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Volumn 6, Issue 11, 2014, Pages 4424-4436

Genetic diversity of PRRS virus collected from air samples in four different regions of concentrated swine production during a high incidence season

Author keywords

Air filtration; Livestock diseases; Molecular epidemiology; Porcine; Porcine reproductive and respiratory syndrome; Virus

Indexed keywords

AIR ANALYSIS; ARTERIVIRUS; ARTICLE; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; SEQUENCE HOMOLOGY; SIMULATION; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; EPIDEMIOLOGY; GENETIC VARIATION; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; PIG; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME VIRUS; PREVALENCE; UNITED STATES;

EID: 84910120889     PISSN: 19994915     EISSN: 19994915     Source Type: Journal    
DOI: 10.3390/v6114424     Document Type: Article
Times cited : (22)

References (37)
  • 2
    • 0030740903 scopus 로고    scopus 로고
    • Epidemiology of porcine reproductive and respiratory syndrome (PRRS): An overview
    • Albina, E. Epidemiology of porcine reproductive and respiratory syndrome (PRRS): An overview. Vet. Microbiol. 1997, 55, 309-316.
    • (1997) Vet. Microbiol , vol.55 , pp. 309-316
    • Albina, E.1
  • 4
    • 0030634897 scopus 로고    scopus 로고
    • Nidovirales: A new order comprising Coronaviridae and Arteriviridae
    • Cavanagh, D. Nidovirales: A new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 1997, 142, 629-633.
    • (1997) Arch. Virol , vol.142 , pp. 629-633
    • Cavanagh, D.1
  • 5
    • 78649326444 scopus 로고    scopus 로고
    • The structural biology of PRRSV
    • Dokland, T. The structural biology of PRRSV. Virus Res. 2010, 154, 86-97.
    • (2010) Virus Res , vol.154 , pp. 86-97
    • Dokland, T.1
  • 7
    • 67650700613 scopus 로고    scopus 로고
    • Evidence of long distance airborne transport of porcine reproductive and respiratory syndrome virus and Mycoplasma hyopneumoniae
    • Dee, S.; Otake, S.; Oliveira, S.; Deen, J. Evidence of long distance airborne transport of porcine reproductive and respiratory syndrome virus and Mycoplasma hyopneumoniae. Vet. Res. 2009, 40, 39.
    • (2009) Vet. Res , vol.40 , pp. 39
    • Dee, S.1    Otake, S.2    Oliveira, S.3    Deen, J.4
  • 8
    • 84861873714 scopus 로고    scopus 로고
    • Correlation among genetic, Euclidean, temporal, and herd ownership distances of porcine reproductive and respiratory syndrome virus variants in Quebec, Canada
    • Lambert, M.E.; Arsenault, J.; Poljak, Z.; D’Allaire, S. Correlation among genetic, Euclidean, temporal, and herd ownership distances of porcine reproductive and respiratory syndrome virus variants in Quebec, Canada. BMC Vet. Res. 2012, 8, 76.
    • (2012) BMC Vet. Res , vol.8 , pp. 76
    • Lambert, M.E.1    Arsenault, J.2    Poljak, Z.3    D’allaire, S.4
  • 9
    • 77957268786 scopus 로고    scopus 로고
    • Long-distance airborne transport of infectious PRRSV and Mycoplasma hyopneumoniae from a swine population infected with multiple viral variants
    • Otake S.; Dee, S.; Corzo, C.; Oliveira, S.; Deen, J. Long-distance airborne transport of infectious PRRSV and Mycoplasma hyopneumoniae from a swine population infected with multiple viral variants. Vet. Microbiol. 2010, 145, 198-208.
    • (2010) Vet. Microbiol , vol.145 , pp. 198-208
    • Otake, S.1    Dee, S.2    Corzo, C.3    Oliveira, S.4    Deen, J.5
  • 10
    • 84861565126 scopus 로고    scopus 로고
    • Evaluation of the long-term effect of air filtration on the occurrence of new PRRSV infections in large breeding herds in swine-dense regions
    • Dee, S.; Cano, J.P.; Spronk, G.; Reicks, D.; Ruen, P.; Pitkin, A.; Polson, D. Evaluation of the long-term effect of air filtration on the occurrence of new PRRSV infections in large breeding herds in swine-dense regions. Viruses 2012, 4, 654-662.
    • (2012) Viruses , vol.4 , pp. 654-662
    • Dee, S.1    Cano, J.P.2    Spronk, G.3    Reicks, D.4    Ruen, P.5    Pitkin, A.6    Polson, D.7
  • 11
    • 84355161531 scopus 로고    scopus 로고
    • Effect of modified-live porcine reproductive and respiratory syndrome virus (PRRSv) vaccine on the shedding of wild-type virus from an infected population of growing pigs
