-
1
-
-
77749330016
-
PAMBD, a multilocus sequence typing and analysis database and website for plantassociated and plant-pathogenic microorganisms
-
Almeida, N. F., Yan, S., Cai, R., Clarke, C. P., Morris, C. E., Schaad, N. W., Lacy, G. H., Jones, J.B., Castillo, J. A., Bull, C. T., Leman, S., Guttman, D. S., Setubal, J. C., and Vinatzer, B. A. 2010. PAMBD, a multilocus sequence typing and analysis database and website for plantassociated and plant-pathogenic microorganisms. Phytopathology 100: 208-215.
-
(2010)
Phytopathology
, vol.100
, pp. 208-215
-
-
Almeida, N.F.1
Yan, S.2
Cai, R.3
Clarke, C.P.4
Morris, C.E.5
Schaad, N.W.6
Lacy, G.H.7
Jones, J.B.8
Castillo, J.A.9
Bull, C.T.10
Leman, S.11
Guttman, D.S.12
Setubal, J.C.13
Vinatzer, B.A.14
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
84861889976
-
A genomic approach to bacterial taxonomy: An examination and proposed reclassification of species within the genus Neisseria
-
Bennett, J. S., Jolley, K. A., Earle, S. G., Corton, C., Bentley, S. D., Parkhill, J., and Maiden, M. C. 2012. A genomic approach to bacterial taxonomy: An examination and proposed reclassification of species within the genus Neisseria. Microbiology 158:1570-1580.
-
(2012)
Microbiology
, vol.158
, pp. 1570-1580
-
-
Bennett, J.S.1
Jolley, K.A.2
Earle, S.G.3
Corton, C.4
Bentley, S.D.5
Parkhill, J.6
Maiden, M.C.7
-
4
-
-
79960028477
-
Multilocus sequence typing of Pseudomonas syringae sensu latu confirms previously described genomospecies and permits rapid identification of P. Syringae pv. Coriandricola and P. Spv. Apii causing bacterial leaf spot on parsley
-
Bull, C. T., Clarke, C. R., Cai, R., Vinatzer, B. A., Jardini, M. T., and Koike, S. T. 2011. Multilocus sequence typing of Pseudomonas syringae sensu latu confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley. Phytopathology 101:847-858.
-
(2011)
Phytopathology
, vol.101
, pp. 847-858
-
-
Bull, C.T.1
Clarke, C.R.2
Cai, R.3
Vinatzer, B.A.4
Jardini, M.T.5
Koike, S.T.6
-
5
-
-
79955133206
-
Comprehensive list of names of plant pathogenic bacteria, 1980-2007
-
Bull, C. T., De Boer, S. H., Denny, T. P., Firrao, G., Fischer-Le Saux, M., Saddler, G. S., Scortichini, M., Stead, D. E., and Takikawa, Y. 2010. Comprehensive list of names of plant pathogenic bacteria, 1980-2007. J. Plant Pathol. 92:551-592.
-
(2010)
J. Plant Pathol.
, vol.92
, pp. 551-592
-
-
Bull, C.T.1
De Boer, S.H.2
Denny, T.P.3
Firrao, G.4
Fischer-Le Saux, M.5
Saddler, G.S.6
Scortichini, M.7
Stead, D.E.8
Takikawa, Y.9
-
6
-
-
84888010859
-
List of new names of plant pathogenic bacteria (2008-2010)
-
Bull, C. T., De Boer, S. H., Denny, T. P., Firrao, G., Fischer-Le Saux, M., Saddler, G. S., Scortichini, M., Stead, D. E., and Takikawa, Y. 2012. List of new names of plant pathogenic bacteria (2008-2010). J. Plant Pathol. 94:21-27.
-
(2012)
J. Plant Pathol.
, vol.94
, pp. 21-27
-
-
Bull, C.T.1
De Boer, S.H.2
Denny, T.P.3
Firrao, G.4
Fischer-Le Saux, M.5
Saddler, G.S.6
Scortichini, M.7
Stead, D.E.8
Takikawa, Y.9
-
7
-
-
84910681862
-
Bacterial cankers caused by Pseudomonas syringae on stone fruit species with special emphasis on the pathovars syringae and morsprunorum race 1 and 2
-
Bultreys, A., and Kaluzna, M. 2010. Bacterial cankers caused by Pseudomonas syringae on stone fruit species with special emphasis on the pathovars syringae and morsprunorum race 1 and 2. J. Plant Pathol. 91:S121-S133
-
(2010)
J. Plant Pathol.
, vol.91
, pp. S121-S133
-
-
Bultreys, A.1
Kaluzna, M.2
-
8
-
-
84874517965
-
Pseudomonas syringae pv
-
Butler, M. I., Stockwell, P. A., Black, M. A., Day, R. C., Lamont, I. L., and Poulter, R. T. M. 2012. Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PLoS One 8:e57464.
