-
1
-
-
84872515273
-
Whole-genome sequencing for analysis of an outbreak of meticillinresistant Staphylococcus aureus: A descriptive study
-
Harris SR, Cartwright EJ, Török ME, Holden MT, Brown NM, Ogilvy-Stuart AL, Ellington MJ, Quail MA, Bentley SD, Parkhill J, Peacock SJ. 2013. Whole-genome sequencing for analysis of an outbreak of meticillinresistant Staphylococcus aureus: a descriptive study. Lancet Infect. Dis. 13:130-136. http://dx.doi.org/10.1016/S1473-3099(12)70268-2.
-
(2013)
Lancet Infect. Dis
, vol.13
, pp. 130-136
-
-
Harris, S.R.1
Cartwright, E.J.2
Török, M.E.3
Holden, M.T.4
Brown, N.M.5
Ogilvy-Stuart, A.L.6
Ellington, M.J.7
Quail, M.A.8
Bentley, S.D.9
Parkhill, J.10
Peacock, S.J.11
-
2
-
-
84872513471
-
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: A retrospective observational study
-
Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE. 2013. Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study. Lancet Infect. Dis. 13:137-146. http://dx.doi.org/10.1016/S1473-3099(12)70277-3.
-
(2013)
Lancet Infect. Dis
, vol.13
, pp. 137-146
-
-
Walker, T.M.1
Ip, C.L.2
Harrell, R.H.3
Evans, J.T.4
Kapatai, G.5
Dedicoat, M.J.6
Eyre, D.W.7
Wilson, D.J.8
Hawkey, P.M.9
Crook, D.W.10
Parkhill, J.11
Harris, D.12
Walker, A.S.13
Bowden, R.14
Monk, P.15
Smith, E.G.16
Peto, T.E.17
-
3
-
-
80052150179
-
Origins of the e coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK. 2011. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N. Engl. J. Med. 365:709-717. http://dx.doi.org/10.1056/NEJMoa1106920.
-
(2011)
N. Engl. J. Med
, vol.365
, pp. 709-717
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
Bashir, A.4
Boisen, N.5
Scheutz, F.6
Paxinos, E.E.7
Sebra, R.8
Chin, C.S.9
Iliopoulos, D.10
Klammer, A.11
Peluso, P.12
Lee, L.13
Kislyuk, A.O.14
Bullard, J.15
Kasarskis, A.16
Wang, S.17
Eid, J.18
Rank, D.19
Redman, J.C.20
Steyert, S.R.21
Frimodt-Møller, J.22
Struve, C.23
Petersen, A.M.24
Krogfelt, K.A.25
Nataro, J.P.26
Schadt, E.E.27
Waldor, M.K.28
more..
-
4
-
-
84875870499
-
A genomic day in the life of a clinical microbiology laboratory
-
Long SW, Williams D, Valson C, Cantu CC, Cernoch P, Musser JM, Olsen RJ. 2013. A genomic day in the life of a clinical microbiology laboratory. J. Clin. Microbiol. 51:1272-1277. http://dx.doi.org/10.1128/JCM.03237-12.
-
(2013)
J. Clin. Microbiol
, vol.51
, pp. 1272-1277
-
-
Long, S.W.1
Williams, D.2
Valson, C.3
Cantu, C.C.4
Cernoch, P.5
Musser, J.M.6
Olsen, R.J.7
-
5
-
-
82555189324
-
Rapidly progressive, fatal, inhalation anthrax-like infection in a human: Case report, pathogen genome sequencing, pathology, and coordinated response
-
Wright AM, Beres SB, Consamus EN, Long SW, Flores AR, Barrios R, Richter GS, Oh SY, Garufi G, Maier H, Drews AL, Stockbauer KE, Cernoch P, Schneewind O, Olsen RJ, Musser JM. 2011. Rapidly progressive, fatal, inhalation anthrax-like infection in a human: case report, pathogen genome sequencing, pathology, and coordinated response. Arch. Pathol. Lab. Med. 135:1447-1459. http://dx.doi.org/10.5858/2011-0362-SAIR.1.
