-
1
-
-
33847055114
-
How to infer gene networks from expression profiles
-
Bansal, M. et al. (2007) How to infer gene networks from expression profiles. Mol. Syst. Biol., 3, 78.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 78
-
-
Bansal, M.1
-
2
-
-
78049247492
-
HER-2 signaling, acquisition of growth factor independence, and regulation of biological networks associated with cell transformation
-
Bollig-Fischer, A. et al. (2010) HER-2 signaling, acquisition of growth factor independence, and regulation of biological networks associated with cell transformation. Cancer Res., 70, 7862-7873.
-
(2010)
Cancer Res.
, vol.70
, pp. 7862-7873
-
-
Bollig-Fischer, A.1
-
3
-
-
79952755960
-
Oncogene activation induces metabolic transformation resulting in insulin-independence in human breast cancer cells
-
Bollig-Fischer, A. et al. (2011) Oncogene activation induces metabolic transformation resulting in insulin-independence in human breast cancer cells. PLoS One, 6, e17959.
-
(2011)
PLoS One
, vol.6
, pp. e17959
-
-
Bollig-Fischer, A.1
-
4
-
-
84860512752
-
Semaphorin 3A suppresses tumor growth and metastasis in mice melanoma model
-
Chakraborty, G. et al. (2012) Semaphorin 3A suppresses tumor growth and metastasis in mice melanoma model. PLoS One, 7, e33633.
-
(2012)
PLoS One
, vol.7
, pp. e33633
-
-
Chakraborty, G.1
-
5
-
-
60549111070
-
Breast cancer cell lines contain functional cancer stem cells with metastatic capacity and a distinct molecular signature
-
Charafe-Jauffret, E. et al. (2009) Breast cancer cell lines contain functional cancer stem cells with metastatic capacity and a distinct molecular signature. Cancer Res., 69, 1302-1313.
-
(2009)
Cancer Res.
, vol.69
, pp. 1302-1313
-
-
Charafe-Jauffret, E.1
-
6
-
-
70350518233
-
Emerging roles of E2Fs in cancer: An exit from cell cycle control
-
Chen, H.Z. et al. (2009) Emerging roles of E2Fs in cancer: an exit from cell cycle control. Nat. Rev. Cancer, 9, 785-797.
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 785-797
-
-
Chen, H.Z.1
-
7
-
-
34547928128
-
P38MAPK-activated AKT in HER-2 overexpressing human breast cancer cells acts as an EGF-independent survival signal
-
Diehl, K.M. et al. (2007) p38MAPK-activated AKT in HER-2 overexpressing human breast cancer cells acts as an EGF-independent survival signal. J. Surg. Res., 142, 162-169.
-
(2007)
J. Surg. Res.
, vol.142
, pp. 162-169
-
-
Diehl, K.M.1
-
8
-
-
34548400259
-
A systems biology approach for pathway level analysis
-
Draghici, S. et al. (2007) A systems biology approach for pathway level analysis. Genome Res., 17, 1537-1545.
-
(2007)
Genome Res.
, vol.17
, pp. 1537-1545
-
-
Draghici, S.1
-
9
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
-
10
-
-
0032760412
-
Molecular cytogenetic analysis of 11 new breast cancer cell lines
-
Forozan, F. et al. (1999) Molecular cytogenetic analysis of 11 new breast cancer cell lines. Br. J. Cancer, 81, 1328-1334.
-
(1999)
Br. J. Cancer
, vol.81
, pp. 1328-1334
-
-
Forozan, F.1
-
11
-
-
79952284127
-
Hallmarks of cancer: The next generation
-
Hanahan, D. and Weinberg, R.A. (2011) Hallmarks of cancer: the next generation. Cell, 144, 646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
12
-
-
5644264889
-
The nuclear factor kappaB subunits RelA/p65 and c-Rel potentiate but are not required for Ras-induced cellular transformation
-
Hanson, J.L. et al. (2004) The nuclear factor kappaB subunits RelA/p65 and c-Rel potentiate but are not required for Ras-induced cellular transformation. Cancer Res., 64, 7248-7255.
-
(2004)
Cancer Res.
, vol.64
, pp. 7248-7255
-
-
Hanson, J.L.1
-
13
-
-
79952659846
-
Boosting signal-to-noise in complex biology: Prior knowledge is power
-
Ideker, T. et al. (2011) Boosting signal-to-noise in complex biology: prior knowledge is power. Cell, 144, 860-863.
-
(2011)
Cell
, vol.144
, pp. 860-863
-
-
Ideker, T.1
-
14
-
-
84890559183
-
FER kinase promotes breast cancer metastasis by regulating 6- and 1-integrin-dependent cell adhesion and anoikis resistance
-
Ivanova, I.A. et al. (2013) FER kinase promotes breast cancer metastasis by regulating 6- and 1-integrin-dependent cell adhesion and anoikis resistance. Oncogene, 32, 5582-5592.
