Simulation of electric potentials and ion motion in planar electrode structures for lossless ion manipulations (SLIM)

Journal of the American Society for Mass Spectrometry

Volumn 25, Issue 11, 2014, Pages 1890-1896

  Garimella, Sandilya V B ^a   Ibrahim, Yehia M ^a   Webb, Ian K ^a   Tolmachev, Aleksey V ^a   Zhang, Xinyu ^a   Prost, Spencer A ^a   Anderson, Gordon A ^a   Smith, Richard D ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Gas phase ions; Ion mobility; Ion trajectory simulations; Lossless manipulations; Resolving power

Indexed keywords

ELECTRIC FIELDS; ELECTRODES; ION MOBILITY SPECTROMETERS; OPTICAL RESOLVING POWER; RUTHERFORD BACKSCATTERING SPECTROSCOPY; TUBES (COMPONENTS);

COMPUTATIONAL EVALUATION; EFFECTIVE POTENTIALS; GAS PHASE IONS; ION MOBILITY; ION TRAJECTORY SIMULATIONS; LOSSLESS; ORTHOGONAL CHANNELS; RADIO FREQUENCIES;

IONS;

ION;

ARTICLE; ELECTRIC FIELD; ELECTRIC POTENTIAL; ELECTRODE; ELECTROSPRAY; GAS; ION TRANSPORT; MASS SPECTROMETER; OPTICAL RESOLUTION; PLANAR ELECTRODE STRUCTURES FOR LOSSLESS ION MANIPULATION; SIMULATION; CHEMISTRY; COMPUTER SIMULATION; DEVICES; ELECTROMAGNETIC FIELD; EQUIPMENT DESIGN; MASS SPECTROMETRY;

COMPUTER SIMULATION; ELECTRODES; ELECTROMAGNETIC FIELDS; EQUIPMENT DESIGN; IONS; MASS SPECTROMETRY;

EID: 84910124760     PISSN: 10440305     EISSN: 18791123     Source Type: Journal    
DOI: 10.1007/s13361-014-0976-y     Document Type: Article

References (38)

