MRI parcellation of ex vivo medial temporal lobe

NeuroImage

Volumn 93, Issue , 2014, Pages 252-259

  Augustinack, Jean C ^a   Magnain, Caroline ^a   Reuter, Martin ^a   van der Kouwe, André J W ^a   Boas, David ^a   Fischl, Bruce ^a,b  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Brodmann's area 28; Brodmann's area 35; Entorhinal; Localization; Mapping; Perirhinal

Indexed keywords

BRAIN CORTEX; BRAIN MAPPING; BRODMANN AREA 28; BRODMANN AREA 35; CONTRAST ENHANCEMENT; CYTOARCHITECTURE; DENTATE GYRUS GRANULAR LAYER; ENTORHINAL CORTEX; EX VIVO STUDY; GRAY MATTER; HIPPOCAMPUS; HUMAN; IMAGE ANALYSIS; MEDIAL TEMPORAL LOBE; NEUROIMAGING; NOMENCLATURE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PERIRHINAL CORTEX; PRIORITY JOURNAL; REVIEW; ANATOMY AND HISTOLOGY; TEMPORAL LOBE;

BRAIN MAPPING; HUMANS; MAGNETIC RESONANCE IMAGING; TEMPORAL LOBE;

EID: 84909991359     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.05.053     Document Type: Review

References (71)

