Figmop: A profile HMM to identify genes and bypass troublesome gene models in draft genomes

Bioinformatics

Volumn 30, Issue 22, 2014, Pages 3266-3267

  Curran, David M ^a   Gilleard, John S ^a   Wasmuth, James D ^a  

^a UNIVERSITY OF CALGARY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME P450;

BIOLOGICAL MODEL; COMPUTER PROGRAM; GENE; GENETICS; GENOMICS; MULTIGENE FAMILY; PROBABILITY; PROCEDURES;

CYTOCHROME P-450 ENZYME SYSTEM; GENES; GENOMICS; MARKOV CHAINS; MODELS, GENETIC; MULTIGENE FAMILY; SOFTWARE;

EID: 84911391765     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu544     Document Type: Article

References (4)

1. Bailey, T.L. et al. (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res., 34, W369-W373.
2. Camacho, C. et al. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10, 421.
3. Laing, R. et al. (2013) The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biol., 14, R88.
4. Picardi, E. and Pesole, G. (2010) Computational methods for ab initio and comparative gene finding. Methods Mol. Biol., 609, 269-284.