1. Baker, E.S., Liu, T., Petyuk, V.A., Burnum-Johnson, K.E., Ibrahim, Y.M., Anderson, G.A., Smith, R.D.: Mass spectrometry for translational proteomics: progress and clinical implications. Genome Med. 4, 63 (2012)
2. Baker, E.S., Livesay, E.A., Orton, D.J., Moore, R.J., Danielson III, W.F., Prior, D.C., Ibrahim, Y.M., LaMarche, B.L., Mayampurath, A.M., Schepmoes, A.A., Hopkins, D.F., Tang, K., Smith, R.D., Belov, M.E.: An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies. J. Proteome Res. 9, 997-1006 (2010)
3. Page, J.S., Marginean, I., Baker, E.S., Kelly, R.T., Tang, K.Q., Smith, R.D.: Biases in Ion transmission through an electrospray ionization-mass spectrometry capillary inlet. J. Am. Soc. Mass Spectrom. 20, 2265-2272 (2009)
4. Page, J.S., Kelly, R.T., Tang, K., Smith, R.D.: Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface. J. Am. Soc. Mass Spectrom. 18, 1582-1590 (2007)
5. Page, J.S., Tang, K., Smith, R.D.: An electrodynamic ion funnel interface for greater sensitivity and higher throughput with linear ion trap mass spectrometers. Int. J. Mass Spectrom. 265, 244-250 (2007)
6. Kemper, P.R., Dupuis, N.F., Bowers, M.T.: A new, higher resolution, ion mobility mass spectrometer. Int. J. Mass Spectrom. 287, 46-57 (2009)
7. Masuda, S., Fujibaya, K., Ishida, K., Inaba, H.: Confinement and transportation of charged aerosol clouds via electric curtain. Electr. Eng. Jpn. 92, 43-52 (1973)
8. Masuda, S., Washizu, M., Kawabata, I.: Movement of blood cells in liquid by nonuniform traveling field. IEEE T Ind. Appl. 24, 217-222 (1988)
9. Masuda, S., Fujibayashi, K., Ishida, K.: Electrodynamical behavior of charged aerosol particles in non-uniform alternating fields and its application in dust control. Staub-Reinhaltungs del Luft. 30(11), 449-456 (1970)
10. Takamine, A., Wada, M., Ishida, Y., Nakamura, T., Okada, K., Yamazaki, Y., Kambara, T., Kanai, Y., Kojima, T.M., Nakai, Y., Oshima, N., Yoshida, A., Kubo, T., Ohtani, S., Noda, K., Katayama, I., Hostain, P., Varentsov, V., Wollnik, H.: Space-charge effects in the catcher gas cell of a rf ion guide. Rev. Sci. Instrum. 76, 103503-1-103503-6 (2005)
11. Wada, M., Ishida, Y., Nakamura, T., Yamazaki, Y., Kambara, T., Ohyama, H., Kanai, Y., Kojima, T.M., Nakai, Y., Ohshima, N., Yoshida, A., Kubo, T., Matsuo, Y., Fukuyama, Y., Okada, K., Sonoda, T., Ohtani, S., Noda, K., Kawakami, H., Katayama, I.: Slow RI-beams from projectile fragment separators. Nucl. Instrum. Methods B 204, 570-581 (2003)
12. Arai, F., Ito, Y., Wada, M., Schury, P., Sonoda, T., Mita, H.: Investigation of the ion surfing transport method with a circular rf carpet. Int. J. Mass Spectrom. 362, 56-58 (2014)
13. Naimi, S., Nakamura, S., Ito, Y., Mita, H., Okada, K., Ozawa, A., Schury, P., Sonoda, T., Takamine, A., Wada, M., Wollnik, H.: An rf-carpet electrospray ion source to provide isobaric mass calibrants for trans-uranium elements. Int. J. Mass Spectrom. 337, 24-28 (2013)
14. Bollen, G.: " Ion surfing " with radiofrequency carpets. Int. J. Mass Spectrom. 299, 131-138 (2011)
15. Pletcher, R.H., Tannehill, J.C., Anderson, D.A.: Computational Fluid Mechanics and Heat Transfer. CRC Press Boca Raton, FL: 45-60 (2013)
16. Pearson, C.E., Leibrandt, D.R., Bakr, W.S., Mallard, W.J., Brown, K.R., Chuang, I.L.: Experimental investigation of planar ion traps. Phys. Rev. A 73, 032307-1-032307-12 (2006)
17. Webb, I.K., Garimella, S.V.B., Tolmachev, A.V., Chen, T.-C., Zhang, X., Norheim, R.V., Prost, S.A., LaMarche, B., Anderson, G.A., Ibrahim, Y.M., Smith, R.D.: Experimental evaluation and optimization for lossless ion manipulations for ion mobility/time-of-flight mass spectrometry. Anal. Chem (2014). doi: 10.1021/ac502055e
18. Prasad, S., Tang, K., Manura, D., Papanastasiou, D., Smith, R.D.: Simulation of ion motion in FAIMS through combined use of SIMION and modified SDS. Anal. Chem. 81, 8749-8757 (2009)
19. Appelhans, A.D., Dahl, D.A.: SIMION ion optics simulations at atmospheric pressure. Int. J. Mass Spectrom. 244, 1-14 (2005)