    • Linhares, D.C.; Cano, J.P.; Wetzell, T.; Nerem, J.; Torremorell, M.; Dee, S.A. Effect of modified-live porcine reproductive and respiratory syndrome virus (PRRSv) vaccine on the shedding of wild-type virus from an infected population of growing pigs. Vaccine 2012, 30, 407-413.
    • (2012) Vaccine , vol.30 , pp. 407-413
    • Linhares, D.C.1    Cano, J.P.2    Wetzell, T.3    Nerem, J.4    Torremorell, M.5    Dee, S.A.6
  • 12
    • 62749129348 scopus 로고    scopus 로고
    • Use of a production region model forevaluation of routes of transmission and protocols of biosecurity forPRRS virus
    • Pitkin, A.N.; Deen, J.; Dee, S.A. Use of a production region model forevaluation of routes of transmission and protocols of biosecurity forPRRS virus. Vet. Microbiol. 2009, 136, 1-7.
    • (2009) Vet. Microbiol , vol.136 , pp. 1-7
    • Pitkin, A.N.1    Deen, J.2    Dee, S.A.3
  • 13
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
    • Yang, Z.; Rannala, B. Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method. Mol. Biol. Evol. 1997, 14, 717-724.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 717-724
    • Yang, Z.1    Rannala, B.2
  • 14
    • 84983480196 scopus 로고    scopus 로고
    • United States Department of Agriculture. Census of Agriculture. Available online, accessed on 11 November
    • National Agricultural Statistic Service, United States Department of Agriculture. Census of Agriculture. Available online: http://quickstats.nass.usda.gov/ (accessed on 11 November 2014).
    • (2014) National Agricultural Statistic Service
  • 16
    • 84910145702 scopus 로고    scopus 로고
    • PRRS incidence/prevalence pilot study, 2012
    • St. Paul, MN, USA, 15-18 September, Available online, (accessed on 11 November 2014)
    • Tousignant, S.; Morrison, B. PRRS incidence/prevalence pilot study, 2012. In Proceedings of the 2012 Allen D. Leman Swine Conference, St. Paul, MN, USA, 15-18 September 2012; Volume 39. Available online: http://conservancy.umn.edu/handle/11299/139370 (accessed on 11 November 2014).
    • (2012) In Proceedings of the 2012 Allen D. Leman Swine Conference , vol.39
    • Tousignant, S.1    Morrison, B.2
  • 17
    • 84863260533 scopus 로고    scopus 로고
    • Detection of Porcine reproductive and respiratory syndrome virus (PRRSV) antibodies in oral fluid specimens using a commercial PRRSV serum antibody enzymelinked immunosorbent assay
    • Kittawornrat, A.; Prickett, J, Wang, C.; Olsen, C.; Irwin, C.; Panyasing, Y.; Ballagi, A.; Rice, A.; Main, R.; Johnson, J. et al. Detection of Porcine reproductive and respiratory syndrome virus (PRRSV) antibodies in oral fluid specimens using a commercial PRRSV serum antibody enzymelinked immunosorbent assay. J. Vet. Diagn. Invest. 2012, 24, 262-269.
    • (2012) J. Vet. Diagn. Invest , vol.24 , pp. 262-269
    • Kittawornrat, A.1    Prickett, J.2    Wang, C.3    Olsen, C.4    Irwin, C.5    Panyasing, Y.6    Ballagi, A.7    Rice, A.8    Main, R.9    Johnson, J.10
  • 18
    • 0034741633 scopus 로고    scopus 로고
    • Quantitative TaqMan RT-PCR for the detection and differentiation of European and North American strains of porcine reproductive and respiratory syndrome virus
    • Egli, C.; Thür, B.; Liu, L.; Hofmann, M.A. Quantitative TaqMan RT-PCR for the detection and differentiation of European and North American strains of porcine reproductive and respiratory syndrome virus. J. Virol. Methods 2001, 98, 63-75.
    • (2001) J. Virol. Methods , vol.98 , pp. 63-75
    • Egli, C.1    Thür, B.2    Liu, L.3    Hofmann, M.A.4
  • 19
    • 0027130980 scopus 로고
    • Enhanced replication of porcine reproductive and respiratory syndrome (PRRS) virus in a homogenous subpopulation of MA-104 cells
    • Kim, H.S.; Kwang, J.; Yoon, I.J.; Joo, H.S.; Frey, M.L. Enhanced replication of porcine reproductive and respiratory syndrome (PRRS) virus in a homogenous subpopulation of MA-104 cells. Arch. Virol. 1993, 430, 477-483.
    • (1993) Arch. Virol , vol.430 , pp. 477-483
    • Kim, H.S.1    Kwang, J.2    Yoon, I.J.3    Joo, H.S.4    Frey, M.L.5
  • 20
    • 33745158157 scopus 로고
    • A Simple method of estimating fifty percent endpoints
    • Reed, L.J.; Muench, H. A simple method of estimating fifty percent endpoints. Am. J. Hyg. 1938, 27, 493-497.
    • (1938) Am. J. Hyg , vol.27 , pp. 493-497
    • Reed, L.J.1    Muench, H.2
  • 21
    • 0028852340 scopus 로고
    • Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS virus
