Modelling soil borne fungal pathogens of arable crops under climate change

International Journal of Biometeorology

Volumn 58, Issue 10, 2014, Pages 2071-2083

  Manici, L M ^a   Bregaglio, S ^b   Fumagalli, D ^c   Donatelli, M ^a  

^a ISTITUTO NAZIONALE DELLA NUTRIZIONE   (Italy)

^b UNIVERSITY OF MILAN   (Italy)

^c JOINT RESEARCH CENTRE   (Italy)

Author keywords

Foot rot; Large area simulation; Modelling crop diseases; Soil temperature; Spring sowing crops; Winter cereals

Indexed keywords

SOIL; WATER;

CHEMISTRY; CLIMATE CHANGE; CROP; EUROPE; FUNGUS; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; SOIL; THEORETICAL MODEL; WEATHER;

CLIMATE CHANGE; CROPS, AGRICULTURAL; EUROPE; FUNGI; MODELS, THEORETICAL; SOIL; SOIL MICROBIOLOGY; WATER; WEATHER;

EID: 84911808300     PISSN: 00207128     EISSN: 14321254     Source Type: Journal    
DOI: 10.1007/s00484-014-0808-6     Document Type: Article

References (74)

1. Aegerter BJ, Gordon TR, Davis RM (2000) Occurrence and pathogenicity of fungi associated with melon root rot and vine decline in California. Plant Dis 84:224–230, 10.1094/PDIS.2000.84.3.224
2. Anderson KA, Cunningham AA, Patel NG, Morales FJ, Epstein PR, Daszakc P (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. Trends Ecol Evol 19:535–544, 10.1016/j.tree.2004.07.021
3. Avilés M, Castillo S, Bascon J, Zea-Bonilla T, Martín-Sánchez PM, Pérez-Jiménez RM (2008) First report of Macrophomina phaseolina causing crown and root rot of strawberry in Spain. Plant Pathol 57:382. doi:10.1111/j.1365-3059.2007.01717.x
4. Backhouse D, Burgess LW (2002) Climatic analysis of the distribution of Fusarium graminearum, F. pseudograminearum and F. culmorum on cereals in Australia. Aust Plant Path 31:321–327. doi:10.1071/AP02026
5. Bechini L, Bocchi S, Maggiore T, Confalonieri R (2006) Parameterization of a crop growth and development simulation model at sub-model components level. An example for winter wheat (Triticum aestivum L.). Environ Model Softw 21:1042–1054. doi:10.1016/j.envsoft.2005.05.006
6. Bockus W, Shroyer J (1998) The impact of reduced tillage on soilborne plant pathogens. Annu Rev Plant Physiol Plant Mol Biol 36:485–500. doi:10.1146/annurev.phyto.36.1.485
7. Boller EF, Avilla J, Joerg E, Malavolta C, Wijnands FG, Esbjerg P (2004) Integrated production principles and technical guidelines. In: Boller EF, Avilla J, Joerg E, Malavolta C, Wijnands FG, Esbjerg P (eds) 3rd edn. IOBC wprs Bulletin Bulletin OILB. 27:(2)2004, http://www.iobc-wprs.org/ip_ipm/01_IOBC_Principles_and_Tech_Guidelines_2004.pdf Accessed 13 August 2013
8. Bregaglio S, Donatelli M, Confalonieri R (2013) Fungal infections of rice, wheat, and grape in Europe in 2030–2050. Agron Sust Devel 33:767–776. doi:10.1007/s13593-013-0149-6
9. Bristow KL (2002) Thermal conductivity. In: Methods of soil analysis. Part 4. Physical methods. In: Dane JH, Topp GC (eds). Madison, pp. 1209–1226
10. Broders KD, Wallhead MW, Austin GD, Lipps PE, Paul PA, Mullen RW, Dorrance AE (2009) Association of soil chemical and physical properties with Pythium species diversity, community composition, and disease incidence. Phytopathology 99:957–967. doi:10.1094/PHYTO-99-8-0957
11. Challinor AJ, Simelton ES, Fraser EDG, Hemming D, Collins M (2010) Increased crop failure due to climate change: assessing adaptation options using models and socio-economic data for wheat in China. Environ Res Lett 5:034012. doi:10.1088/1748-9326/5/3/034012
12. Coakley SM, Scherm H, Chakraborty S (1999) Climate change and plant disease management. Annu Rev Plant Physiol Plant Mol Biol 37:399–426. doi:10.1146/annurev.phyto.37.1.399
13. Colbach N, Maurin N, Huet P (1996) Influence of cropping system on foot rot of winter wheat in France. Crop Prot 15:295–305. doi:10.1016/0261-2194(95)00150-6