-
(2012)
Actinidiae from Recent Outbreaks of Kiwifruit Bacterial Canker Belong to Different Clones That Originated in China. PLoS One
, vol.8
, pp. e57464
-
-
Butler, M.I.1
Stockwell, P.A.2
Black, M.A.3
Day, R.C.4
Lamont, I.L.5
Poulter, R.T.M.6
-
9
-
-
81155162492
-
Reconstructing host range evolution of bacterial plant pathogens using Pseudomonas syringae pv. Tomato and its close relatives as a model
-
Cai, R., Yan, S., Liu, H., Leman, S., and Vinatzer, B. A. 2011. Reconstructing host range evolution of bacterial plant pathogens using Pseudomonas syringae pv. tomato and its close relatives as a model. Inf. Gen. Evol. 11:1738-1751.
-
(2011)
Inf. Gen. Evol.
, vol.11
, pp. 1738-1751
-
-
Cai, R.1
Yan, S.2
Liu, H.3
Leman, S.4
Vinatzer, B.A.5
-
10
-
-
84872836707
-
Defining the bacterial species in the genomic era: Insights from the genus Acinetobacter
-
Chan, J. Z.-M., Halachev, M. R., Loman, N. J., Constantinidou, C., and Pallen, M. J. 2012. Defining the bacterial species in the genomic era: Insights from the genus Acinetobacter. BMC Microbiol. 12:302.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 302
-
-
Chan, J.Z.-M.1
Halachev, M.R.2
Loman, N.J.3
Constantinidou, C.4
Pallen, M.J.5
-
11
-
-
15944379273
-
Towards a prokaryotic genomic taxonomy
-
Coenye, T., Gevers, D., Van de Peer, Y., Vandamme, P., and Swings, J. 2005. Towards a prokaryotic genomic taxonomy. FEMS Microbiol. Rev. 29:147-167.
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 147-167
-
-
Coenye, T.1
Gevers, D.2
Van De Peer, Y.3
Vandamme, P.4
Swings, J.5
-
12
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher, A. L., Bratke, K. A., Powers, E. C., and Salzberg, S. L. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
13
-
-
0001467781
-
Gram-negative aerobic rods and cocci. Genus I. Pseudomonas
-
Williams and Wilkins, Baltimore
-
Doudoroff, M., and Palleroni, N. 1974. Gram-negative aerobic rods and cocci. Genus I. Pseudomonas. Pages 217-243 in: Bergey's Manual of Determinative Bacteriology. Williams and Wilkins, Baltimore.
-
(1974)
Bergey's Manual of Determinative Bacteriology
, pp. 217-243
-
-
Doudoroff, M.1
Palleroni, N.2
-
14
-
-
0000296003
-
International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names with standard in nomenclature
-
Dye, D. W., Bradbury, J. F., Goto, M., Hayward, R.A., Lelliott, R. A., and Schroth, M. N. 1980. International standards for naming pathovars of phytopathogenic bacteria and a list of pathovar names with standard in nomenclature. Rev. Plant Pathol. 59:153-168.
-
(1980)
Rev. Plant Pathol.
, vol.59
, pp. 153-168
-
-
Dye, D.W.1
Bradbury, J.F.2
Goto, M.3
Hayward, R.A.4
Lelliott, R.A.5
Schroth, M.N.6
-
15
-
-
84910624021
-
-
National Library of Medicine (US), National Centre for Biotechnology Information, Bethesda, MD
-
Federhen, S. 2003. The taxonomy project. Chapter 4 in: The NCBI Handbook, National Library of Medicine (US), National Centre for Biotechnology Information, Bethesda, MD.