    • Murtaugh, M.P.; Elam, M.R.; Kakach, L.T. Comparison of the structural protein coding sequences of the VR-2332 and Lelystad virus strains of the PRRS virus. Arch. Virol. 1995, 140, 1451-1460.
    • (1995) Arch. Virol , vol.140 , pp. 1451-1460
    • Murtaugh, M.P.1    Elam, M.R.2    Kakach, L.T.3
  • 22
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32, 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 23
    • 84861380450 scopus 로고    scopus 로고
    • Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear, R.; Calcott, B.; Ho, S.Y.; Guindon, S. Partitionfinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 2012, 29, 1695-1701.
    • (2012) Mol. Biol. Evol , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.3    Guindon, S.4
  • 24
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A.J.; Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7, 214.
    • (2007) BMC Evol. Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 26
    • 34247141560 scopus 로고    scopus 로고
    • Estimating the integrated likelihood via posterior simulation using the harmonic mean identity
    • Bernardo, J.M., Bayarri, M.J., Berger, J.O., Eds.; Oxford University Press: Oxford, UK
    • Raftery, A.E.; Newton, M.A.; Satagopan, J.M.; Krivitsky, P.N. Estimating the integrated likelihood via posterior simulation using the harmonic mean identity. In Bayesian Statistics; Bernardo, J.M., Bayarri, M.J., Berger, J.O., Eds.; Oxford University Press: Oxford, UK, 2007; pp. 1-45.
    • (2007) Bayesian Statistics , pp. 1-45
    • Raftery, A.E.1    Newton, M.A.2    Satagopan, J.M.3    Krivitsky, P.N.4
  • 27
    • 53049110115 scopus 로고    scopus 로고
    • Available online, accessed on 11 November
    • Rambaut, A. FigTree v1.4: Tree figure drawing tool. Available online: http://tree.bio.ed.ac.uk/software/figtree/ (accessed on 11 November 2014).
    • (2014) FigTree v1.4: Tree figure drawing tool
    • Rambaut, A.1
  • 28
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT
    • Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 1999, 41, 95-98.
    • (1999) Nucleic Acids Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 29
    • 1042304216 scopus 로고    scopus 로고
    • Analyses of phylogenetics and evolution in R language
    • Paradis, E.; Claude, J.; Strimmer, K. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 2004, 20, 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.A.3
  • 30
    • 84875358948 scopus 로고    scopus 로고
    • Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
    • Badaoui, B.; Grande, R.; Calza, S.; Cecere, M.; Luini, M.; Stella, A.; Botti, S. Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth. BMC Vet. Res. 2013, 9, 58.
    • (2013) BMC Vet. Res , vol.9 , pp. 58
    • Badaoui, B.1    Grande, R.2    Calza, S.3    Cecere, M.4    Luini, M.5    Stella, A.6    Botti, S.7
  • 31
    • 84877717086 scopus 로고    scopus 로고
    • Bayesian analysis of risk factors for infection with a genotype of porcine reproductive and respiratory syndrome virus in Ontario swine herds using monitoring data
    • Kwong, G.P.S.; Poljak, Z.; Deardon, R.; Dewey, C.E.; Bayesian analysis of risk factors for infection with a genotype of porcine reproductive and respiratory syndrome virus in Ontario swine herds using monitoring data. Prev. Vet. Med. 2013, 110, 405-417.
    • (2013) Prev. Vet. Med , vol.110 , pp. 405-417
    • Kwong, G.P.S.1    Poljak, Z.2    Deardon, R.3    Dewey, C.E.4
  • 32
    • 84899976113 scopus 로고    scopus 로고
    • Spatial and temporal patterns of porcine reproductive and respiratory syndrome virus (PRRSV) genotypes in Ontario, Canada, 2004-2007
    • Rosendal, T.; Dewey, C.; Friendship, R.; Wootton, S.; Young, B.; Poljak, Z. Spatial and temporal patterns of porcine reproductive and respiratory syndrome virus (PRRSV) genotypes in Ontario, Canada, 2004-2007. BMC Vet. Res. 2014, 10, 83.
    • (2014) BMC Vet. Res , vol.10 , pp. 83
    • Rosendal, T.1    Dewey, C.2    Friendship, R.3    Wootton, S.4    Young, B.5    Poljak, Z.6
  • 37
    • 0020484671 scopus 로고
    • Long distance transport of foot-and-mouth disease virus over the sea
    • Gloster, J.; Sellers, R.F.; Donaldson, A.I. Long distance transport of foot-and-mouth disease virus over the sea. Vet. Rec. 1982, 110, 47-52.
    • (1982) Vet. Rec , vol.110 , pp. 47-52
    • Gloster, J.1    Sellers, R.F.2    Donaldson, A.I.3


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