-
(2011)
Arch. Pathol. Lab. Med
, vol.135
, pp. 1447-1459
-
-
Wright, A.M.1
Beres, S.B.2
Consamus, E.N.3
Long, S.W.4
Flores, A.R.5
Barrios, R.6
Richter, G.S.7
Oh, S.Y.8
Garufi, G.9
Maier, H.10
Drews, A.L.11
Stockbauer, K.E.12
Cernoch, P.13
Schneewind, O.14
Olsen, R.J.15
Musser, J.M.16
-
6
-
-
84880432120
-
Wholegenome sequencing for rapid susceptibility testing of M tuberculosis
-
Köser CU, Bryant JM, Becq J, Török ME, Ellington MJ, Marti-Renom MA, Carmichael AJ, Parkhill J, Smith GP, Peacock SJ. 2013. Wholegenome sequencing for rapid susceptibility testing of M. tuberculosis. N. Engl. J. Med. 369:290-292. http://dx.doi.org/10.1056/NEJMc1215305.
-
(2013)
N. Engl. J. Med
, vol.369
, pp. 290-292
-
-
Köser, C.U.1
Bryant, J.M.2
Becq, J.3
Török, M.E.4
Ellington, M.J.5
Marti-Renom, M.A.6
Carmichael, A.J.7
Parkhill, J.8
Smith, G.P.9
Peacock, S.J.10
-
7
-
-
84859830097
-
Epidemic of invasive pneumococcal disease, western Canada, 2005-2009
-
Tyrrell GJ, Lovgren M, Ibrahim Q, Garg S, Chui L, Boone TJ, Mangan C, Patrick DM, Hoang L, Horsman GB, Van Caeseele P, Marrie TJ. 2012. Epidemic of invasive pneumococcal disease, western Canada, 2005-2009. Emerg. Infect. Dis. 18:733-740. http://dx.doi.org/10.3201/eid1805.110235.
-
(2012)
Emerg. Infect. Dis
, vol.18
, pp. 733-740
-
-
Tyrrell, G.J.1
Lovgren, M.2
Ibrahim, Q.3
Garg, S.4
Chui, L.5
Boone, T.J.6
Mangan, C.7
Patrick, D.M.8
Hoang, L.9
Horsman, G.B.10
Van Caeseele, P.11
Marrie, T.J.12
-
8
-
-
70349189311
-
Global emm type distribution of group A streptococci: Systematic review and implications for vaccine development
-
Steer AC, Law I, Matatolu L, Beall BW, Carapetis JR. 2009. Global emm type distribution of group A streptococci: systematic review and implications for vaccine development. Lancet Infect. Dis. 9:611-616. http://dx.doi.org/10.1016/S1473-3099(09)70178-1.
-
(2009)
Lancet Infect. Dis
, vol.9
, pp. 611-616
-
-
Steer, A.C.1
Law, I.2
Matatolu, L.3
Beall, B.W.4
Carapetis, J.R.5
-
9
-
-
84930473759
-
Group a streptococcus emm gene types in pharyngeal isolates, ontario, canada, 2002-2010
-
Shea PR, Ewbank AL, Gonzalez-Lugo JH, Martagon-Rosado AJ, Martinez-Gutierrez JC, Rehman HA, Serrano-Gonzalez M, Fittipaldi N, Beres SB, Flores AR, Low DE, Willey BM, Musser JM. 2011. Group A streptococcus emm gene types in pharyngeal isolates, Ontario, Canada, 2002-2010. Emerg. Infect. Dis. 17:2010-2017. http://dx.doi.org/10.3201/eid1711.110159.
-
(2011)
Emerg. Infect. Dis
, vol.17
, pp. 2010-2017
-
-
Shea, P.R.1
Ewbank, A.L.2
Gonzalez-Lugo, J.H.3
Martagon-Rosado, A.J.4
Martinez-Gutierrez, J.C.5
Rehman, H.A.6
Serrano-Gonzalez, M.7
Fittipaldi, N.8
Beres, S.B.9
Flores, A.R.10
Low, D.E.11
Willey, B.M.12
Musser, J.M.13
-
10
-
-
84858696849
-
Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A streptococcus
-
Fittipaldi N, Beres SB, Olsen RJ, Kapur V, Shea PR, Watkins ME, Cantu CC, Laucirica DR, Jenkins L, Flores AR, Lovgren M, Ardanuy C, Liñares J, Low DE, Tyrrell GJ, Musser JM. 2012. Full-genome dissection of an epidemic of severe invasive disease caused by a hypervirulent, recently emerged clone of group A streptococcus. Am. J. Pathol. 180:1522-1534. http://dx.doi.org/10.1016/j.ajpath.2011.12.037.