14. Confalonieri R, Bregaglio S, Acutis M (2010) A proposal of an indicator for quantifying model robustness based on the relationship between variability of errors and of explored conditions. Ecol Modell 221:960–964. doi:10.1016/j.ecolmodel.2009.12.003
15. Cook RJ (1980) Fusarium foot rot wheat and its control in the Pacific Northwest. Plant Dis 64:1061–1066
16. Daamen RA, Langerak CJ, Stol W (1991) Surveys of cereal diseases and pests in the Netherlands. 3. Monographella nivalis and Fusarium spp. in winter wheat fields and seed lots. Neth J Plant Path 97:105–114. doi:10.1007/BF01974274
17. Dhingra OD, Sinclair JB (1978) Biology and pathology of Macrophomina phaseolina. Imprensa da Universidade Federal de Viscosa, Brazil
18. Diekkrüger B, Nöersheuser P, Richter O (1995) Modelling pesticide dynamics of a loam site using HERBSIM and SIMULAT. Ecol Modell 81:111–119. 10.1016/0304-3800(94)00164-D
19. Dixon GR, Tilston EL (2010) Soil-borne pathogens and their interactions with the soil environment. In: Dixon GR, Tilston EL (eds) Chapter 6: soil microbiology and sustainable crop production. Springer, Dordrecht, pp 197–272
20. Donatelli M, Rizzoli AE (2008) A design for framework-independent model components of biophysical systems. In: Sànchez-Marrè M, Béjar J, Comas J, Rizzoli AE, Guariso G (eds) Proceedings of International Environmental Modelling and Software Society (iEMSs) 2008 International iEMSs Congress. Barcelona, Spain, pp 727–734
21. Donatelli M, Stöckle CO, Ceotto E, Rinaldi M (1997) Evaluation of CropSyst for cropping systems at two locations of northern and southern Italy. Eu J Agron 6:35–45. doi:10.1016/S1161-0301(96)02029-1
22. Donatelli M, Cerrani D, Fanchini F, Fumagalli D, Rizzoli AE (2012a) Enhancing model reuse via component centered modelling frameworks: the vision and example realizations. In: Proceedings of International Environmental Modelling and Software Society (iEMSs), 2012 International IEMSs Congress, Managing resources of a limited planet (eds. Seppelt R, Voinov AA, Lange S, Bankamp D). Leipzig, Germany, pp 1185–1192
23. Donatelli M, Fumagalli D, Zucchini A, Duveiller G, Nelson RL, Baruth B (2012b) A EU27 database of daily weather data derived from climate change scenarios for use with crop simulation models. In: Seppelt R, Voinov AA, Lange S, Bankamp D (eds) Proceedings of International Environmental Modelling and Software Society (iEMSs), 2012 International IEMSs Congress, Managing resources of a limited planet. Leipzig, pp. 868–875
24. Donatelli M, Bregaglio S, Confalonieri R, De Mascellis R, Acutis M (2014) Comparing modelling solutions at sub-model level: a case on soil temperature simulation. Environ Modell Softw (in press)
25. Dosio A, Paruolo P (2011) Bias correction of the ENSEMBLES high-resolution climate change projections for use by impact models: evaluation on the present climate. J Geophys Res 116, D16106. doi:10.1029/2011JD015934
26. El Araby ME, Kurle JE, Stetina RS (2003) First report of charcoal rot (Macrophomina phaseolina) on soybean in Minnesota. Plant Dis 87:202. doi:10.1094/PDIS.2003.87.2.202C
27. El-Hissy FT, Abdel-Kader MI (1980) Effect of five pesticides on the mycelial growth of some soil and pathogenic fungi. Z Allg Mikrobiol 20:257–263
28. European Commission (DG ENV) (2002) Integrated crop management system in the EU http://ec.europa.eu/environment/agriculture/pdf/icm_finalreport.pdf Accessed 13 August 2013
29. Gilligan CA (1983) Modeling of soilborne pathogens. Annu Rev Plant Physiol Plant Mol Biol 21:45–64. doi:10.1146/annurev.py.21.090183.000401
30. Glynne MD (1965) Crop sequence in relation to soil-borne pathogens. In: Baker KF, Snyder WC (eds) Ecology of soil-borne plant pathogens, prelude to biological control. University of California Press, Berkeley, pp 423–433
31. Gulya TJ, Krupinsky J, Draper M, Charlet LD (2002) First report of charcoal rot (Macrophomina phaseolina) on sunflower in North and South Dakota. Plant Dis 86:923–923. doi:10.1094/PDIS.2002.86.8.923A