-
(2003)
The Taxonomy Project. Chapter 4 In: The NCBI Handbook
-
-
Federhen, S.1
-
16
-
-
0032900419
-
DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. Nov. And Pseudomonas cannabina sp. Nov. (ex Sutic and Dowson, 1959)
-
Gardan, L., Shafik, H., Belouin, S., Broch, R., Grimont, F., and Grimont, P. A. D. 1999. DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson, 1959). Int. J. Syst. Bacteriol. 49:469-478.
-
(1999)
Int. J. Syst. Bacteriol.
, vol.49
, pp. 469-478
-
-
Gardan, L.1
Shafik, H.2
Belouin, S.3
Broch, R.4
Grimont, F.5
Grimont, P.A.D.6
-
17
-
-
23944437942
-
Re-evaluating prokaryotic species
-
Gevers, D., Cohan, F. M., Lawrence, J. G., Spratt, B. G., Coenye, T., Feil, E. J., Stackebrandt, E., Van de Peer, Y., Vandamme, P., Thompson, E. L., and Swings, J. 2005. Re-evaluating prokaryotic species. Nat. Rev. Microbiol. 3:733-739.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 733-739
-
-
Gevers, D.1
Cohan, F.M.2
Lawrence, J.G.3
Spratt, B.G.4
Coenye, T.5
Feil, E.J.6
Stackebrandt, E.7
Van De Peer, Y.8
Vandamme, P.9
Thompson, E.L.10
Swings, J.11
-
18
-
-
67349150734
-
Genetic analyses of Pseudomonas syringae isolated from Belgian fruit orchards reveal genetic variability and isolate-host relationships within the pathovar syringae, and help identify both races of the pathovar mosrprunorum
-
Gilbert, V., Legros, F., Maraite, H., and Bultreys, A. 2009. Genetic analyses of Pseudomonas syringae isolated from Belgian fruit orchards reveal genetic variability and isolate-host relationships within the pathovar syringae, and help identify both races of the pathovar mosrprunorum. Eur. J. Plant Pathol. 124:199-218.
-
(2009)
Eur. J. Plant Pathol.
, vol.124
, pp. 199-218
-
-
Gilbert, V.1
Legros, F.2
Maraite, H.3
Bultreys, A.4
-
19
-
-
23944467456
-
Which species concept for pathogenic bacteria? An e-debate
-
Godreuil, S., Cohan, F., Shah, H., andTibayrenc, M. 2005. Which species concept for pathogenic bacteria? An e-debate. Infect. Gen. Evol. 5:375-387.
-
(2005)
Infect. Gen. Evol.
, vol.5
, pp. 375-387
-
-
Godreuil, S.1
Cohan, F.2
Shah, H.3
Andtibayrenc, M.4
-
20
-
-
33846555715
-
DNA-DNA hybridization values and their relationships to whole-genome sequence similarities
-
Goris, J., Konstantinidis, K. T., Klappenbach, J. A., Coenye, T., Vandamme, P., and Tiedjie, J. M. 2007. DNA-DNA hybridization values and their relationships to whole-genome sequence similarities. Int. J. Syst. Evol. Microbiol. 57:81-91.
-
(2007)
Int. J. Syst. Evol. Microbiol.
, vol.57
, pp. 81-91
-
-
Goris, J.1
Konstantinidis, K.T.2
Klappenbach, J.A.3
Coenye, T.4
Vandamme, P.5
Tiedjie, J.M.6
-
21
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate phylogenies by maximum likelihood
-
Guindon, S., and Gascuel, O. 2003. A simple, fast, and accurate algorithm to estimate phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
22
-
-
34247352001
-
Plant pathogenic Pseudomonas species
-
Höfte, M., and De Vos, P. 2007. Plant pathogenic Pseudomonas species. Pages 507-533 in: Plant-Associated Bacteria. Springer, Dordrecht, the Netherlands.
-
(2007)
Plant-Associated Bacteria. Springer, Dordrecht, the Netherlands
, pp. 507-533
-
-
Höfte, M.1
De Vos, P.2
-
23
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson, D. H., and Bryant, D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
24
-
-
31544477713
-
The hrpZ and hrpA genes are variable, and useful for grouping Pseudomonas syringae bacteria
-
Inoue, Y., and Takikawa, Y. 2006. The hrpZ and hrpA genes are variable, and useful for grouping Pseudomonas syringae bacteria. J. Gen. Plant Pathol. 72:26-33.
