A widespread glutamine-sensing mechanism in the plant kingdom

Cell

Volumn 159, Issue 5, 2014, Pages 1188-1199

  Chellamuthu, Vasuki Ranjani ^a,c   Ermilova, Elena ^b   Lapina, Tatjana ^b   Lüddecke, Jan ^a   Minaeva, Ekaterina ^b   Herrmann, Christina ^a   Hartmann, Marcus D ^c   Forchhammer, Karl ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b ST PETERSBURG STATE UNIVERSITY   (Russian Federation)

^c MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; GLUTAMINE; N ACETYL LEVO GLUTAMATE KINASE; P II PROTEIN; POLYAMINE; SIGNAL PEPTIDE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; ACETYLGLUTAMATE KINASE; NITROGEN; NITROGEN REGULATORY PROTEIN; PHOSPHOTRANSFERASE;

ARABIDOPSIS THALIANA; ARTICLE; BRASSICACEAE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVATION; ENZYME REGULATION; NONHUMAN; PLANT; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN MOTIF; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; CHLAMYDOMONAS REINHARDTII; CLASSIFICATION; METABOLISM; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CHLAMYDOMONAS REINHARDTII; GLUTAMINE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NITROGEN; PHOSPHOTRANSFERASES (CARBOXYL GROUP ACCEPTOR); PII NITROGEN REGULATORY PROTEINS; PLANTS; SEQUENCE ALIGNMENT;

EID: 84911873997     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2014.10.015     Document Type: Article

References (61)