-
(2013)
Oncogene
, vol.32
, pp. 5582-5592
-
-
Ivanova, I.A.1
-
15
-
-
37149028451
-
Tamoxifen: Catalyst for the change to targeted therapy
-
Jordan, V.C. (2008) Tamoxifen: catalyst for the change to targeted therapy. Eur. J. Cancer, 44, 30-38.
-
(2008)
Eur. J. Cancer
, vol.44
, pp. 30-38
-
-
Jordan, V.C.1
-
16
-
-
79955562657
-
Network modeling of the transcriptional effects of copy number aberrations in glioblastoma
-
Jornsten, R. et al. (2011) Network modeling of the transcriptional effects of copy number aberrations in glioblastoma. Mol. Syst. Biol., 7, 486-503.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 486-503
-
-
Jornsten, R.1
-
17
-
-
23144455923
-
Recent additions and improvements to the Onto-Tools
-
Khatri, P. et al. (2005) Recent additions and improvements to the Onto-Tools. Nucleic Acids Res., 33, W762-W765.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. W762-W765
-
-
Khatri, P.1
-
18
-
-
54049096261
-
HER2 regulates the mammary stem/progenitor cell population driving tumorigenesis and invasion
-
Korkaya, H. et al. (2008) HER2 regulates the mammary stem/progenitor cell population driving tumorigenesis and invasion. Oncogene, 27, 6120-6130.
-
(2008)
Oncogene
, vol.27
, pp. 6120-6130
-
-
Korkaya, H.1
-
19
-
-
22244455403
-
A mouse model of human breast cancer metastasis to human bone
-
Kuperwasser, C. et al. (2005) A mouse model of human breast cancer metastasis to human bone. Cancer Res., 65, 6130-6138.
-
(2005)
Cancer Res.
, vol.65
, pp. 6130-6138
-
-
Kuperwasser, C.1
-
20
-
-
0027362625
-
The retinoblastoma protein binds to a family of E2F transcription factors
-
Lees, J.A. et al. (1993) The retinoblastoma protein binds to a family of E2F transcription factors. Mol. Cell. Biol., 13, 7813-7825.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 7813-7825
-
-
Lees, J.A.1
-
21
-
-
0034659898
-
Genomics, gene expression and DNA arrays
-
Lockhart, D.J. and Winzeler, E.A. (2000) Genomics, gene expression and DNA arrays. Nature, 405, 827-836.
-
(2000)
Nature
, vol.405
, pp. 827-836
-
-
Lockhart, D.J.1
Winzeler, E.A.2
-
22
-
-
61449182121
-
Principles of cancer therapy: Oncogene and non-oncogene addiction
-
Luo, J. et al. (2009) Principles of cancer therapy: oncogene and non-oncogene addiction. Cell, 136, 823-837.
-
(2009)
Cell
, vol.136
, pp. 823-837
-
-
Luo, J.1
-
23
-
-
49249124575
-
The metabolic algorithm for P systems: Principles and applications
-
Manca, V. (2008) The metabolic algorithm for P systems: principles and applications. Theor. Comput. Sci., 404, 142-155.
-
(2008)
Theor. Comput. Sci.
, vol.404
, pp. 142-155
-
-
Manca, V.1
-
25
-
-
79251621707
-
Log-gain stoichiometric stepwise regression for MP systems
-
Manca, V. and Marchetti, L. (2011) Log-gain stoichiometric stepwise regression for MP systems. Int. J. Found. Comput. Sci., 22, 97-106.
-
(2011)
Int. J. Found. Comput. Sci.
, vol.22
, pp. 97-106
-
-
Manca, V.1
Marchetti, L.2
-
26
-
-
84861818200
-
Solving dynamical inverse problems by means of metabolic P systems
-
Manca, V. andMarchetti, L. (2012) Solving dynamical inverse problems by means of metabolic P systems. Biosystems, 109, 78-86.
-
(2012)
Biosystems
, vol.109
, pp. 78-86
-
-
Manca, V.1
Marchetti, L.2
-
27
-
-
84856097591
-
A methodology based on MP theory for gene expression analysis
-
Marchetti, L. and Manca, V. (2012) A methodology based on MP theory for gene expression analysis. Lect. Notes Comput. Sci., 7184, 300-313.
-
(2012)
Lect. Notes Comput. Sci.
, vol.7184
, pp. 300-313
-
-
Marchetti, L.1
Manca, V.2
-
28
-
-
67651007228
-
Cytogenetic and cDNA microarray expression analysis of MCF10 human breast cancer progression cell lines
-
Marella, N.V. et al. (2009) Cytogenetic and cDNA microarray expression analysis of MCF10 human breast cancer progression cell lines. Cancer Res., 69, 5946-5953.
-
(2009)
Cancer Res.
, vol.69
, pp. 5946-5953
-
-
Marella, N.V.1
-
29
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
Matys, V. et al. (2003) TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res., 31, 374-378.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 374-378
-
-
Matys, V.1
-
30
-
-
0027377648
-
Xenograft model of progressive human proliferative breast disease
-
Miller, F.R. et al. (1993) Xenograft model of progressive human proliferative breast disease. J. Natl Cancer. Inst., 85, 1725-1732.
