-
1
-
-
84866074972
-
Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
-
Baerenfaller, K., Massonnet, C., Walsh, S., Baginsky, S., Bühlmann, P., Hennig, L., et al. (2012). Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol. Syst. Biol. 8, 606. doi: 10.1038/msb.2012.39.
-
(2012)
Mol. Syst. Biol
, vol.8
, pp. 606
-
-
Baerenfaller, K.1
Massonnet, C.2
Walsh, S.3
Baginsky, S.4
Bühlmann, P.5
Hennig, L.6
-
2
-
-
72949089708
-
Global signatures of protein and mRNA expression levels
-
De Sousa Abreu, R., Penalva, L. O., Marcotte, E. M., and Vogel, C. (2009). Global signatures of protein and mRNA expression levels. Mol. Biosyst. 5, 1512-1526. doi: 10.1039/b908315d.
-
(2009)
Mol. Biosyst
, vol.5
, pp. 1512-1526
-
-
De Sousa Abreu, R.1
Penalva, L.O.2
Marcotte, E.M.3
Vogel, C.4
-
3
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin, S. A., Priest, H. D., Givan, S. A., Shen, R., Bryant, D. W., Fox, S. E., et al. (2010). Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res. 20, 45-58. doi: 10.1101/gr.093302.109.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.4
Bryant, D.W.5
Fox, S.E.6
-
4
-
-
84859999981
-
Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics
-
Hummel, M., Cordewener, J. H., de Groot, J. C., Smeekens, S., America, A. H., and Hanson, J. (2012). Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics. Proteomics 12, 1024-1038. doi: 10.1002/pmic.201100413.
-
(2012)
Proteomics
, vol.12
, pp. 1024-1038
-
-
Hummel, M.1
Cordewener, J.H.2
de Groot, J.C.3
Smeekens, S.4
America, A.H.5
Hanson, J.6
-
5
-
-
84894318608
-
Ribosome profiling: New views of translation, from single codons to genome scale
-
Ingolia, N. T. (2014). Ribosome profiling: new views of translation, from single codons to genome scale. Nat. Rev. Genet. 15, 205-213. doi: 10.1038/nrg3645.
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 205-213
-
-
Ingolia, N.T.1
-
6
-
-
84891945795
-
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis
-
Juntawong, P., Girke, T., Bazin, J., and Bailey-Serres, J. (2014). Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 111, E203-E212. doi: 10.1073/pnas.1317811111.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. E203-E212
-
-
Juntawong, P.1
Girke, T.2
Bazin, J.3
Bailey-Serres, J.4
-
7
-
-
0022270948
-
A drosophila minute gene encodes a ribosomal protein
-
Kongsuwan, K., Yu, Q., Vincent, A., Frisardi, M. C., Rosbash, M., Lengyel, J. A., et al. (1985). A drosophila minute gene encodes a ribosomal protein. Nature 317, 555-558. doi: 10.1038/317555a0.
-
(1985)
Nature
, vol.317
, pp. 555-558
-
-
Kongsuwan, K.1
Yu, Q.2
Vincent, A.3
Frisardi, M.C.4
Rosbash, M.5
Lengyel, J.A.6
-
8
-
-
84875444381
-
Alternative splicing: A pivotal step between eukaryotic transcription and translation
-
Kornblihtt, A. R., Schor, I. E., Alló, M., Dujardin, G., Petrillo, E., and Muñoz, M. J. (2013). Alternative splicing: a pivotal step between eukaryotic transcription and translation. Nat. Rev. Mol. Cell Biol. 14, 153-165. doi: 10.1038/nrm3525.
-
(2013)
Nat. Rev. Mol. Cell Biol
, vol.14
, pp. 153-165
-
-
Kornblihtt, A.R.1
Schor, I.E.2
Alló, M.3
Dujardin, G.4
Petrillo, E.5
Muñoz, M.J.6
-
9
-
-
84890795845
-
Protein synthesis rate is the predominant regulator of protein expression during differentiation
-
Kristensen, A. R., Gsponer, J., and Foster, L. J. (2013). Protein synthesis rate is the predominant regulator of protein expression during differentiation. Mol. Syst. Biol. 9, 689 doi: 10.1038/msb.2013.47.