1. II regulatory protein and the uridylyltransferase-uridylyl-removing enzyme J. Biol. Chem. 250 1975 6264 6272
2. II signal transduction across domains of life reveals novel insights in NAGK control J. Mol. Biol. 389 2009 748 758
3. C. Bölling, and O. Fiehn Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation Plant Physiol. 139 2005 1995 2005
4. II functions during plastid evolution Planta 237 2013 451 462
5. II signal transduction protein in Chlamydomonas reinhardtii: localization and expression pattern Protist 164 2013 49 59
6. II Planta 223 2005 28 39
7. II protein controls arginine biosynthesis in Arabidopsis FEBS Lett. 580 2006 2015 2020
8. II mutants FEBS Lett. 582 2008 1061 1066
9. II signal transduction protein Proc. Natl. Acad. Sci. USA 107 2010 19760 19765
10. K. Forchhammer Glutamine signalling in bacteria Front. Biosci. 12 2007 358 370
11. II signal transducers: novel functional and structural insights Trends Microbiol. 16 2008 65 72
12. II protein in the cyanobacterium Synechococcus sp. strain PCC 7942 is modified by serine phosphorylation and signals the cellular N-status J. Bacteriol. 176 1994 84 91
13. C.H. Foyer, M. Parry, and G. Noctor Markers and signals associated with nitrogen assimilation in higher plants J. Exp. Bot. 54 2003 585 593
14. C. Fritz, C. Mueller, P. Matt, R. Feil, and M. Stitt Impact of the C-N status on the amino acid profile in tobacco source leaves Plant Cell Environ. 29 2006 2055 2076
15. E.H. Harris Chlamydomonas as a model organism Annu. Rev. Plant Physiol. Plant Mol. Biol. 52 2001 363 406
16. A. Heinrich, M. Maheswaran, U. Ruppert, and K. Forchhammer The Synechococcus elongatus P signal transduction protein controls arginine synthesis by complex formation with N-acetyl-L-glutamate kinase Mol. Microbiol. 52 2004 1303 1314
17. A. Heinrich, K. Woyda, K. Brauburger, G. Meiss, C. Detsch, J. Stülke, and K. Forchhammer Interaction of the membrane-bound GlnK-AmtB complex with the master regulator of nitrogen metabolism TnrA in Bacillus subtilis J. Biol. Chem. 281 2006 34909 34917
18. A. Hesketh, D. Fink, B. Gust, H.U. Rexer, B. Scheel, K. Chater, W. Wohlleben, and A. Engels The GlnD and GlnK homologues of Streptomyces coelicolor A3(2) are functionally dissimilar to their nitrogen regulatory system counterparts from enteric bacteria Mol. Microbiol. 46 2002 319 330
19. II-like protein in Arabidopsis: putative role in nitrogen sensing Proc. Natl. Acad. Sci. USA 95 1998 13965 13970
20. II signal transduction proteins: nitrogen regulation and beyond FEMS Microbiol. Rev. 37 2013 251 283
21. P. Jiang, and A.J. Ninfa α-ketoglutarate controls the ability of the Escherichia coli PII signal transduction protein to regulate the activities of NRII (NtrB) but does not control the binding of PII to NRII Biochemistry 48 2009 11514 11521
22. II trimer Biochemistry 48 2009 11522 11531
23. P. Jiang, and A.J. Ninfa A source of ultrasensitivity in the glutamine response of the bicyclic cascade system controlling glutamine synthetase adenylylation state and activity in Escherichia coli Biochemistry 50 2011 10929 10940
24. II signal transduction protein of Escherichia coli: genetic separation of interactions with protein receptors J. Bacteriol. 179 1997 4342 4353
25. A.J. Keys The re-assimilation of ammonia produced by photorespiration and the nitrogen economy of C3 higher plants Photosynth. Res. 87 2006 165 175
26. P.J. Lea, and B.J. Miflin Nitrogen assimilation and its relevance to crop improvement C.H. Foyer, H. Zhang, Annual Plant Reviews, Volume 42: Nitrogen Metabolism in Plants in the Post-Genomic Era 2010 Wiley-Blackwell Oxford 1 40
27. J.A. Leigh, and J.A. Dodsworth Nitrogen regulation in bacteria and archaea Annu. Rev. Microbiol. 61 2007 349 377
28. II controls the storage of nitrogen as arginine Proc. Natl. Acad. Sci. USA 104 2007 17644 17649
29. J.L. Llácer, I. Fita, and V. Rubio Arginine and nitrogen storage Curr. Opin. Struct. Biol. 18 2008 673 681
30. II signaling protein of N-acetyl-L-glutamate kinase from Synechococcus elongatus strain PCC 7942 J. Biol. Chem. 279 2004 55202 55210
31. II-mediated sensing of 2-oxoglutarate PLoS ONE 6 2011 e26327
32. II reveals novel structural elements unique to plants Biochemistry 46 2007 1477 1483
33. II in Arabidopsis thaliana J. Biol. Chem. 282 2007 35733 35740
34. II signal transduction proteins Trends Microbiol. 8 2000 172 179
35. II signal transduction proteins: sensors of α-ketoglutarate that regulate nitrogen metabolism Curr. Opin. Microbiol. 8 2005 168 173
36. A. Nunes-Nesi, A.R. Fernie, and M. Stitt Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions Mol. Plant 3 2010 973 996
37. II proteins Biochem. Soc. Trans. 39 2011 189 194
38. II signal transduction proteins are ATPases whose activity is regulated by 2-oxoglutarate Proc. Natl. Acad. Sci. USA 110 2013 12948 12953
39. B. Riens, G. Lohaus, D. Heineke, and H.W. Heldt Amino acid and sucrose content determined in the cytosolic, chloroplastic, and vacuolar compartments and in the phloem sap of spinach leaves Plant Physiol. 97 1991 227 233
40. II superfamily revised: a novel group and evolutionary insights J. Mol. Evol. 68 2009 322 336
41. II from Arabidopsis thaliana Plant J. 33 2003 353 360
42. II: implications for plastid carbon and nitrogen signaling Biochim. Biophys. Acta 1699 2004 145 154
43. II-like protein in rice Plant Cell Physiol. 45 2004 1768 1778
44. II protein structure identifies the 2-oxoglutarate binding site J. Mol. Biol. 400 2010 531 539
45. R.G. Uhrig, K.K. Ng, and G.B. Moorhead PII in higher plants: a modern role for an ancient protein Trends Plant Sci. 14 2009 505 511
46. H. Winter, D.G. Robinson, and H.W. Heldt Subcellular volumes and metabolite concentrations in barley leaves Planta 191 1993 180 190
47. H. Winter, D.G. Robinson, and H.W. Heldt Subcellular volumes and metabolite concentrations in spinach leaves Planta 193 1994 530 535
48. II signaling protein J. Biol. Chem. 289 2014 8960 8972
49. Z.L. Zheng Carbon and nitrogen nutrient balance signaling in plants Plant Signal. Behav. 4 2009 584 591
50. R. Bueno, G. Pahel, and B. Magasanik Role of glnB and glnD gene products in regulation of the glnALG operon of Escherichia coli J. Bacteriol. 164 1985 816 822
51. O. Emanuelsson, H. Nielsen, and G. von Heijne ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites Protein Sci. 8 1999 978 984
52. P. Emsley, and K. Cowtan Coot: model-building tools for molecular graphics Acta Crystallogr. D Biol. Crystallogr. 60 2004 2126 2132
53. R.M. Esnouf Further additions to MolScript version 1.4, including reading and contouring of electron-density maps Acta Crystallogr. D Biol. Crystallogr. 55 1999 938 940
54. D.G. Gibson, L. Young, R.Y. Chuang, J.C. Venter, C.A. Hutchison III, and H.O. Smith Enzymatic assembly of DNA molecules up to several hundred kilobases Nat. Methods 6 2009 343 345
55. W. Kabsch Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants J. Appl. Crystallogr. 26 1993 795 800
56. P.J. Kraulis MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24 1991 946 950
57. M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, and R. Lopez Clustal W and Clustal X version 2.0 Bioinformatics 23 2007 2947 2948
58. E.A. Merritt, and D.J. Bacon Raster3D: photorealistic molecular graphics Methods Enzymol. 277 1997 505 524
59. G.N. Murshudov, A.A. Vagin, A. Lebedev, K.S. Wilson, and E.J. Dodson Efficient anisotropic refinement of macromolecular structures using FFT Acta Crystallogr. D Biol. Crystallogr. 55 1999 247 255
60. F.W. Studier, A.H. Rosenberg, J.J. Dunn, and J.W. Dubendorff Use of T7 RNA polymerase to direct expression of cloned genes Methods Enzymol. 185 1990 60 89
61. A. Vagin, and A. Teplyakov An approach to multi-copy search in molecular replacement Acta Crystallogr. D Biol. Crystallogr. 56 2000 1622 1624