-
(2012)
Am. J. Pathol
, vol.180
, pp. 1522-1534
-
-
Fittipaldi, N.1
Beres, S.B.2
Olsen, R.J.3
Kapur, V.4
Shea, P.R.5
Watkins, M.E.6
Cantu, C.C.7
Laucirica, D.R.8
Jenkins, L.9
Flores, A.R.10
Lovgren, M.11
Ardanuy, C.12
Liñares, J.13
Low, D.E.14
Tyrrell, G.J.15
Musser, J.M.16
-
11
-
-
84858673443
-
Genomic analysis of emm59 group a streptococcus invasive strains, united states
-
Fittipaldi N, Olsen RJ, Beres SB, Van Beneden C, Musser JM. 2012. Genomic analysis of emm59 group A streptococcus invasive strains, United States. Emerg. Infect. Dis. 18:650-652. http://dx.doi.org/10.3201/eid1804.111803.
-
(2012)
Emerg. Infect. Dis
, vol.18
, pp. 650-652
-
-
Fittipaldi, N.1
Olsen, R.J.2
Beres, S.B.3
Van Beneden, C.4
Musser, J.M.5
-
12
-
-
84879384151
-
Integrated whole-genome sequencing and temporospatial analysis of a continuing group A streptococcus epidemic
-
Fittipaldi N, Tyrrell GJ, Low DE, Martin I, Lin D, Hari KL, Musser JM. 2013. Integrated whole-genome sequencing and temporospatial analysis of a continuing group A streptococcus epidemic. Emerg. Microbes Infect. 2:e13. http://dx.doi.org/10.1038/emi.2013.13.
-
(2013)
Emerg. Microbes Infect
, vol.2
, pp. e13
-
-
Fittipaldi, N.1
Tyrrell, G.J.2
Low, D.E.3
Martin, I.4
Lin, D.5
Hari, K.L.6
Musser, J.M.7
-
14
-
-
84901675732
-
Deriving groupAstreptococcus typing information from short-read whole-genome sequencing data
-
Athey TB, Teatero S, Li A, Marchand-Austin A, Beall BW, Fittipaldi N. 2014. Deriving groupAstreptococcus typing information from short-read whole-genome sequencing data. J. Clin. Microbiol. 52:1871-1876. http://dx.doi.org/10.1128/JCM.00029-14.
-
(2014)
J. Clin. Microbiol
, vol.52
, pp. 1871-1876
-
-
Athey, T.B.1
Teatero, S.2
Li, A.3
Marchand-Austin, A.4
Beall, B.W.5
Fittipaldi, N.6
-
15
-
-
84899645046
-
Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences
-
Nasser W, Beres SB, Olsen RJ, Dean MA, Rice KA, Long SW, Kristinsson KG, Gottfredsson M, Vuopio J, Raisanen K, Caugant DA, Steinbakk M, Low DE, McGeer A, Darenberg J, Henriques-Normark B, Van Beneden CA, Hoffmann S, Musser JM. 2014. Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences. Proc. Natl. Acad. Sci. U. S. A. 111:E1768-E1776. http://dx.doi.org/10.1073/pnas.1403138111.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A
, vol.111
, pp. E1768-E1776
-
-
Nasser, W.1
Beres, S.B.2
Olsen, R.J.3
Dean, M.A.4
Rice, K.A.5
Long, S.W.6
Kristinsson, K.G.7
Gottfredsson, M.8
Vuopio, J.9
Raisanen, K.10
Caugant, D.A.11
Steinbakk, M.12
Low, D.E.13
McGeer, A.14
Darenberg, J.15
Henriques-Normark, B.16
Van Beneden, C.A.17
Hoffmann, S.18
Musser, J.M.19
-
16
-
-
84896462791
-
Spread of virulent group A Streptococcus type emm59 from Montana to Wyoming, USA
-
Brown CC, Olsen RJ, Fittipaldi N, Mormon ML, Fort PL, Neuwirth R, Majeed M, Woodward WB, Musser JM. 2014. Spread of virulent group A Streptococcus type emm59 from Montana to Wyoming, USA. Emerg. Infect. Dis. 20:658-660. http://dx.doi.org/10.3201/eid2004.130564.