-
(2013)
Mol. Syst. Biol
, vol.9
, pp. 689
-
-
Kristensen, A.R.1
Gsponer, J.2
Foster, L.J.3
-
10
-
-
84883741725
-
The RNA-binding protein repertoire of embryonic stem cells
-
Kwon, S. C., Yi, H., Eichelbaum, K., Fohr, S., Fischer, B., You, K. T., et al. (2013). The RNA-binding protein repertoire of embryonic stem cells. Nat. Struct. Mol. Biol. 20, 1122-1130. doi: 10.1038/nsmb.2638.
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 1122-1130
-
-
Kwon, S.C.1
Yi, H.2
Eichelbaum, K.3
Fohr, S.4
Fischer, B.5
You, K.T.6
-
11
-
-
84879222333
-
Mapping gene activity of Arabidopsis root hairs
-
Lan, P., Li, W., Lin, W. D., Santi, S., and Schmidt, W. (2013). Mapping gene activity of Arabidopsis root hairs. Genome Biol. 14:R67. doi: 10.1186/gb-2013-14-6-r67.
-
(2013)
Genome Biol
, vol.14
-
-
Lan, P.1
Li, W.2
Lin, W.D.3
Santi, S.4
Schmidt, W.5
-
12
-
-
84869236431
-
Complementary proteome and transcriptome profiling in phosphate-deficient Arabidopsis roots reveals multiple levels of gene regulation
-
Lan, P., Li, W., and Schmidt, W. (2012). Complementary proteome and transcriptome profiling in phosphate-deficient Arabidopsis roots reveals multiple levels of gene regulation. Mol. Cell. Proteomics 11, 1156-1166. doi: 10.1074/mcp.M112.020461.
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1156-1166
-
-
Lan, P.1
Li, W.2
Schmidt, W.3
-
13
-
-
79955639512
-
The enigma of eIF5A in the iron deficiency response of Arabidopsis
-
Lan, P., and Schmidt, W. (2011). The enigma of eIF5A in the iron deficiency response of Arabidopsis. Plant Signal. Behav. 6, 528-530. doi: 10.4161/psb.6.4.14747.
-
(2011)
Plant Signal. Behav
, vol.6
, pp. 528-530
-
-
Lan, P.1
Schmidt, W.2
-
14
-
-
79960581086
-
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
-
Lee, M. V., Topper, S. E., Hubler, S. L., Hose, J., Wenger, C. D., Coon, J. J., et al. (2011). A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Mol. Syst. Biol. 7:514. doi: 10.1038/msb.2011.48.
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 514
-
-
Lee, M.V.1
Topper, S.E.2
Hubler, S.L.3
Hose, J.4
Wenger, C.D.5
Coon, J.J.6
-
15
-
-
84879697865
-
Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots
-
Li, W., Lin, W. D., Ray, P., Lan, P., and Schmidt, W. (2013). Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots. Plant Physiol. 162, 1750-1763. doi: 10.1104/pp.113.217778.
-
(2013)
Plant Physiol
, vol.162
, pp. 1750-1763
-
-
Li, W.1
Lin, W.D.2
Ray, P.3
Lan, P.4
Schmidt, W.5
-
16
-
-
84862908082
-
Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis
-
Liu, M. J., Wu, S. H., Chen, H. M., and Wu, S. H. (2012). Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. Mol. Syst. Biol. 8:566. doi: 10.1038/msb.2011.97.
-
(2012)
Mol. Syst. Biol
, vol.8
, pp. 566
-
-
Liu, M.J.1
Wu, S.H.2
Chen, H.M.3
Wu, S.H.4
-
17
-
-
84861890038
-
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
-
Marquez, Y., Brown, J. W., Simpson, C., Barta, A., and Kalyna, M. (2012). Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 22, 1184-1195. doi: 10.1101/gr.134106.111.