32. Heffer LV, Johnson KB (2007) White mold. The plant health instructor. http://www.apsnet.org/edcenter/intropp/lessons/fungi/ascomycetes/Pages/WhiteMold.aspx Accessed 13 August 2013
33. Hendrix FF, Campbell WA (1973) Pythiums as plant pathogens. Annu Rev Plant Physiol Plant Mol Biol 11:77–98
34. Hersh MH, Vilgalys R, Clark JS (2012) Evaluating the impacts of multiple generalist fungal pathogens on temperate tree seedling survival. Ecology 93:511–520. doi:10.1890/11-0598.1
35. Horton BJ (2012) Models for estimation of hourly soil temperature at 5cm depth and for degree-day accumulation from minimum and maximum soil temperature. Soil Res 50:447–454. doi:10.1071/SR12165
36. IPCC (2007). Climate change 2007: the physical science basis. In: Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL (eds) Contribution of working group 1 to the fourth assessment report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge
37. Jara J, Stöckle CO (1999) Simulation of water uptake in maize, using different levels of process detail. Agron J 91:256–265. doi:10.2134/agronj1999.00021962009100020013x
38. Jimenez Diaz RM, Blanco Lopez MA, Sackston WE (1983) Incidence and distribution of charcoal rot of sunflower caused by Macrophomina phaseolina in Spain. Plant Dis 67:1033–1036
39. Jones JW, Ritchie JT (1990) Crop growth models. In: Hoffman GJ, Howell TA, Solomon KH (eds) Management of farm irrigation systems, Chap. 4. St. Joseph, MI, USA, pp 63–89
40. Juroszek P, von Tiedemann A (2011) Potential strategies and future requirements for plant disease management under a changing climate. Plant Path 60:100–112. doi:10.1111/j.1365-3059.2010.02410.x
41. Kim YK, Xiao CL, Rogers JD (2005) Influence of culture media and environmental factors on mycelial growth and pycnidial production of Sphaeropsis pyriputrescens. Mycologia 97:25–32. doi:10.3852/mycologia.97.1.25
42. Kluitenberg GJ (2002) Heat capacity and specific heat. In: Dane JH, Topp GC (eds) Methods of soil analysis. Part 4. Physical methods. Madison, WI, USA, pp 1201–1208
43. Lakshmi V, Jackson TJ, Zehrfuhs D (2003) Soil moisture–temperature relationships: results from two field experiments. Hydrol Process 17:3041–3057. doi:10.1002/hyp.1275
44. LaMondia J, Elmer WH, Mervosh TL, Cowles RS (2002) Integrated management of strawberry pests by rotation and intercropping. Crop Prot 21:837–846. doi:10.1016/S0261-2194(02)00050-9
45. Loo JA (2009) Ecological impacts of non-native invertebrates and fungi on terrestrial ecosystems. Biol Invasions 11:81–96. doi:10.1007/s10530-008-9321-3
46. Manici LM, Caputo F, Cerato C (1995) Temperature response of isolates of Macrophomina phaseolina from different climatic regions of sunflower production in Italy. Plant Dis 79:834–838
47. Marín S, Sanchis V, Magan N (1995) Water activity, temperature, and pH effects on growth of Fusarium moniliforme and Fusarium proliferatum isolates from maize. Can J Microbiol 41:1063–1070
48. Mathre DE (1997) Compendium of Barley Diseases. In: Mathre DE (ed) 2nd ed. American Phytopathological Society, St.Paul, MN, p 120
49. Mehta YR (1998) Constraints on the integrated management of spot blotch of wheat. In: Duveiller E, Dubin HJ, Reeves J, McNab A (eds) Helminthosporium blights of wheat: spot blotch and tan spot, CIMMYT. Mexico, pp. 18–27
50. Micale F, Genovese G (2004), Methodology of the MARS crop yield forecasting system. Meteorological data collection, processing and analysis. Publications Office: European Communities, Italy
51. Millar CS, Colhoun J (1969) Fusarium diseases in cereals: VI. Epidemiology of Fusarium nivale on wheat. Trans Br Mycol Soc 52:195–204
52. Millennium Ecosystem Assessment (MEA) (2005) Ecosystems and human well-being: synthesis. Island Press, Washington
53. Neitsch SL, Arnold JG, Kiniry JR, Srinivasan R, Williams JR (2002) Soil and water assessment tool. User’s manual. Grassland, Soil and Water Research Laboratory, Agricultural Research Service, Temple