1. Amunts K., Zilles K. Advances in cytoarchitectonic mapping of the human cerebral cortex. Neuroimaging Clin. N. Am. 2001, 11:151-169. (vii).
2. Amunts K., Kedo O., Kindler M., Pieperhoff P., Mohlberg H., Shah N.J., Habel U., Schneider F., Zilles K. Cytoarchitectonic mapping of the human amygdala, hippocampal region and entorhinal cortex: intersubject variability and probability maps. Anat. Embryol. (Berl.) 2005, 210:343-352.
3. Arnold S.E., Hyman B.T., Flory J., Damasio A.R., Van Hoesen G.W. The topographical and neuroanatomical distribution of neurofibrillary tangles and neuritic plaques in the cerebral cortex of patients with Alzheimer's disease. Cereb. Cortex 1991, 1:103-116.
4. Arnold S.E., Hyman B.T., Van Hoesen G.W., Damasio A.R. Some cytoarchitectural abnormalities of the entorhinal cortex in schizophrenia. Arch. Gen. Psychiatry 1991, 48:625-632.
5. Arriagada P.V., Growdon J.H., Hedley-Whyte E.T., Hyman B.T. Neurofibrillary tangles but not senile plaques parallel duration and severity of Alzheimer's disease. Neurology 1992, 42:631-639.
6. Augustinack J.C., van der Kouwe A.J., Blackwell M.L., Salat D.H., Wiggins C.J., Frosch M.P., Wiggins G.C., Potthast A., Wald L.L., Fischl B.R. Detection of entorhinal layer II using 7Tesla magnetic resonance imaging. Ann. Neurol. 2005, 57:489-494.
7. Augustinack J.C., Helmer K., Huber K.E., Kakunoori S., Zollei L., Fischl B. Direct visualization of the perforant pathway in the human brain with ex vivo diffusion tensor imaging. Front. Hum. Neurosci. 2010, 4:42.
8. Augustinack J.C., Huber K.E., Stevens A.A., Roy M., Frosch M.P., van der Kouwe A.J., Wald L.L., Van Leemput K., McKee A.C., Fischl B. Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI. Neuroimage 2013, 64:32-42.
9. Bennett D.A., Schneider J.A., Arvanitakis Z., Kelly J.F., Aggarwal N.T., Shah R.C., Wilson R.S. Neuropathology of older persons without cognitive impairment from two community-based studies. Neurology 2006, 66:1837-1844.
10. Blamire A.M., Rowe J.G., Styles P., McDonald B. Optimising imaging parameters for post mortem MR imaging of the human brain. Acta Radiol. 1999, 40:593-597.
11. Bloch F. Nuclear induction. Phys. Rev. 1946, 70:460-474.
12. Bock N.A., Kocharyan A., Liu J.V., Silva A.C. Visualizing the entire cortical myelination pattern in marmosets with magnetic resonance imaging. J. Neurosci. Methods 2009, 185:15-22.
13. Braak H., Braak E. On areas of transition between entorhinal allocortex and temporal isocortex in the human brain. Normal morphology and lamina-specific pathology in Alzheimer's disease. Acta Neuropathol. 1985, 68:325-332.
14. Braak H., Braak E. Neuropathological stageing of Alzheimer-related changes. Acta Neuropathol. (Berl.) 1991, 82:239-259.
15. Braak H., Braak E. The human entorhinal cortex: normal morphology and lamina-specific pathology in various diseases. Neurosci. Res. 1992, 15:6-31.
16. Braak H., Braak E. Staging of Alzheimer's disease-related neurofibrillary changes. Neurobiol. Aging 1995, 16:271-278. (discussion 278-284).
17. Brodmann K. Vergleichende Lokalisationslehre der Groshirnrinde 1909, Verlag von Johann Ambrosius Barth, Leipzig.
18. Buckley M.J., Gaffan D. Impairment of visual object-discrimination learning after perirhinal cortex ablation. Behav. Neurosci. 1997, 111:467-475.
19. Buckley M.J., Gaffan D. Perirhinal cortex ablation impairs configural learning and paired-associate learning equally. Neuropsychologia 1998, 36:535-546.
20. Buckley M.J., Gaffan D. Perirhinal cortex ablation impairs visual object identification. J. Neurosci. 1998, 18:2268-2275.
21. Cajal S. Histology of the Nervous System of Man and Vertebrates. Oxford University Press 1995, Oxford, New York. N. Swanson, L.W. Swanson (Eds.).
22. Ceritoglu C., Wang L., Selemon L.D., Csernansky J.G., Miller M.I., Ratnanather J.T. Large deformation diffeomorphic metric mapping registration of reconstructed 3D histological section images and in vivo MR images. Front. Hum. Neurosci. 2010, 4:43.
