTIDE; OLIGONUCLEOTIDE; RECOMBINASE; RNA; UNCLASSIFIED DRUG; BACTERIAL DNA; BACTERIAL PROTEIN; DNA; INVA PROTEIN, BACTERIA; PRIMER DNA; RNA PROBE;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM DETECTION; CONTROLLED STUDY; DNA SEQUENCE; DNA TEMPLATE; GENE AMPLIFICATION; GENE INSERTION; ISOTHERMAL NUCLEIC ACID AMPLIFICATION; NONHUMAN; POINT MUTATION; SALMONELLA TYPHIMURIUM; SENSITIVITY ANALYSIS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; BIOLOGICAL MODEL; GENETICS; HEAT; MOLECULAR GENETICS; NUCLEIC ACID AMPLIFICATION; NUCLEOTIDE SEQUENCE; PROCEDURES; REPRODUCIBILITY; RNA PROBE; SALMONELLA;

BACTERIAL PROTEINS; BASE SEQUENCE; DNA; DNA PRIMERS; DNA, BACTERIAL; HOT TEMPERATURE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REPRODUCIBILITY OF RESULTS; RNA PROBES; SALMONELLA;

EID: 84912535427     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0112656     Document Type: Article

References (26)

1. Craw P, Balachandran W (2012) Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review. Lab Chip 12: 2469-2486.
2. Asiello PJ, Baeumner AJ (2011) Miniaturized isothermal nucleic acid amplification, a review. Lab on a Chip 11: 1420-1430.
3. Gill P, Ghaemi A (2008) Nucleic acid isothermal amplification technologies: a review. Nucleosides Nucleotides Nucleic Acids 27: 224-243.
4. Chou Q, Russell M, Birch DE, Raymond J, Bloch W (1992) Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications. Nucleic Acids Research 20: 1717-1723.
5. Walker GT, Little MC, Nadeau JG, Shank DD (1992) Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system. Proceedings of the National Academy of Sciences 89: 392-396.
6. Walker GT, Fraiser MS, Schram JL, Little MC, Nadeau JG, et al. (1992) Strand displacement amplification - an isothermal, in vitro DNA amplification technique. Nucleic Acids Research 20: 1691-1696.
7. Vincent M, Xu Y, Kong H (2004) Helicase-dependent isothermal DNA amplification. EMBO Rep 5: 795-800.
8. Piepenburg O, Williams CH, Stemple DL, Armes NA (2006) DNA Detection Using Recombination Proteins. PLoS Biol 4: e204.
9. Compton J (1991) Nucleic acid sequence-based amplification. Nature 350: 91-92.
10. Taylor A, Joseph A, Okyere R, Gogichaishvili S, Musier-Forsyth K, et al. (2013) Isothermal quadruplex priming amplification for DNA-based diagnostics. Biophysical Chemistry 171: 1-8.
11. Demidov VV (2002) Rolling-circle amplification in DNA diagnostics: the power of simplicity. Expert Review of Molecular Diagnostics 2: 542-548.
12. Van Ness J, Van Ness LK, Galas DJ (2003) Isothermal reactions for the amplification of oligonucleotides. Proceedings of the National Academy of Sciences 100: 4504-4509.
13. Heid CA, Stevens J, Livak KJ, Williams PM (1996) Real time quantitative PCR. Genome Research 6: 986-994.
14. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, et al. (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Research 28: e63.
15. Lee D, La Mura M, Allnutt T, Powell W (2009) Detection of genetically modified organisms (GMOs) using isothermal amplification of target DNA sequences. BMC Biotechnology 9: 7.
16. Uemura N, Makimura K, Onozaki M, Otsuka Y, Shibuya Y, et al. (2008) Development of a loopmediated isothermal amplification method for diagnosing Pneumocystis pneumonia. Journal of Medical Microbiology 57: 50-57.
17. Stump MD, Cherry JL, Weiss RB (1999) The use of modified primers to eliminate cycle sequencing artifacts. Nucleic Acids Res 27: 4642-4648.
18. Maher RL, Morrical SW (2013) Coordinated Binding of Single-Stranded and Double-Stranded DNA by UvsX Recombinase. PLoS ONE 8: e66654.
19. Sweezy MA, Morrical SW (1997) Single-stranded DNA binding properties of the uvsy recombination protein of bacteriophage T4. Journal of Molecular Biology 266: 927-938.
20. Formosa T, Alberts BM (1986) Purification and characterization of the T4 bacteriophage uvsX protein. Journal of Biological Chemistry 261: 6107-6118.
21. Koenig VL, Carrier WL, Rahn RO (1974) Viscosity studies on dna and the observation of doublestranded and single-stranded breaks in a 40% dmso-phosphate buffer system. International Journal of Biochemistry 5: 601-611.
22. Euler M, Wang Y, Otto P, Tomaso H, Escudero R, et al. (2012) Recombinase Polymerase Amplification Assay for Rapid Detection of Francisella tularensis. Journal of Clinical Microbiology 50: 2234-2238.
23. Tong Y, Lemieux B, Kong H (2011) Multiple strategies to improve sensitivity, speed and robustness of isothermal nucleic acid amplification for rapid pathogen detection. BMC Biotechnology 11: 50.
24. Voet JG, Abeles RH (1970) The Mechanism of Action of Sucrose Phosphorylase: Isolation and properties of a beta-linked covalent glucose-enzyme complex. Journal of Biological Chemistry 245: 1020-1031.
25. Lavery PE, Kowalczykowski SC (1992) Enhancement of recA protein-promoted DNA strand exchange activity by volume-occupying agents. Journal of Biological Chemistry 267: 9307-9314.
26. Morrical SW, Alberts BM (1990) The UvsY protein of bacteriophage T4 modulates recombinationdependent DNA synthesis in vitro. Journal of Biological Chemistry 265: 15096-15103.