Alterations in the Staphylococcus epidermidis biofilm transcriptome following interaction with whole human blood

Pathogens and Disease

Volumn 70, Issue 3, 2014, Pages 444-448

  França, Angela ^a,b   Carvalhais, Virgínia ^a,b   Maira Litrán, Tomás ^b   Vilanova, Manuel ^c   Cerca, Nuno ^a   Pier, Gerald ^b  

^a UNIVERSITY OF MINHO   (Portugal)

^b BRIGHAM AND WOMEN S HOSPITAL   (United States)

^c UNIVERSITY OF PORTO   (Portugal)

Author keywords

Iron metabolism; Pathogenesis; RNA sequencing

Indexed keywords

CARBOXYLIC ACID DERIVATIVE; IRON; KETONE DERIVATIVE; TRANSCRIPTOME;

AMINO ACID METABOLISM; AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL GENE; BLOODSTREAM INFECTION; EX VIVO STUDY; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; HUMAN; INTENSIVE CARE UNIT; INTRAVENOUS CATHETER; NONHUMAN; PRIORITY JOURNAL; STAPHYLOCOCCUS EPIDERMIDIS; SURVIVAL; UNITED STATES; BIOFILM; BLOOD; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; PHYSIOLOGY; STAPHYLOCOCCUS INFECTION;

BIOFILMS; BLOOD; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HUMANS; IRON; STAPHYLOCOCCAL INFECTIONS; STAPHYLOCOCCUS EPIDERMIDIS; TRANSCRIPTOME;

EID: 84910082031     PISSN: None     EISSN: 2049632X     Source Type: Journal    
DOI: 10.1111/2049-632X.12130     Document Type: Article

References (36)