-
(2006)
J. Gen. Plant Pathol.
, vol.72
, pp. 26-33
-
-
Inoue, Y.1
Takikawa, Y.2
-
25
-
-
79955164137
-
Characterization and genetic diversity of Pseudomonas syringae from stone fruits and hazelnut using repetitive-PCR and MLST
-
Kaluzna, M., Ferrante P., Sobiczewski, P., and Scortichini, M. 2010. Characterization and genetic diversity of Pseudomonas syringae from stone fruits and hazelnut using repetitive-PCR and MLST. J. Plant Pathol. 92:781-787.
-
(2010)
J. Plant Pathol.
, vol.92
, pp. 781-787
-
-
Kaluzna, M.1
Ferrante, P.2
Sobiczewski, P.3
Scortichini, M.4
-
26
-
-
40649125049
-
Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
-
Koeppel, A., Perry, E. B., Sikorski, J., Krizanc, D., Warner, A., Ward, D. M., Rooney, A. P., Brambilla, E., Connor, N., Ratcliff, R. M., Nevo, E., and Cohan, F. M. 2008. Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics. Proc. Natl. Acad. Sci. USA 105:2504-2509.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 2504-2509
-
-
Koeppel, A.1
Perry, E.B.2
Sikorski, J.3
Krizanc, D.4
Warner, A.5
Ward, D.M.6
Rooney, A.P.7
Brambilla, E.8
Connor, N.9
Ratcliff, R.M.10
Nevo, E.11
Cohan, F.M.12
-
27
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis, K. T., and Tiedje, J. M. 2005. Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. USA 102:2567-2572.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
28
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S., Phylippi, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., and Salzberg, S. L. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12.
-
(2004)
Genome Biol.
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phylippi, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
29
-
-
0004320741
-
-
American Society for Microbiology Press, Washington, DC
-
Lapage, S. P., Sneath, P. H. A., Lessel, E. F., Skerman, V. B. D., Seeliger, H. P. R., and Clark, V. A. 1992. International code of nomenclature of bacteria: Bacteriological code, 1990 revision. American Society for Microbiology Press, Washington, DC.
-
(1992)
International Code of Nomenclature of Bacteria: Bacteriological Code, 1990 Revision
-
-
Lapage, S.P.1
Sneath, P.H.A.2
Lessel, E.F.3
Skerman, V.B.D.4
Seeliger, H.P.R.5
Clark, V.A.6
-
30
-
-
0000779572
-
Pseudomonas morsprunorum, the cause of bacterial canker of sour cherry in Michigan, and its epiphytic association with Pseudomonas syringae
-
Latorre, B. A., and Jones, A. L. 1979. Pseudomonas morsprunorum, the cause of bacterial canker of sour cherry in Michigan, and its epiphytic association with Pseudomonas syringae. Phytopathology 69:335-339.
-
(1979)
Phytopathology
, vol.69
, pp. 335-339
-
-
Latorre, B.A.1
Jones, A.L.2
-
31
-
-
84875394651
-
Genetic diversity among Pseudomonas syringae pv. Morsprunorum isolates from Prunus mume in Korea and Japan by comparative sequence analysis of 16S rRNA gene
-
Lee, Y. S., Koh, H. S., Sohn, S. H., Koh, Y. J., and Jung, J. S. 2012. Genetic diversity among Pseudomonas syringae pv. morsprunorum isolates from Prunus mume in Korea and Japan by comparative sequence analysis of 16S rRNA gene. Plant Pathol. J. 28:295-298.
-
(2012)
Plant Pathol. J.
, vol.28
, pp. 295-298
-
-
Lee, Y.S.1
Koh, H.S.2
Sohn, S.H.3
Koh, Y.J.4
Jung, J.S.5
-
32
-
-
0027493142
-
DNA sequence variation and phylogenetic relationships among strains of Pseudomonas syringae pv. Syringae inferred from restriction site maps and restriction fragment length polymorphism
-
Legard, D. E., Aquadro, C. F., and Hunter, J. E. 1993. DNA sequence variation and phylogenetic relationships among strains of Pseudomonas syringae pv. syringae inferred from restriction site maps and restriction fragment length polymorphism. Appl. Environ. Microbiol. 59:4180-4188.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 4180-4188
-
-
Legard, D.E.1
Aquadro, C.F.2
Hunter, J.E.3
-
33
-
-
84859268600
-
Pseudomonas syringae type III effector repertoires: Last words in endless arguments
-
Lindeberg, M., Cunnac, S., and Collmer, A. 2012. Pseudomonas syringae type III effector repertoires: Last words in endless arguments. Trends Microbiol. 20:199-208.