-
(2014)
Emerg. Infect. Dis
, vol.20
, pp. 658-660
-
-
Brown, C.C.1
Olsen, R.J.2
Fittipaldi, N.3
Mormon, M.L.4
Fort, P.L.5
Neuwirth, R.6
Majeed, M.7
Woodward, W.B.8
Musser, J.M.9
-
17
-
-
38649123929
-
Contribution of exogenous genetic elements to the group A Streptococcus metagenome
-
Beres SB, Musser JM. 2007. Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS One 2:e800. http://dx.doi.org/10.1371/journal.pone.0000800.
-
(2007)
PLoS One
, vol.2
, pp. e800
-
-
Beres, S.B.1
Musser, J.M.2
-
18
-
-
84866418984
-
Nucleotides critical for the interaction of the Streptococcus pyogenes Mga virulence regulator with Mga-regulated promoter sequences
-
Hause LL, McIver KS. 2012. Nucleotides critical for the interaction of the Streptococcus pyogenes Mga virulence regulator with Mga-regulated promoter sequences. J. Bacteriol. 194:4904-4919. http://dx.doi.org/10.1128/JB.00809-12.
-
(2012)
J. Bacteriol
, vol.194
, pp. 4904-4919
-
-
Hause, L.L.1
McIver, K.S.2
-
19
-
-
40749113609
-
A chemokine-degrading extracellular protease made by group A streptococcus alters pathogenesis by enhancing evasion of the innate immune response
-
Sumby P, Zhang S, Whitney AR, Falugi F, Grandi G, Graviss EA, Deleo FR, Musser JM. 2008. A chemokine-degrading extracellular protease made by group A streptococcus alters pathogenesis by enhancing evasion of the innate immune response. Infect. Immun. 76:978-985. http://dx.doi.org/10.1128/IAI.01354-07.
-
(2008)
Infect. Immun
, vol.76
, pp. 978-985
-
-
Sumby, P.1
Zhang, S.2
Whitney, A.R.3
Falugi, F.4
Grandi, G.5
Graviss, E.A.6
Deleo, F.R.7
Musser, J.M.8
-
20
-
-
0026048266
-
Hyaluronic acid capsule is a virulence factor for mucoid group A streptococci
-
Wessels MR, Moses AE, Goldberg JB, DiCesare TJ. 1991. Hyaluronic acid capsule is a virulence factor for mucoid group A streptococci. Proc. Natl. Acad. Sci. U. S. A. 88:8317-8321. http://dx.doi.org/10.1073/pnas.88.19.8317.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A
, vol.88
, pp. 8317-8321
-
-
Wessels, M.R.1
Moses, A.E.2
Goldberg, J.B.3
Dicesare, T.J.4
-
21
-
-
31844444627
-
Expression microarray and mouse virulence analysis of four conserved two-component gene regulatory systems in group a streptococcus
-
Sitkiewicz I, Musser JM. 2006. Expression microarray and mouse virulence analysis of four conserved two-component gene regulatory systems in group a streptococcus. Infect. Immun. 74:1339-1351. http://dx.doi.org/10.1128/IAI.74.2.1339-1351.2006.