20. Lai, H., McJunkin, T.R., Miller, C.J., Scott, J.R., Almirall, J.R.: The predictive power of SIMION/SDS simulation software for modeling ion mobility spectrometry instruments. Int. J. Mass Spectrom. 276, 1-8 (2008)
21. Dahl, D.A., McJunkin, T.R., Scott, J.R.: Comparison of ion trajectories in vacuum and viscous environments using SIMION: insights for instrument design. Int. J. Mass Spectrom. 266, 156-165 (2007)
22. Clowers, B.H., Ibrahim, Y.M., Prior, D.C., Danielson III, W.F., Belov, M.E., Smith, R.D.: Enhanced ion utilization efficiency using an electrodynamic ion funnel trap as an injection mechanism for ion mobility spectrometry. Anal. Chem. 80, 612-623 (2008)
23. Ibrahim, Y.M., Belov, M.E., Liyu, A.V., Smith, R.D.: Automated gain control ion funnel trap for orthogonal time-of-flight mass spectrometry. Anal. Chem. 80, 5367-5376 (2008)
24. Tolmachev, A.V., Webb, I.K., Ibrahim, Y.M., Garimella, S.V.B, Zhang, X., Anderson, G.A., Smith, R.D.: Characterization of ion dynamics in structures for lossless ion manipulations. Anal. Chem. accepted (2014). doi: 10.1021/ac502054p
25. Moore R.B.: Buffer gas cooling of ion beams. Available at: http://www.physics.mcgill.ca/%7Emoore/Notes/BeamCooling.pdf. Accessed August 2014 (2002)
26. Ibrahim, Y., Belov, M.E., Tolmachev, A.V., Prior, D.C., Smith, R.D.: Ion funnel trap interface for orthogonal time-of-flight mass spectrometry. Anal. Chem. 79, 7845-7852 (2007)
27. Webb, I.K., Garimella, S.V.B., Tolmachev, A.V., Chen, T.-C., Zhang, X., Cox, J., Norheim, R.V., Prost, S.A., LaMarche, B., Anderson, G.A., Ibrahim, Y.M., Smith, R.D.: Mobility-resolved ion selection in uniform drift field ion mobility spectrometry/mass spectrometry; dynamic switching in structures for lossless ion manipulations. Anal. Chem. Submitted (2014)
28. Tolmachev, A.V., Vilkov, A.N., Bogdanov, B., Pasa-Tolic, L., Masselon, C.D., Smith, R.D.: Collisional activation of ions in rf ion traps and ion guides: the effective ion temperature treatment. J. Am. Soc. Mass Spectrom. 15, 1616-1628 (2004)
29. Webb, I.K., Gao, Y., Londry, F.A., McLuckey, S.A.: Trapping mode dipolar DC collisional activation in the rf-only ion guide of a linear ion trap/time-of-flight instrument for gaseous bio-ion declustering. J. Mass Spectrom. 48, 1059-1065 (2013)
30. Prentice, B.M., McLuckey, S.A.: Dipolar DC collisional activation in a " stretched " 3-D ion trap: the effect of higher order fields on rf-heating. J. Am. Soc. Mass Spectrom. 23, 736-744 (2012)
31. Prentice, B.M., Santini, R.E., McLuckey, S.A.: Adaptation of a 3-D quadrupole ion trap for dipolar DC collisional activation. J. Am. Soc. Mass Spectrom. 22, 1486-1492 (2011)
32. Asano, K.G., Goeringer, D.E., McLuckey, S.A.: Thermal dissociation in the quadrupole ion trap: ions derived from leucine enkephalin. Int. J. Mass Spectrom. 185, 207-219 (1999)
33. n functionality. Int. J. Mass Spectrom. 306, 114-122 (2011)
34. Lin, Z.Q., Tan, L., Garimella, S., Li, L.F., Chen, T.C., Xu, W., Xia, Y., Ouyang, Z.: Characterization of a DAPI-RIT-DAPI system for gas-phase ion/molecule and ion/ion reactions. J. Am. Soc. Mass Spectrom. 25, 48-56 (2014)
35. Webb, I.K., Mentinova, M., Mcgee, W.M., McLuckey, S.A.: Gas-phase intramolecular protein crosslinking via ion/ion reactions: ubiquitin and a homobifunctional sulfo-NHS ester. J. Am. Soc. Mass Spectrom. 24, 733-743 (2013)
36. Xia, Y., Chrisman, P.A., Pitteri, S.J., Erickson, D.E., McLuckey, S.A.: Ion/molecule reactions of cation radicals formed from protonated polypeptides via gas-phase ion/ion electron transfer. J. Am. Chem. Soc. 128, 11792-11798 (2006)
37. Xia, Y., McLuckey, S.A.: Evolution of instrumentation for the study of gas-phase ion/ion chemistry via mass spectrometry. J. Am. Soc. Mass Spectrom. 19, 173-189 (2008)
38. Davis, E.J., Dwivedi, P., Tam, M., Siems, W.F., Hill, H.H.: High-pressure ion mobility spectrometry. Anal. Chem. 81, 3270-3275 (2009)