-
(2012)
Trends Microbiol.
, vol.20
, pp. 199-208
-
-
Lindeberg, M.1
Cunnac, S.2
Collmer, A.3
-
34
-
-
79951524953
-
Further molecular characterization of Pseudomonas syringae pv. Coryli
-
Loreti, S., Gervasi, F., Gallelli, A., and Scortichini, M. 2008. Further molecular characterization of Pseudomonas syringae pv. coryli. J. Plant Pathol. 90:57-64.
-
(2008)
J. Plant Pathol.
, vol.90
, pp. 57-64
-
-
Loreti, S.1
Gervasi, F.2
Gallelli, A.3
Scortichini, M.4
-
35
-
-
27544446428
-
Pathovars of Pseudomonas syringae are structured in genetic populations allowing the selection of specific markers for their detection in plant samples
-
Kluwer Academic Publishers, Dordrecht, the Netherlands
-
Manceau, C., and Brin, C. 2003. Pathovars of Pseudomonas syringae are structured in genetic populations allowing the selection of specific markers for their detection in plant samples. Pages 503-512 in: Pseudomonas syringae Pathovars and Related Pathogens. Kluwer Academic Publishers, Dordrecht, the Netherlands.
-
(2003)
Pseudomonas Syringae Pathovars and Related Pathogens
, pp. 503-512
-
-
Manceau, C.1
Brin, C.2
-
36
-
-
81755184030
-
Pseudomonas syringae pv. Actinidiae draft genomes comparison reveals strain-specific features involved in adaptation and virulence to Actinidia species
-
Marcelletti, S., Ferrante, P., Petriccione, M., Firrao, G., and Scortichini, M. 2011. Pseudomonas syringae pv. actinidiae draft genomes comparison reveals strain-specific features involved in adaptation and virulence to Actinidia species. PLoS One 6:e27297.
-
(2011)
PLoS One
, vol.6
, pp. e27297
-
-
Marcelletti, S.1
Ferrante, P.2
Petriccione, M.3
Firrao, G.4
Scortichini, M.5
-
37
-
-
84884758493
-
Genomic analysis of the kiwifruit pathogen Pseudomonas syringae pv. Actinidiae provides insights into the origins of an emergent plant disease
-
McCann, H., Rikkerink, E. H. A., Bertels, F., Fiers, M., Ashley, L., Rees-George, J., Andersen, M. T., Gleave, A. P., Haubold, B., Wohlers, M. W., Guttman, D. S., Wang, P. W., Straub, C., Vanneste, J., Rainey, P. B., and Templeton, M. D. 2013. Genomic analysis of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insights into the origins of an emergent plant disease. Plos Pathogens 9:e1003503.
-
(2013)
Plos Pathogens
, vol.9
, pp. e1003503
-
-
McCann, H.1
Rikkerink, E.H.A.2
Bertels, F.3
Fiers, M.4
Ashley, L.5
Rees-George, J.6
Andersen, M.T.7
Gleave, A.P.8
Haubold, B.9
Wohlers, M.W.10
Guttman, D.S.11
Wang, P.W.12
Straub, C.13
Vanneste, J.14
Rainey, P.B.15
Templeton, M.D.16
-
38
-
-
55449109855
-
Nonmedical Pseudomonas
-
Proteobacteria: Gamma subclass. Springer, New York
-
Moore, E. R. B., Tindall, B. J., Martins Dos Santos, V. A. P., Pieper, D. H., Ramos, J.-L., and Palleroni, N. J. 2006. Nonmedical Pseudomonas. Pages 21-28 in: The Prokaryotes, vol. 6, Proteobacteria: Gamma subclass. Springer, New York.
-
(2006)
The Prokaryotes
, vol.6
, pp. 21-28
-
-
Moore, E.R.B.1
Tindall, B.J.2
Martins Dos Santos, V.A.P.3
Pieper, D.H.4
Ramos, J.-L.5
Palleroni, N.J.6
-
39
-
-
34248340405
-
Genetic diversity of Pseudomonas syringae pv. Lachrymans strains isolated from cucumber leaves collected in Poland
-
Olczak-Waltman, H., Masny, A., Bartosewski, G., Plucienniczak, A., and Niemirowicz-Szcztt, K. 2007. Genetic diversity of Pseudomonas syringae pv. lachrymans strains isolated from cucumber leaves collected in Poland. Plant Pathol. 56:373-382.