-
(2006)
Infect. Immun
, vol.74
, pp. 1339-1351
-
-
Sitkiewicz, I.1
Musser, J.M.2
-
22
-
-
78651387047
-
Pandemic swine-origin H1N1 influenza A virus isolates show heterogeneous virulence in macaques
-
Safronetz D, Rockx B, Feldmann F, Belisle SE, Palermo RE, Brining D, Gardner D, Proll SC, Marzi A, Tsuda Y, Lacasse RA, Kercher L, York A, Korth MJ, Long D, Rosenke R, Shupert WL, Aranda CA, Mattoon JS, Kobasa D, Kobinger G, Li Y, Taubenberger JK, Richt JA, Parnell M, Ebihara H, Kawaoka Y, Katze MG, Feldmann H. 2011. Pandemic swine-origin H1N1 influenza A virus isolates show heterogeneous virulence in macaques. J. Virol. 85:1214-1223. http://dx.doi.org/10.1128/JVI.01848-10.
-
(2011)
J. Virol
, vol.85
, pp. 1214-1223
-
-
Safronetz, D.1
Rockx, B.2
Feldmann, F.3
Belisle, S.E.4
Palermo, R.E.5
Brining, D.6
Gardner, D.7
Proll, S.C.8
Marzi, A.9
Tsuda, Y.10
Lacasse, R.A.11
Kercher, L.12
York, A.13
Korth, M.J.14
Long, D.15
Rosenke, R.16
Shupert, W.L.17
Aranda, C.A.18
Mattoon, J.S.19
Kobasa, D.20
Kobinger, G.21
Li, Y.22
Taubenberger, J.K.23
Richt, J.A.24
Parnell, M.25
Ebihara, H.26
Kawaoka, Y.27
Katze, M.G.28
Feldmann, H.29
more..
-
23
-
-
84866182214
-
Bacterial genomics in infectious disease and the clinical pathology laboratory
-
Olsen RJ, Long SW, Musser JM. 2012. Bacterial genomics in infectious disease and the clinical pathology laboratory. Arch. Pathol. Lab. Med. 136:1414-1422. http://dx.doi.org/10.5858/arpa.2012-0025-RA.
-
(2012)
Arch. Pathol. Lab. Med
, vol.136
, pp. 1414-1422
-
-
Olsen, R.J.1
Long, S.W.2
Musser, J.M.3
-
24
-
-
84908431770
-
25 August 2014 PBP2a mutations causing high-level ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates
-
Long SW, Olsen RJ, Mehta SC, Palzkill TG, Cernoch PL, Perez KK, Musick WL, Rosato AE, Musser JM. 25 August 2014. PBP2a mutations causing high-level ceftaroline resistance in clinical methicillin-resistant Staphylococcus aureus isolates. Antimicrob. Agents Chemother. http://dx.doi.org/10.1128/AAC.03622-14.
-
Antimicrob. Agents Chemother
-
-
Long, S.W.1
Olsen, R.J.2
Mehta, S.C.3
Palzkill, T.G.4
Cernoch, P.L.5
Perez, K.K.6
Musick, W.L.7
Rosato, A.E.8
Musser, J.M.9
-
25
-
-
84055214189
-
Genomic anatomy of Escherichia coli O157:H7 outbreaks
-
Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA. 2011. Genomic anatomy of Escherichia coli O157:H7 outbreaks. Proc. Natl. Acad. Sci. U. S. A. 108:20142-20147. http://dx.doi.org/10.1073/pnas.1107176108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 20142-20147
-
-
Eppinger, M.1
Mammel, M.K.2
Leclerc, J.E.3
Ravel, J.4
Cebula, T.A.5
-
26
-
-
84897487143
-
Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae
-
Deleo FR, Chen L, Porcella SF, Martens CA, Kobayashi SD, Porter AR, Chavda KD, Jacobs MR, Mathema B, Olsen RJ, Bonomo RA, Musser JM, Kreiswirth BN. 2014. Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae. Proc. Natl. Acad. Sci. U. S. A. 111:4988-4993. http://dx.doi.org/10.1073/pnas.1321364111.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A
, vol.111
, pp. 4988-4993
-
-
Deleo, F.R.1
Chen, L.2
Porcella, S.F.3
Martens, C.A.4
Kobayashi, S.D.5
Porter, A.R.6
Chavda, K.D.7
Jacobs, M.R.8
Mathema, B.9
Olsen, R.J.10
Bonomo, R.A.11
Musser, J.M.12
Kreiswirth, B.N.13
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