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Workflow Patterns
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Tool-supported enhancement of diagnosis in model-driven verification
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Bakera, M., Margaria, T., Renner, C., Steffen, B.: Tool-supported enhancement of diagnosis in model-driven verification. Innovations in Systems and Software Engineering 5, 211-228 (2009), http://dx. doi. org/10. 1007/s11334-009-0091-6.
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Innovations in Systems and Software Engineering
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Bakera, M.1
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Flux-P: Automating Metabolic Flux Analysis
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Ebert, B. E., Lamprecht, A. L., Steffen, B., Blank, L. M.: Flux-P: Automating Metabolic Flux Analysis. Metabolites 2(4), 872-890 (2012), http://www. mdpi. com/2218-1989/2/4/872.
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Metabolites
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Future Generation Computer Systems (in press)
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Garijo, D., Alper, P., Belhajjame, K., Corcho, O., Gil, Y., Goble, C.: Common motifs in scientific workflows: An empirical analysis. Future Generation Computer Systems (2013) (in press), http://www. sciencedirect. com/science/article/pii/S0167739X13001970.
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Common motifs in scientific workflows: An empirical analysis
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Garijo, D.1
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Belhajjame, K.3
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Goble, C.6
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myExperiment: A repository and social network for the sharing of bioinformatics workflows
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Goble, C. A., Bhagat, J., Aleksejevs, S., Cruickshank, D., Michaelides, D., Newman, D., Borkum, M., Bechhofer, S., Roos, M., Li, P., Roure, D. D.: myExperiment: A repository and social network for the sharing of bioinformatics workflows. Nucleic Acids Research 38(suppl. 2), W677-W682 (2010), http://nar. oxfordjournals. org/cgi/content/abstract/38/suppl 2/W677.
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Bio-jETI: A framework for semanticsbased service composition
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Lamprecht, A. L., Margaria, T., Steffen, B.: Bio-jETI: A framework for semanticsbased service composition. BMC Bioinformatics 10(suppl. 10), S8 (2009).
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BMC Bioinformatics
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GeneFisher-P: Variations of GeneFisher as processes in Bio-jETI
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Lamprecht, A. L., Margaria, T., Steffen, B., Sczyrba, A., Hartmeier, S., Giegerich, R.: GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics 9(suppl. 4), S13 (2008), http://www. ncbi. nlm. nih. gov/pubmed/18460174.
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Synthesis-Based Loose Programming
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Porto, Portugal, (September
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Lamprecht, A. L., Naujokat, S., Margaria, T., Steffen, B.: Synthesis-Based Loose Programming. In: Proc. of the 7th Int. Conf. on the Quality of Information and Communications Technology (QUATIC 2010), Porto, Portugal, pp. 262-267 (September 2010).
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Lamprecht, A.L.1
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84910620132
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Trends in Use of Scientific Workflows: Insights from a Public Repository and Recommendations for Best Practices
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Littauer, R., Ram, K., Ludäscher, B., Michener, W., Koskela, R.: Trends in Use of Scientific Workflows: Insights from a Public Repository and Recommendations for Best Practices. In: 7th International Digital Curation Conference (2011).
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34249867762
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Model-based Design of Distributed Collaborative Bioinformatics Processes in the jABC
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IEEE Computer Society, Los Alamitos
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Margaria, T., Kubczak, C., Njoku, M., Steffen, B.: Model-based Design of Distributed Collaborative Bioinformatics Processes in the jABC. In: Proceedings of the 11th IEEE International Conference on Engineering of Complex Computer Systems (ICECCS 2006), pp. 169-176. IEEE Computer Society, Los Alamitos (2006).
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Margaria, T.1
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Bio-jETI: A service integration, design, and provisioning platform for orchestrated bioinformatics processes
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Margaria, T., Kubczak, C., Steffen, B.: Bio-jETI: A service integration, design, and provisioning platform for orchestrated bioinformatics processes. BMC Bioinformatics 9(suppl. 4), S12 (2008).
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jETI: A Tool for Remote Tool Integration
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Halbwachs, N., Zuck, L.D. (eds.),,. Springer, Heidelberg
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Margaria, T., Nagel, R., Steffen, B.: jETI: A Tool for Remote Tool Integration. In: Halbwachs, N., Zuck, L. D. (eds.) TACAS 2005. LNCS, vol. 3440, pp. 557-562. Springer, Heidelberg (2005), http://www. springerlink. com/content/h9x6m1x21g5lknkx.
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Agile IT: Thinking in User-Centric Models
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Margaria, T., Steffen, B. (eds.),,. Springer, Heidelberg
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Margaria, T., Steffen, B.: Agile IT: Thinking in User-Centric Models. In: Margaria, T., Steffen, B. (eds.) ISoLA 2008. CCIS, vol. 17, pp. 490-502. Springer, Heidelberg (2009).
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Service-Orientation: Conquering Complexity with XMDD
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Hinchey, M., Coyle, L. (eds.),. Springer, London
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Margaria, T., Steffen, B.: Service-Orientation: Conquering Complexity with XMDD. In: Hinchey, M., Coyle, L. (eds.) Conquering Complexity, pp. 217-236. Springer, London (2012), http://dx. doi. org/10. 1007/978-1-4471-2297-5_10.
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Loose Programming with PROPHETS
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de Lara, J., Zisman, A. (eds.),,. Springer, Heidelberg
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Naujokat, S., Lamprecht, A.-L., Steffen, B.: Loose Programming with PROPHETS. In: de Lara, J., Zisman, A. (eds.) FASE 2012. LNCS, vol. 7212, pp. 94-98. Springer, Heidelberg (2012).
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Simplicity-First Model-Based Plug-In Development
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Software: Practice and Experience. John Wiley & Sons, Garbervetsky, D., Kim, S. (eds.), Ltd. (to appear)
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Naujokat, S., Neubauer, J., Lamprecht, A. L., Steffen, B., Jörges, S., Margaria, T.: Simplicity-First Model-Based Plug-In Development. In: Garbervetsky, D., Kim, S. (eds.) Special Issue of the 2nd International Workshop on Developing Tools as Plug-ins. Software: Practice and Experience. John Wiley & Sons, Ltd. (to appear).
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Pohl, K., Böckle, G., van der Linden, F. J.: Software Product Line Engineering: Foundations, Principles and Techniques. Springer-Verlag New York, Inc., Secaucus (2005).
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Model-Driven Development with the jABC
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Bin, E., Ziv, A., Ur, S. (eds.),,. Springer, Heidelberg
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Steffen, B., Margaria, T., Nagel, R., Jörges, S., Kubczak, C.: Model-Driven Development with the jABC. In: Bin, E., Ziv, A., Ur, S. (eds.) HVC 2006. LNCS, vol. 4383, pp. 92-108. Springer, Heidelberg (2007), http://dx. doi. org/10. 1007/978-3-540-70889-6_7.
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Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services
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Wassink, I., van der Vet, P. E., Wolstencroft, K., Neerincx, P. B., Roos, M., Rauwerda, H., Breit, T. M.: Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services. In: IEEE Congress on Services, pp. 314-321 (2009).
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