54. Palmero D, de Cara M, Iglesias C, Tello JC (2009) The interactive effects of temperature and osmotic potential on the growth of aquatic isolates of Fusarium culmorum. Geomicrobiol J 26:321–325. doi:10.1080/01490450902748641
55. Parton WJ (1984) Predicting soil temperatures in a shortgrass steppe. Soil Sci 138:93–101
56. Parton WJ, Logan JA (1981) A model for diurnal variation in soil and air temperature. Agric Meteorol 23:205–216
57. Parton WJ, Hartman MD, Ojima DS, Schimel DS (1998) DAYCENT and its land surface submodel: description and testing. Global Planet Change 19:35–48. doi:10.1016/S0921-8181(98)00040-X
58. Pettitt TR, Parry DW, Polley RW (1996) Effect of temperature on the incidence of nodal foot rot symptoms in winter wheat crops in England and Wales caused by Fusarium culmorum and Microdochium nivale. Agr Forest Meteorol 79:233–242. doi:10.1016/0168-1923(95)02281-3
59. Porter JR, Semenov MA (2005) Crop responses to climatic variation. Philos T Roy Soc B 360:2021–2035. doi:10.1098/rstb.2005.1752303
60. Rao VUM, Rao AVMS, Rao GGSN, Satyanarayana T, Manikandan N, Venkateshwarlu B (2011) Impact of climate change on crop water requirements and adaptation strategies. Chapter 24 in. Challenges and Opportunities in Agrometeorology. (Eds. Attri SD, Rathore LS, Sivakumar MVK, Dash SK) pp 311–319
61. Redman RS, Dunigan DD, Rodriguez RJ (2001) Fungal symbiosis: from mutualism to parasitism, who controls the outcome, host or invader? New Phytol 151:705–716. doi:10.1046/j.0028-646x.2001.00210.x
62. Ritchie JT (1998) Soil water balance and plant water stress. In: Tsuji GY, Hoogenboom G, Thornton PK (eds) Understanding Options for Agricultural Production. Kluwer Academic Publishers, Dordrecht, pp 41–54
63. Schwartz HF (2012) Root rots of dry beans. Fact sheet no. 2.938. Crop series: diseases. Colorado State University Cooperative Extension Service. http://www.ext.colostate.edu/pubs/crops/02938.pdf Accessed 13 August 2013
64. Smiley RW, Patterson LM (1996) Pathogenic fungi associated with Fusarium foot rot of winter wheat in the semiarid Pacific Northwest USA. Plant Dis 80:944–949
65. Stöckle CO, Donatelli M, Nelson R (2003) CropSyst, a cropping systems simulation model. Eu J Agron 18:289–307. doi:10.1016/S1161-0301(02)00109-0
66. Sturz AV, Bernier CC (1989) Influence of crop rotations on winter wheat growth and yield in relation to the dynamics of pathogenic crown and root rot fungal complexes. Can J Plant Path 11:114–121
67. Tao F, Yokozawa M, Xu Y, Hayashi Y, Zhang Z (2006) Climate changes and trends in phenology and yields of field crops in China, 1981–2000. Agric For Meteorol 138:82–92. doi:10.1016/j.agrformet.2006.03.014
68. Vogt WG, Bedo D (2001) A preliminary weather-driven model for estimating the seasonal phenology and abundance of Lucilia cuprina. In: FLICS Conference (eds. Tasmanian Institute of Agricultural Research, University of Tasmania) pp. 62–64. Launceston, Tas
69. Walthall CL, Hatfield J, Backlund P et al (2012) Climate change and agriculture in the United States: effects and adaptation. USDA Technical Bulletin 1935, Washington
70. Wrather JA, Chambers AY, Fox JA, Moore WF, Sciumbato GL (1995) Soybean disease loss estimates for the southern United States, 1974 to 1994. Plant Dis 79:1076–1079
71. Yan W, Hunt LA (1999) An equation for modelling the temperature response of plants using only the cardinal temperatures. Ann Bot 84:607–614. doi:10.1006/anbo.1999.0955
72. Yang XB, Navi SS (2005) First report of charcoal rot epidemics caused by Macrophomina phaseolina in soybean in Iowa. Plant Dis 89:526–526. doi:10.1094/PD-89-0526B
73. Zadoks JC, Chang TT, Konzak CF (1974) A decimal code for the growth stages of cereals. Weed Res 14:415–421
74. Zveibil A, Freeman S (2005) First report of crown and root rot in strawberry caused by Macrophomina phaseolina in Israel. Plant Dis 89:1014–1014. doi:10.1094/PD-89-1014C