-
(2012)
Genome Res
, vol.22
, pp. 1184-1195
-
-
Marquez, Y.1
Brown, J.W.2
Simpson, C.3
Barta, A.4
Kalyna, M.5
-
18
-
-
73249145845
-
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
-
Mustroph, A., Zanettia, M. E., Jang, C. J. H., Holtan, H. E., Repetti, P. P., Galbraith, D. W., et al. (2009). Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 106, 18843-18848. doi: 10.1073/pnas.0906131106.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 18843-18848
-
-
Mustroph, A.1
Zanettia, M.E.2
Jang, C.J.H.3
Holtan, H.E.4
Repetti, P.P.5
Galbraith, D.W.6
-
19
-
-
84884608076
-
The ribosomal protein Rpl22 controls ribosome composition by directly repressing expression of its own paralog, Rpl22l1
-
O'Leary, M. N., Schreiber, K. H., Zhang, Y., Duc, A. C., Rao, S., Hale, J. S., et al. (2013). The ribosomal protein Rpl22 controls ribosome composition by directly repressing expression of its own paralog, Rpl22l1. PLoS Genet. 9:e1003708. doi: 10.1371/journal.pgen.1003708.
-
(2013)
PLoS Genet
, vol.9
-
-
O'Leary, M.N.1
Schreiber, K.H.2
Zhang, Y.3
Duc, A.C.4
Rao, S.5
Hale, J.S.6
-
20
-
-
84899649317
-
Correlation of mRNA and protein abundance in the developing maize leaf
-
Ponnala, L., Wang, Y., Sun, Q., and van Wijk, K. J. (2014). Correlation of mRNA and protein abundance in the developing maize leaf. Plant J. 78, 424-440. doi: 10.1111/tpj.12482.
-
(2014)
Plant J
, vol.78
, pp. 424-440
-
-
Ponnala, L.1
Wang, Y.2
Sun, Q.3
van Wijk, K.J.4
-
21
-
-
0345602742
-
Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
-
Preiss, T., Baron-Benhamou, J., Ansorge, W., and Hentze, M. W. (2003). Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat. Struct. Biol. 10, 1039-1047. doi: 10.1038/nsb1015.
-
(2003)
Nat. Struct. Biol
, vol.10
, pp. 1039-1047
-
-
Preiss, T.1
Baron-Benhamou, J.2
Ansorge, W.3
Hentze, M.W.4
-
22
-
-
84887260867
-
The transcriptional response of Arabidopsis leaves to Fe deficiency
-
Rodríguez-Celma, J., Pan, I. C., Li, W. F., Lan, P., Buckhout, T. J., and Schmidt, W. (2013). The transcriptional response of Arabidopsis leaves to Fe deficiency. Front. Plant Sci. 4:276. doi: 10.3389/fpls.2013.00276.
-
(2013)
Front. Plant Sci
, vol.4
, pp. 276
-
-
Rodríguez-Celma, J.1
Pan, I.C.2
Li, W.F.3
Lan, P.4
Buckhout, T.J.5
Schmidt, W.6
-
23
-
-
84870312202
-
Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors
-
Rosado, A., Li, R., van de Ven, W., Hsu, E., and Raikhel, N. V. (2012). Arabidopsis ribosomal proteins control developmental programs through translational regulation of auxin response factors. Proc. Natl. Acad. Sci. U.S.A. 109, 19537-19544. doi: 10.1073/pnas.1214774109.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 19537-19544
-
-
Rosado, A.1
Li, R.2
van de Ven, W.3
Hsu, E.4
Raikhel, N.V.5
-
24
-
-
26944452075
-
Identification of cis -elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis
-
Tatematsu, K., Ward, S., Leyser, O., Kamiya, Y., and Nambara, E. (2005). Identification of cis -elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis. Plant Physiol. 138, 757-766. doi: 10.1104/pp.104.057984.