-
(2007)
Plant Pathol.
, vol.56
, pp. 373-382
-
-
Olczak-Waltman, H.1
Masny, A.2
Bartosewski, G.3
Plucienniczak, A.4
Niemirowicz-Szcztt, K.5
-
40
-
-
1042304216
-
APE: Analysis of phylogenetic and evolution in R language
-
Paradis, E., Claude, J., and Strimmer, K. 2004. APE: Analysis of phylogenetic and evolution in R language. Bioinformatics 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
41
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M., and Rosselló-Móra, R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. USA 106:19126-19131.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
42
-
-
84856571925
-
Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories
-
Rosselló-Móra, R. 2012. Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories. Environ. Microbiol. 14:318-334.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 318-334
-
-
Rosselló-Móra, R.1
-
43
-
-
1642319596
-
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen
-
Sarkar, S. F., and Guttman, D. S. 2004. Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl. Environ. Microbiol. 70:1999-2012.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1999-2012
-
-
Sarkar, S.F.1
Guttman, D.S.2
-
44
-
-
0033278645
-
Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster
-
Sawada, H., Suzuki, F., Matsuda, I., and Saitou, N. 1999. Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. J. Mol. Evol. 49:627-644.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 627-644
-
-
Sawada, H.1
Suzuki, F.2
Matsuda, I.3
Saitou, N.4
-
45
-
-
70449701463
-
Classification of Bacteria and Archaea: Past, present and future
-
Schleifer, K.-H. 2009. Classification of Bacteria and Archaea: Past, present and future. Syst. Appl. Microbiol. 32:533-542.
-
(2009)
Syst. Appl. Microbiol.
, vol.32
, pp. 533-542
-
-
Schleifer, K.-H.1
-
46
-
-
84884555902
-
A genomic redefinition of Pseudomonas avellanae species
-
Scortichini, M., Marcelletti, S., Ferrante, P., and Firrao, G. 2013. A genomic redefinition of Pseudomonas avellanae species. PLoS One 8:e75794.
-
(2013)
PLoS One
, vol.8
, pp. e75794
-
-
Scortichini, M.1
Marcelletti, S.2
Ferrante, P.3
Firrao, G.4
-
47
-
-
0038338576
-
Genetic diversity, presence of syrB gene, Host preference and virulence of Pseudomonas syringae pv. Syringae strains from woody and herbaceous host plants
-
Scortichini, M., Marchesi, U., Dettori, M. T., and Rossi, M. P. 2003. Genetic diversity, presence of syrB gene, host preference and virulence of Pseudomonas syringae pv. syringae strains from woody and herbaceous host plants. Plant Pathol. 52:277-286.
-
(2003)
Plant Pathol.
, vol.52
, pp. 277-286
-
-
Scortichini, M.1
Marchesi, U.2
Dettori, M.T.3
Rossi, M.P.4
-
48
-
-
0032766857
-
Multiple comparisons of loglikelihoods with applications to phylogenetic inference
-
Shimodaira, H., and Hasegawa, M. 1999. Multiple comparisons of loglikelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
49
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira, H., and Hasegawa, M. 2001. CONSEL: For assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
50
-
-
0018839477
-
Approved lists of bacterial species
-
Skerman, V. B. D., McGowan, V., and Sneath, P. H. A. 1980. Approved lists of bacterial species. Int. J. Syst. Bacteriol. 3:255-420.
-
(1980)
Int. J. Syst. Bacteriol.
, vol.3
, pp. 255-420
-
-
Skerman, V.B.D.1
McGowan, V.2
Sneath, P.H.A.3
-
51
-
-
33751258603
-
The bacterial species dilemma and the genomicphylogenetic species concept
-
Staley, J. T. 2006. The bacterial species dilemma and the genomicphylogenetic species concept. Phil. Trans. R. Soc. B 361:1899-1909.
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1899-1909
-
-
Staley, J.T.1
-
52
-
-
70349874788
-
The phylogenomic species concept for Bacteria and Archaea
-
Staley, J. T. 2009. The phylogenomic species concept for Bacteria and Archaea. ASM Microbe Magazine 4:362-365.