23. Cohen-Adad J., Polimeni J.R., Helmer K.G., Benner T., McNab J.A., Wald L.L., Rosen B.R., Mainero C. T(2)* mapping and B(0) orientation-dependence at 7T reveal cyto- and myeloarchitecture organization of the human cortex. Neuroimage 2012, 60:1006-1014.
24. Dawe R.J., Bennett D.A., Schneider J.A., Vasireddi S.K., Arfanakis K. Postmortem MRI of human brain hemispheres: T2 relaxation times during formaldehyde fixation. Magn. Reson. Med. 2009, 61:810-818.
25. Ding S.L., Van Hoesen G.W. Borders, extent, and topography of human perirhinal cortex as revealed using multiple modern neuroanatomical and pathological markers. Hum. Brain Mapp. 2010, 31:1359-1379.
26. Ding S.L., Van Hoesen G.W., Cassell M.D., Poremba A. Parcellation of human temporal polar cortex: a combined analysis of multiple cytoarchitectonic, chemoarchitectonic, and pathological markers. J. Comp. Neurol. 2009, 514:595-623.
27. Duyn J.H., van Gelderen P., Li T.Q., de Zwart J.A., Koretsky A.P., Fukunaga M. High-field MRI of brain cortical substructure based on signal phase. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:11796-11801.
28. Eacott M.J., Gaffan D., Murray E.A. Preserved recognition memory for small sets, and impaired stimulus identification for large sets, following rhinal cortex ablations in monkeys. Eur. J. Neurosci. 1994, 6:1466-1478.
29. Eickhoff S., Walters N.B., Schleicher A., Kril J., Egan G.F., Zilles K., Watson J.D., Amunts K. High-resolution MRI reflects myeloarchitecture and cytoarchitecture of human cerebral cortex. Hum. Brain Mapp. 2005, 24:206-215.
30. Fischl B., Liu A., Dale A.M. Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortex. IEEE Trans. Med. Imaging 2001, 20:70-80.
31. Fischl B., Salat D.H., van der Kouwe A.J., Makris N., Segonne F., Quinn B.T., Dale A.M. Sequence-independent segmentation of magnetic resonance images. Neuroimage 2004, 23(Suppl. 1):S69-S84.
32. Fischl B., Rajendran N., Busa E., Augustinack J., Hinds O., Yeo B.T., Mohlberg H., Amunts K., Zilles K. Cortical folding patterns and predicting cytoarchitecture. Cereb. Cortex 2008, 18:1973-1980.
33. Fischl B., Stevens A.A., Rajendran N., Yeo B.T., Greve D.N., Van Leemput K., Polimeni J.R., Kakunoori S., Buckner R.L., Pacheco J., Salat D.H., Melcher J., Frosch M.P., Hyman B.T., Grant P.E., Rosen B.R., van der Kouwe A.J., Wiggins G.C., Wald L.L., Augustinack J.C. Predicting the location of entorhinal cortex from MRI. Neuroimage 2009, 47:8-17.
34. Fukunaga M., Li T.Q., van Gelderen P., de Zwart J.A., Shmueli K., Yao B., Lee J., Maric D., Aronova M.A., Zhang G., Leapman R.D., Schenck J.F., Merkle H., Duyn J.H. Layer-specific variation of iron content in cerebral cortex as a source of MRI contrast. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:3834-3839.
35. Geyer S., Weiss M., Reimann K., Lohmann G., Turner R. Microstructural parcellation of the human cerebral cortex - from Brodmann's post-mortem map to in vivo mapping with high-field magnetic resonance imaging. Front. Hum. Neurosci. 2011, 5:19.
36. Gloor P. The Temporal Lobe and Limbic System 1997, Oxford University Press, New York, New York.
37. Gomez-Isla T., Hollister R., West H., Mui S., Growdon J.H., Petersen R.C., Parisi J.E., Hyman B.T. Neuronal loss correlates with but exceeds neurofibrillary tangles in Alzheimer's disease. Ann. Neurol. 1997, 41:17-24.
38. Huang D., Swanson E.A., Lin C.P., Schuman J.S., Stinson W.G., Chang W., Hee M.R., Flotte T., Gregory K., Puliafito C.A., et al. Optical coherence tomography. Science 1991, 254:1178-1181.
39. Hyman B.T., Van Hoesen G.W., Damasio A.R., Barnes C.L. Alzheimer's disease: cell-specific pathology isolates the hippocampal formation. Science 1984, 225:1168-1170.
40. Insausti R., Tunon T., Sobreviela T., Insausti A.M., Gonzalo L.M. The human entorhinal cortex: a cytoarchitectonic analysis. J. Comp. Neurol. 1995, 355:171-198.
