Trowel: A fast and accurate error correction module for Illumina sequencing reads

Bioinformatics

Volumn 30, Issue 22, 2014, Pages 3264-3265

  Lim, Eun Cheon ^a   Müller, Jonas ^a   Hagmann, Jölrg ^a   Henz, Stefan R ^a   Kim, Sang Tae ^a   Weigel, Detlef ^a  

^a MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; PROCEDURES;

ALGORITHMS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SOFTWARE;

EID: 84911413468     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu513     Document Type: Article

References (8)

1. Kelley, D.R. et al. (2010) Quake: quality-aware detection and correction of sequencing errors. Genome Biol., 11, R116.
2. Le, H.S. et al. (2013) Probabilistic error correction for RNA sequencing. Nucleic Acids Res., 41, e109.
3. Liu, Y. et al. (2013) Musket: a multistage k-mer spectrum based error corrector for Illumina sequence data. Bioinformatics, 29, 308-315.
4. Pevzner, P.A. et al. (2001) An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci. USA, 98, 9748-9753.
5. Salmela, L. (2010) Correction of sequencing errors in a mixed set of reads. Bioinformatics, 26, 1284-1290.
6. Salmela, L. and Schröder, J. (2011) Correcting errors in short reads by multiple alignments. Bioinformatics, 27, 1455-1461.
7. Yang, L. et al. (2011) Genomewide characterization of non-polyadenylated RNAs. Genome Biol., 12, R16.
8. Yang, X. et al. (2012) A survey of error-correction methods for next-generation sequencing. Brief. Bioinform, 14, 56-66.