메뉴 건너뛰기




Volumn 1, Issue , 2011, Pages

Proteome-wide post-translational modification statistics: Frequency analysis and curation of the swiss-prot database

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84910679144     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep00090     Document Type: Article
Times cited : (719)

References (17)
  • 1
    • 0032754473 scopus 로고    scopus 로고
    • On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database
    • Apweiler, R., Hermjakob, H. & Sharon, N. On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim. Biophys. Acta, Gen. Subj. 1473, 4-8 (1999).
    • (1999) Biochim. Biophys. Acta, Gen. Subj. , vol.1473 , pp. 4-8
    • Apweiler, R.1    Hermjakob, H.2    Sharon, N.3
  • 2
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch, A. & Apweiler, R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28, 45-48 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 3
    • 0032919585 scopus 로고    scopus 로고
    • O-GLYCBASE version 4.0: A revised database of O-glycosylated proteins
    • Gupta, R., Birch, H., Rapacki, K., Brunak, S.&Hansen, J. E. O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins. Nucleic Acids Res. 27, 370-372 (1999).
    • (1999) Nucleic Acids Res. , vol.27 , pp. 370-372
    • Gupta, R.1    Birch, H.2    Rapacki, K.3    Brunak, S.4    Hansen, J.E.5
  • 4
    • 44149105911 scopus 로고    scopus 로고
    • PHOSIDA (phosphorylation site database): Management, structural and evolutionary investigation, and prediction of phosphosites
    • Gnad, F. et al. PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites. Genome Biol. 8, R250 (2007).
    • (2007) Genome Biol. , vol.8 , pp. R250
    • Gnad, F.1
  • 5
    • 13244289881 scopus 로고    scopus 로고
    • Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins
    • Diella, F. et al. Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics 5, 79 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 79
    • Diella, F.1
  • 6
    • 9144236198 scopus 로고    scopus 로고
    • Human protein reference database as a discovery resource for proteomics
    • Peri, S. et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 32, D497-D501 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. D497-D501
    • Peri, S.1
  • 7
    • 0035259539 scopus 로고    scopus 로고
    • Annotation of glycoproteins in the SWISS-PROT database
    • Jung, E., Veuthey, A.-L., Gasteiger, E. & Bairoch, A. Annotation of glycoproteins in the SWISS-PROT database. PROTEOMICS 1, 262-268 (2001).
    • (2001) PROTEOMICS , vol.1 , pp. 262-268
    • Jung, E.1    Veuthey, A.-L.2    Gasteiger, E.3    Bairoch, A.4
  • 8
    • 2942557190 scopus 로고    scopus 로고
    • Annotation of post-translational modifications in the Swiss-Prot knowledge base
    • Farriol-Mathis, N. et al. Annotation of post-translational modifications in the Swiss-Prot knowledge base. PROTEOMICS 4, 1537-1550 (2004).
    • (2004) PROTEOMICS , vol.4 , pp. 1537-1550
    • Farriol-Mathis, N.1
  • 9
    • 33644876212 scopus 로고    scopus 로고
    • DbPTM: An information repository of protein post-translational modification
    • Lee, T.-Y. et al. dbPTM: an information repository of protein post-translational modification. Nucleic Acids Res. 34, D622-D627.
    • Nucleic Acids Res. , vol.34 , pp. D622-D627
    • Lee, T.-Y.1
  • 10
    • 78149309682 scopus 로고    scopus 로고
    • PTMScout: A web resource for analysis of high-throughput post-translational proteomic studies
    • Naegle, K. M. et al. PTMScout: A web resource for analysis of high-throughput post-translational proteomic studies. Mol. Cell. Proteomics, 2558-2570 (2010).
    • (2010) Mol. Cell. Proteomics , vol.2558-2570
    • Naegle, K.M.1    Al, E.2
  • 11
    • 0037434980 scopus 로고    scopus 로고
    • From genomics to proteomics
    • Tyers, M. &Mann, M. From genomics to proteomics. Nature 422, 193-197 (2003).
    • (2003) Nature , vol.422 , pp. 193-197
    • Tyers, M.1    Mann, M.2
  • 12
    • 34247559318 scopus 로고    scopus 로고
    • UbiProt: A database of ubiquitylated proteins
    • Chernorudskiy, A. et al. UbiProt: a database of ubiquitylated proteins. BMC Bioinformatics 8, 126 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 126
    • Chernorudskiy, A.1
  • 13
    • 77951870981 scopus 로고    scopus 로고
    • A Novel Approach for Untargeted Post-translational Modification Identification Using Integer Linear Optimization and Tandem Mass Spectrometry
    • Baliban, R. C. et al. A Novel Approach for Untargeted Post-translational Modification Identification Using Integer Linear Optimization and Tandem Mass Spectrometry. Mol. Cell. Proteomics 9, 764-779 (2010).
    • (2010) Mol. Cell. Proteomics , vol.9 , Issue.764-779
    • Baliban, R.C.1    Al, E.2
  • 14
    • 71049141077 scopus 로고    scopus 로고
    • A Mixed Integer Linear Optimization Framework for the Identification and Quantification of Targeted Post-translational Modifications of Highly Modified Proteins Using Multiplexed Electron Transfer Dissociation Tandem Mass Spectrometry
    • DiMaggio, P. A., Young, N. L., Baliban, R. C., Garcia, B. A. & Floudas, C. A. A Mixed Integer Linear Optimization Framework for the Identification and Quantification of Targeted Post-translational Modifications of Highly Modified Proteins Using Multiplexed Electron Transfer Dissociation Tandem Mass Spectrometry. Mol. Cell. Proteomics 8, 2527-2543 (2009).
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 2527-2543
    • Dimaggio, P.A.1    Young, N.L.2    Baliban, R.C.3    Garcia, B.A.4    Floudas, C.A.5
  • 15
    • 78651277061 scopus 로고    scopus 로고
    • The significance, development and progress of high-throughput combinatorial histone code analysis
    • Young, N., DiMaggio, P. & Garcia, B. The significance, development and progress of high-throughput combinatorial histone code analysis. Cell. Mol. Life Sci. 67, 3983-4000 (2010).
    • (2010) Cell. Mol. Life Sci. , vol.67 , Issue.3983-4000
    • Young, N.1    Dimaggio, P.2    Garcia, B.3
  • 16
    • 75549087930 scopus 로고    scopus 로고
    • BioNumbers-the database of key numbers in molecular and cell biology
    • Milo, R., Jorgensen, P., Moran, U., Weber, G. & Springer, M. BioNumbers-the database of key numbers in molecular and cell biology. Nucleic Acids Res. 38, D750-D753 (2010).
    • (2010) Nucleic Acids Res. , Issue.38 , pp. D750-D753
    • Milo, R.1    Jorgensen, P.2    Moran, U.3    Weber, G.4    Springer, M.5
  • 17
    • 0036500993 scopus 로고    scopus 로고
    • Systems Biology: A Brief Overview
    • Kitano, H. Systems Biology: A Brief Overview. Science 295, 1662-1664 (2002).
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.