-
(1993)
J. Natl Cancer. Inst.
, vol.85
, pp. 1725-1732
-
-
Miller, F.R.1
-
31
-
-
82055187255
-
ERalpha-dependent E2F transcription can mediate resistance to estrogen deprivation in human breast cancer
-
Miller, T.W. et al. (2011) ERalpha-dependent E2F transcription can mediate resistance to estrogen deprivation in human breast cancer. Cancer Discov., 1, 338-351.
-
(2011)
Cancer Discov.
, vol.1
, pp. 338-351
-
-
Miller, T.W.1
-
32
-
-
77953015096
-
A multilevel data integration resource for breast cancer study
-
Mosca, E. et al. (2010) A multilevel data integration resource for breast cancer study. BMC Syst. Biol., 4, 76.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 76
-
-
Mosca, E.1
-
33
-
-
0033553466
-
Oncogenic Ras enhances NF-kappaB transcriptional activity through Raf-dependent and Raf-independent mitogen-activated protein kinase signaling pathways
-
Norris, J.L. and Baldwin, A.S. Jr. (1999) Oncogenic Ras enhances NF-kappaB transcriptional activity through Raf-dependent and Raf-independent mitogen-activated protein kinase signaling pathways. J. Biol. Chem., 274, 13841-13846.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 13841-13846
-
-
Norris, J.L.1
Baldwin, A.S.2
-
34
-
-
84857112420
-
Modeling ductal carcinoma in situ: A HER2-Notch3 collaboration enables luminal filling
-
Pradeep, C.R. et al. (2012) Modeling ductal carcinoma in situ: a HER2-Notch3 collaboration enables luminal filling. Oncogene, 31, 907-917.
-
(2012)
Oncogene
, vol.31
, pp. 907-917
-
-
Pradeep, C.R.1
-
35
-
-
0347201147
-
Multiclass cancer diagnosis using tumor gene expression signatures
-
Ramaswamy, S. et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures. Proc. Natl Acad. Sci. USA, 98, 15149-15154.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 15149-15154
-
-
Ramaswamy, S.1
-
36
-
-
0037047161
-
Cluster analysis of gene expression dynamics
-
Ramoni, M.F. et al. (2002) Cluster analysis of gene expression dynamics. Proc. Natl Acad. Sci. USA, 99, 9121-9126.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 9121-9126
-
-
Ramoni, M.F.1
-
37
-
-
1642377561
-
ONCOMINE: A cancer microarray database and integrated data-mining platform
-
Rhodes, D.R. et al. (2004) ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia, 6, 1-6.
-
(2004)
Neoplasia
, vol.6
, pp. 1-6
-
-
Rhodes, D.R.1
-
38
-
-
71549132510
-
Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells
-
Saeki, Y. et al. (2009) Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells. BMC Genomics, 10, 545-561.
-
(2009)
BMC Genomics
, vol.10
, pp. 545-561
-
-
Saeki, Y.1
-
39
-
-
37249003928
-
Oncogene addiction: Setting the stage for molecularly targeted cancer therapy
-
Sharma, S.V. and Settleman, J. (2007) Oncogene addiction: setting the stage for molecularly targeted cancer therapy. Genes Dev., 21, 3214-3231.
-
(2007)
Genes Dev.
, vol.21
, pp. 3214-3231
-
-
Sharma, S.V.1
Settleman, J.2
-
40
-
-
67649849871
-
Integrin beta1-focal adhesion kinase signaling directs the proliferation of metastatic cancer cells disseminated in the lungs
-
Shibue, T. and Weinberg, R.A. (2009) Integrin beta1-focal adhesion kinase signaling directs the proliferation of metastatic cancer cells disseminated in the lungs. Proc. Natl Acad. Sci. USA, 106, 10290-10295.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 10290-10295
-
-
Shibue, T.1
Weinberg, R.A.2
-
41
-
-
0033567291
-
The stress-activated protein kinase pathways
-
Tibbles, L.A. and Woodgett, J.R. (1999) The stress-activated protein kinase pathways. Cell. Mol. Life Sci., 55, 1230-1254.
-
(1999)
Cell. Mol. Life Sci.
, vol.55
, pp. 1230-1254
-
-
Tibbles, L.A.1
Woodgett, J.R.2
-
42
-
-
80055090025
-
Most random gene expression signatures are significantly associated with breast cancer outcome
-
Venet, D. et al. (2011) Most random gene expression signatures are significantly associated with breast cancer outcome. PLoS Comput. Biol., 7, e1002240.
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. e1002240
-
-
Venet, D.1
-
43
-
-
80051625929
-
Dissecting Therapeutic Resistance to RAF Inhibition in Melanoma by Tumor Genomic Profiling
-
Wagle, N. et al. (2011) Dissecting Therapeutic Resistance to RAF Inhibition in Melanoma by Tumor Genomic Profiling. J. Clin. Oncol., 29, 3085-3896.
-
(2011)
J. Clin. Oncol.
, vol.29
, pp. 3085-3896
-
-
Wagle, N.1
|