-
(2005)
Plant Physiol
, vol.138
, pp. 757-766
-
-
Tatematsu, K.1
Ward, S.2
Leyser, O.3
Kamiya, Y.4
Nambara, E.5
-
25
-
-
0033389293
-
Plant interstitial telomere motifs participate in the control of gene expression in root meristems
-
Tremousaygue, D., Manevski, A., Bardet, C., Lescure, N., and Lescure, B. (1999). Plant interstitial telomere motifs participate in the control of gene expression in root meristems. Plant J. 20, 553-561. doi: 10.1046/j.1365-313X.1999.00627.x.
-
(1999)
Plant J
, vol.20
, pp. 553-561
-
-
Tremousaygue, D.1
Manevski, A.2
Bardet, C.3
Lescure, N.4
Lescure, B.5
-
26
-
-
0035868428
-
A complete map of the human ribosomal protein genes: Assignment of 80 genes to the cytogenetic map and implications for human disorders
-
Uechi, T., Tanaka, T., and Kenmochi, N. (2001). A complete map of the human ribosomal protein genes: assignment of 80 genes to the cytogenetic map and implications for human disorders. Genomics 72, 223-230. doi: 10.1006/geno.2000.6470.
-
(2001)
Genomics
, vol.72
, pp. 223-230
-
-
Uechi, T.1
Tanaka, T.2
Kenmochi, N.3
-
27
-
-
84858439862
-
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
-
Vogel, C., and Marcotte, E. M. (2012). Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat. Rev. Genet. 13, 227-232. doi: 10.1038/nrg3185.
-
(2012)
Nat. Rev. Genet
, vol.13
, pp. 227-232
-
-
Vogel, C.1
Marcotte, E.M.2
-
28
-
-
85047687088
-
Reconstruction of protein networks from an atlas of maize seed proteotypes
-
Walley, J. W., Shen, Z., Sartor, R., Wu, K. J., Osborn, J., Smith, L. G., et al. (2013). Reconstruction of protein networks from an atlas of maize seed proteotypes. Proc. Natl. Acad. Sci. U.S.A. 110, E4808-E4817. doi: 10.1073/pnas.1319113110.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. E4808-E4817
-
-
Walley, J.W.1
Shen, Z.2
Sartor, R.3
Wu, K.J.4
Osborn, J.5
Smith, L.G.6
-
29
-
-
84887341869
-
Expression changes of ribosomal proteins in phosphate-and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition
-
Wang, J. Y., Lan, P., Gao, H. M., Zheng, L., Li, W. F., and Schmidt, W. (2013). Expression changes of ribosomal proteins in phosphate-and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition. BMC Genomics 14:783. doi: 10.1186/1471-2164-14-783.
-
(2013)
BMC Genomics
, vol.14
, pp. 783
-
-
Wang, J.Y.1
Lan, P.2
Gao, H.M.3
Zheng, L.4
Li, W.F.5
Schmidt, W.6
-
30
-
-
70349669222
-
Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus
-
Whittle, C. A., and Krochko, J. E. (2009). Transcript profiling provides evidence of functional divergence and expression networks among ribosomal protein gene paralogs in Brassica napus. Plant Cell 21, 2203-2219. doi: 10.1105/tpc.109.068411.
-
(2009)
Plant Cell
, vol.21
, pp. 2203-2219
-
-
Whittle, C.A.1
Krochko, J.E.2
-
31
-
-
84893707191
-
Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens
-
Wu, H. P., Su, Y. S., Chen, H. C., Chen, Y. R., Wu, C. C., Lin, W. D., et al. (2014). Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biol. 15:R10. doi: 10.1186/gb-2014-15-1-r10.
-
(2014)
Genome Biol
, vol.15
-
-
Wu, H.P.1
Su, Y.S.2
Chen, H.C.3
Chen, Y.R.4
Wu, C.C.5
Lin, W.D.6
|