-
(2009)
ASM Microbe Magazine
, vol.4
, pp. 362-365
-
-
Staley, J.T.1
-
53
-
-
0000444679
-
Problems in speciation in phytopathogenic pseudomonads and xanthomonads
-
Stolp, H., Starr, M. P., and Baignet, N. L. 1965. Problems in speciation in phytopathogenic pseudomonads and xanthomonads. Annu. Rev. Phytopathol. 3:231-264.
-
(1965)
Annu. Rev. Phytopathol.
, vol.3
, pp. 231-264
-
-
Stolp, H.1
Starr, M.P.2
Baignet, N.L.3
-
54
-
-
76849088617
-
Notes on the characterization of prokaryote strains for taxonomic purposes
-
Tindall, B. J., Rosselló-Móra, R., Busse, H.-J., Ludwig, W., and Kampfer, P. 2010. Notes on the characterization of prokaryote strains for taxonomic purposes. Int. J. Syst. Evol. Microbiol. 60:249-266.
-
(2010)
Int. J. Syst. Evol. Microbiol.
, vol.60
, pp. 249-266
-
-
Tindall, B.J.1
Rosselló-Móra, R.2
Busse, H.-J.3
Ludwig, W.4
Kampfer, P.5
-
55
-
-
1842810862
-
Identification and discrimination of Pseudomonas syringae isolates from wild cherry in England
-
Vicente, J. G., Roberts, S. J., Russell, K., and Alves, J. P. 2004. Identification and discrimination of Pseudomonas syringae isolates from wild cherry in England. Eur. J. Plant Pathol. 110:337-351.
-
(2004)
Eur. J. Plant Pathol.
, vol.110
, pp. 337-351
-
-
Vicente, J.G.1
Roberts, S.J.2
Russell, K.3
Alves, J.P.4
-
56
-
-
34249048120
-
Convergent evolution of phytopathogenic pseudomonads onto hazelnut
-
Wang, P. W., Morgan, R. L., Scortichini, M., and Guttman, D. 2007. Convergent evolution of phytopathogenic pseudomonads onto hazelnut. Microbiology 153:2067-2073.
-
(2007)
Microbiology
, vol.153
, pp. 2067-2073
-
-
Wang, P.W.1
Morgan, R.L.2
Scortichini, M.3
Guttman, D.4
-
57
-
-
38549155995
-
Genomics, environmental genomics and the issue of microbial species
-
Ward, D. M., Cohan, F. M., Bhaya, D., Heidelberg, J. F., Kuhl, M., and Grossman, A. 2008. Genomics, environmental genomics and the issue of microbial species. Heredity 100:207-219.
-
(2008)
Heredity
, vol.100
, pp. 207-219
-
-
Ward, D.M.1
Cohan, F.M.2
Bhaya, D.3
Heidelberg, J.F.4
Kuhl, M.5
Grossman, A.6
-
58
-
-
0000770675
-
International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E., Stackebrandt, E., Starr, M. P., and Truper, H. G. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37:463-464.
-
(1987)
Int. J. Syst. Bacteriol.
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
Stackebrandt, E.10
Starr, M.P.11
Truper, H.G.12
-
59
-
-
78649772089
-
Taxonomy of Pseudomonas syringae
-
Young, J. M. 2010. Taxonomy of Pseudomonas syringae. J. Plant Pathol. 92:S1.5-S1.14.
-
(2010)
J. Plant Pathol.
, vol.92
, pp. S15-S114
-
-
Young, J.M.1
-
60
-
-
0002913526
-
Nomenclatural revision of plant pathogenic bacteria and a list of names 1980-1988
-
Young, J. M., Bradbury, J. F., Davis, R. E., Dickey, R. S., Ercolani, G. L., Hayward, A. C., and Vidaver, A. K. 1991. Nomenclatural revision of plant pathogenic bacteria and a list of names 1980-1988. Rev. Plant Pathol. 70:211-221.
-
(1991)
Rev. Plant Pathol.
, vol.70
, pp. 211-221
-
-
Young, J.M.1
Bradbury, J.F.2
Davis, R.E.3
Dickey, R.S.4
Ercolani, G.L.5
Hayward, A.C.6
Vidaver, A.K.7
|