Overview of the protein coreference task in BioNLP Shared Task 2011

Proceedings of BioNLP Shared Task 2011 Workshop at the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, ACL HLT 2011

Volumn , Issue , 2011, Pages 74-82

  Nguyen, Ngan ^a   Kim, Jin Dong ^b   Tsujii, Jun'ichi ^c  

^a UNIVERSITY OF TOKYO   (Japan)

^b Database Center for Life Science   (Japan)

^c MICROSOFT RESEARCH ASIA   (China)

Author keywords

[No Author keywords available]

Indexed keywords

NATURAL LANGUAGE PROCESSING SYSTEMS;

COREFERENCE; COREFERENCE RESOLUTION; EVALUATION RESULTS; STATE-OF-THE-ART PERFORMANCE; SYSTEM DEVELOPMENT;

PROTEINS;

EID: 84910063424     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (16)

1. B. Baldwin. 1997. Cogniac: High precision with limited knowledge and linguistic resources. In Proceedings of the ACL’97/EACL’97 Workshop on Operational Factors in Practical, Robust Anaphora Resolution, pages 38–45, Madrid, Spain.
2. Cosmin Bejan and Sanda Harabagiu. 2010. Unsupervised event coreference resolution with rich linguistic features. In Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics, pages 1412–1422, Uppsala, Sweden, July. Association for Computational Linguistics.
3. Nancy Chinchor. 1998. Overview of MUC-7/MET-2. In Message Understanding Conference (MUC-7) Proceedings.
4. Yu hsiang Lin and Tyne Liang. 2004. Pronominal and sortal anaphora resolution for biomedical literature. In In Proceedings of ROCLING XVI: Conference on Computational Linguistics and Speech Processing.
5. Jin-Dong Kim, Tomoko Ohta, and Jun’ichi Tsujii. 2008. Corpus annotation for mining biomedical events from lterature. BMC Bioinformatics, 9(1):10.
6. Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, and Jun’ichi Tsujii. 2009. Overview of BioNLP’09 Shared Task on Event Extraction. In Proceedings of Natural Language Processing in Biomedicine (BioNLP) NAACL 2009 Workshop, pages 1–9.
7. Makoto Miwa, Rune Sætre, Jin-Dong Kim, and Jun’ichi Tsujii. 2010. Event extraction with complex event classification using rich features. Journal of Bioinformatics and Computational Biology (JBCB), 8(1):131–146, February.
8. Vincent Ng. 2010. Supervised noun phrase coreference research: The first fifteen years. In Proceedings of the ACL, pages 1396–1411.
9. Ngan Nguyen and Jin-Dong Kim. 2008. Exploring domain differences for the design of a pronoun resolution system for biomedical texts. In Proceedings of 22nd International Conference on Computational Linguistics (COLING-2008).
10. T Ohta, Y Tateisi, H Mima, and J Tsujii. 2002. Genia corpus: an annotated research abstract corpus in molecular biology domain. Proceedings of the Human Language Technology Conference (HLT 2002), San Diego, California, pages 73–77.
11. Karthik Raghunathan, Heeyoung Lee, Sudarshan Rangarajan, Nate Chambers, Mihai Surdeanu, Dan Jurafsky, and Christopher Manning. 2010. A multi-pass sieve for coreference resolution. In Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing, pages 492–501, October.
12. V. Stoyanov, C. Cardie, N. Gilbert, E. Riloff, D. Buttler, and D. Hysom. 2010a. Coreference resolution with reconcile. In Proceedings of the Conference of the 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010).
13. V. Stoyanov, C. Cardie, N. Gilbert, E. Riloff, D. Buttler, and D. Hysom. 2010b. Reconcile: A coreference resolution platform. In Tech Report - Cornell University.
14. Stephanie Strassel, Mark Przybocki, Kay Peterson, Zhiyi Song, and Kazuaki Maeda. 2008. Linguistic Resources and Evaluation Techniques for Evaluation of Cross-Document Automatic Content Extraction. In Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008).
15. Jian Su, Xiaofeng Yang, Huaqing Hong, Yuka Tateisi, and Jun’ichi Tsujii. 2008. Coreference Resolution in Biomedical Texts: a Machine Learning Approach. In Ontologies and Text Mining for Life Sciences’08.
16. Yuka Tateisi, Akane Yakushiji, Tomoko Ohta, and Jun’ichi Tsujii. 2005. Syntax annotation for the genia corpus. In International Joint Conference on Natural Language Processing, pages 222–227, Jeju Island, Korea, October.