1. Afonina G, Leduc I, Nepluev I, Jeter C, Routh P, Almond G, Orndorff PE, Hobbs M & Elkins C (2006) Immunization with the Haemophilus ducreyi hemoglobin receptor HgbA protects against infection in the swine model of chancroid. Infect Immun 74: 2224-2232.
2. Alteri CJ, Hagan EC, Sivick KE, Smith SN & Mobley HL (2009) Mucosal immunization with iron receptor antigens protects against urinary tract infection. PLoS Pathog 5: e1000586.
3. Baggerly KA, Deng L, Morris JS & Aldaz CM (2003) Differential expression in SAGE: accounting for normal between-library variation. Bioinformatics 19: 1477-1483.
4. Cerca F, Trigo G, Correia A, Cerca N, Azeredo J & Vilanova M (2011) SYBR green as a fluorescent probe to evaluate the biofilm physiological state of Staphylococcus epidermidis, using flow cytometry. Can J Microbiol 57: 850-856.
5. Chaffin DO, Taylor D, Skerrett SJ & Rubens CE (2012) Changes in the Staphylococcus aureus transcriptome during early adaptation to the lung. PLoS ONE 7: e41329.
6. Fradin C, Kretschmar M, Nichterlein T, Gaillardin C, d'Enfert C & Hube B (2003) Stage-specific gene expression of Candida albicans in human blood. Mol Microbiol 47: 1523-1543.
7. Fradin C, De Groot P, MacCallum D, Schaller M, Klis F, Odds FC & Hube B (2005) Granulocytes govern the transcriptional response, morphology and proliferation of Candida albicans in human blood. Mol Microbiol 56: 397-415.
8. Franca A, Melo L & Cerca N (2011) Comparison of RNA extraction methods from biofilm samples of Staphylococcus epidermidis. BMC Res Notes 4: 572.
9. Franca A, Freitas AI, Henriques AF & Cerca N (2012) Optimizing a qPCR gene expression quantification assay for S. epidermidis biofilms: a comparison between commercial kits and a customized protocol. PLoS ONE 7: e37480.
10. Franceschini A, Szklarczyk D, Frankild S et al. (2013) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41: D808-D815.
11. Friedman DB, Stauff DL, Pishchany G, Whitwell CW, Torres VJ & Skaar EP (2006) Staphylococcus aureus redirects central metabolism to increase iron availability. PLoS Pathog 2: e87.
12. Graham MR, Virtaneva K, Porcella SF, Barry WT, Gowen BB, Johnson CR, Wright FA & Musser JM (2005) Group A Streptococcus transcriptome dynamics during growth in human blood reveals bacterial adaptive and survival strategies. Am J Pathol 166: 455-465.
13. Jakubovics NS & Jenkinson HF (2001) Out of the iron age: new insights into the critical role of manganese homeostasis in bacteria. Microbiology 147: 1709-1718.
14. Jordan A & Reichard P (1998) Ribonucleotide reductases. Annu Rev Biochem 67: 71-98.
15. Juarez-Verdayes MA, Gonzalez-Uribe PM, Peralta H, Rodriguez-Martinez S, Jan-Roblero J, Escamilla-Hernandez R, Cancino-Diaz ME & Cancino-Diaz JC (2012) Detection of hssS, hssR, hrtA, and hrtB genes and their expression by hemin in Staphylococcus epidermidis. Can J Microbiol 58: 1063-1072.
16. Lyte M, Freestone PP, Neal CP, Olson BA, Haigh RD, Bayston R & Williams PH (2003) Stimulation of Staphylococcus epidermidis growth and biofilm formation by catecholamine inotropes. Lancet 361: 130-135.
17. Makrides SC (1998) Therapeutic inhibition of the complement system. Pharmacol Rev 50: 59-87.
18. Malachowa N, Whitney AR, Kobayashi SD et al. (2011) Global changes in Staphylococcus aureus gene expression in human blood. PLoS ONE 6: e18617.
19. Massonet C, Pintens V, Merckx R, Anne J, Lammertyn E & Van Eldere J (2006) Effect of iron on the expression of sirR and sitABC in biofilm-associated Staphylococcus epidermidis. BMC Microbiol 6: 103.
20. Mereghetti L, Sitkiewicz I, Green NM & Musser JM (2008) Extensive adaptive changes occur in the transcriptome of Streptococcus agalactiae (group B streptococcus) in response to incubation with human blood. PLoS ONE 3: e3143.
21. Modun B, Evans RW, Joannou CL & Williams P (1998a) Receptor- mediated recognition and uptake of iron from human transferrin by Staphylococcus aureus and Staphylococcus epidermidis. Infect Immun 66: 3591-3596.
22. Modun BJ, Cockayne A, Finch R & Williams P (1998b) The Staphylococcus aureus and Staphylococcus epidermidis transferrin- binding proteins are expressed in vivo during infection. Microbiology 144(Pt 4): 1005-1012.
23. Mollnes TE, Brekke OL, Fung M, Fure H, Christiansen D, Bergseth G, Videm V, Lappegard KT, Kohl J & Lambris JD (2002) Essential role of the C5a receptor in E coli-induced oxidative burst and phagocytosis revealed by a novel lepirudin-based human whole blood model of inflammation. Blood 100: 1869-1877.
24. Mortazavi A, Williams BA, McCue K, Schaeffer L & Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
25. Neal CP, Freestone PP, Maggs AF, Haigh RD, Williams PH & Lyte M (2001) Catecholamine inotropes as growth factors for Staphylococcus epidermidis and other coagulase-negative staphylococci. FEMS Microbiol Lett 194: 163-169.
26. Nolte O, Rickert A, Ehrhard I, Ledig S & Sonntag HG (2002) A modified ex vivo human whole blood model of infection for studying the pathogenesis of Neisseria meningitidis during septicemia. FEMS Immunol Med Microbiol 32: 91-95.
27. Oliveros JC (2007) VENNY. An interactive tool for comparing lists with Venn Diagrams. http://bioinfogp.cnb.csic.es/tools/venny/ index.html
28. Otto M (2009) Staphylococcus epidermidis-the 'accidental' pathogen. Nat Rev Microbiol 7: 555-567.
29. Pawitan Y, Michiels S, Koscielny S, Gusnanto A & Ploner A (2005) False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics 21: 3017-3024.
30. Skaar EP (2010) The battle for iron between bacterial pathogens and their vertebrate hosts. PLoS Pathog 6: e1000949.
31. Stranger-Jones YK, Bae T & Schneewind O (2006) Vaccine assembly from surface proteins of Staphylococcus aureus. P Natl Acad Sci USA 103: 16942-16947.
32. Thompson EA, Feavers IM & Maiden MC (2003) Antigenic diversity of meningococcal enterobactin receptor FetA, a vaccine component. Microbiology 149: 1849-1858.
33. Torres VJ, Stauff DL, Pishchany G, Bezbradica JS, Gordy LE, Iturregui J, Anderson KL, Dunman PM, Joyce S & Skaar EP (2007) A Staphylococcus aureus regulatory system that responds to host heme and modulates virulence. Cell Host Microbe 1: 109-119.
34. Vebo HC, Snipen L, Nes IF & Brede DA (2009) The transcriptome of the nosocomial pathogen Enterococcus faecalis V583 reveals adaptive responses to growth in blood. PLoS ONE 4: e7660.
35. Vuong C & Otto M (2002) Staphylococcus epidermidis infections. Microbes Infect 4: 481-489.
36. Yu NY, Wagner JR, Laird MR et al. (2010) PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 26: 1608-1615.