41. Insausti R., Insausti A.M., Sobreviela M.T., Salinas A., Martinez-Penuela J.M. Human medial temporal lobe in aging: anatomical basis of memory preservation. Microsc. Res. Tech. 1998, 43:8-15.
42. Knopman D.S., Parisi J.E., Salviati A., Floriach-Robert M., Boeve B.F., Ivnik R.J., Smith G.E., Dickson D.W., Johnson K.A., Petersen L.E., McDonald W.C., Braak H., Petersen R.C. Neuropathology of cognitively normal elderly. J. Neuropathol. Exp. Neurol. 2003, 62:1087-1095.
43. Kordower J.H., Chu Y., Stebbins G.T., DeKosky S.T., Cochran E.J., Bennett D., Mufson E.J. Loss and atrophy of layer II entorhinal cortex neurons in elderly people with mild cognitive impairment. Ann. Neurol. 2001, 49:202-213.
44. Krimer L.S., Hyde T.M., Herman M.M., Saunders R.C. The entorhinal cortex: an examination of cyto- and myeloarchitectonic organization in humans. Cereb. Cortex 1997, 7:722-731.
45. Langkammer C., Krebs N., Goessler W., Scheurer E., Yen K., Fazekas F., Ropele S. Susceptibility induced gray-white matter MRI contrast in the human brain. Neuroimage 2012, 59:1413-1419.
46. Lee J., Shmueli K., Fukunaga M., van Gelderen P., Merkle H., Silva A.C., Duyn J.H. Sensitivity of MRI resonance frequency to the orientation of brain tissue microstructure. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:5130-5135.
47. Lee J., van Gelderen P., Kuo L.W., Merkle H., Silva A.C., Duyn J.H. T2*-based fiber orientation mapping. Neuroimage 2011, 57:225-234.
48. Lee J., Shmueli K., Kang B.T., Yao B., Fukunaga M., van Gelderen P., Palumbo S., Bosetti F., Silva A.C., Duyn J.H. The contribution of myelin to magnetic susceptibility-weighted contrasts in high-field MRI of the brain. Neuroimage 2012, 59:3967-3975.
49. Lorente de No R. Studies on the structure of the cerebral cortex. J. Psychol. Neurol. 1933, 45.
50. Meunier M., Hadfield W., Bachevalier J., Murray E.A. Effects of rhinal cortex lesions combined with hippocampectomy on visual recognition memory in rhesus monkeys. J. Neurophysiol. 1996, 75:1190-1205.
51. Morosan P., Schleicher A., Amunts K., Zilles K. Multimodal architectonic mapping of human superior temporal gyrus. Anat. Embryol. (Berl.) 2005, 210:401-406.
52. Murray E.A., Mishkin M. Visual recognition in monkeys following rhinal cortical ablations combined with either amygdalectomy or hippocampectomy. J. Neurosci. 1986, 6:1991-2003.
53. Nagara H., Inoue T., Koga T., Kitaguchi T., Tateishi J., Goto I. Formalin fixed brains are useful for magnetic resonance imaging (MRI) study. J. Neurol. Sci. 1987, 81:67-77.
54. Ono M., Kubik S., Abernathey C.D. Atlas of the Cerebral Sulci 1990, Georg Thieme Verlag, New York.
55. Pfefferbaum A., Sullivan E.V., Adalsteinsson E., Garrick T., Harper C. Postmortem MR imaging of formalin-fixed human brain. Neuroimage 2004, 21:1585-1595.
56. Ragan T., Kadiri L.R., Venkataraju K.U., Bahlmann K., Sutin J., Taranda J., Arganda-Carreras I., Kim Y., Seung H.S., Osten P. Serial two-photon tomography for automated ex vivo mouse brain imaging. Nat. Methods 2012, 9:255-258.
57. Reuter M., Sand P., Huber K., Nguyen K., Saygin Z., Rosas H.D., Augustinack J., Fischl B. Registration of histology and MRI using blockface as intermediate space 2012.
58. Sand P., Teller S. Particle video: long-range motion estimation using point trajectories. Int. J. Comput. Vis. 2008, 80:72-91.
59. Savva G.M., Wharton S.B., Ince P.G., Forster G., Matthews F.E., Brayne C. Age, neuropathology, and dementia. N. Engl. J. Med. 2009, 360:2302-2309.
60. Srinivasan V.J., Radhakrishnan H., Jiang J.Y., Barry S., Cable A.E. Optical coherence microscopy for deep tissue imaging of the cerebral cortex with intrinsic contrast. Opt. Express 2012, 20:2220-2239.
61. Suzuki W.A., Amaral D.G. Perirhinal and parahippocampal cortices of the macaque monkey: cortical afferents. J. Comp. Neurol. 1994, 350:497-533.
62. Suzuki W.A., Amaral D.G. Topographic organization of the reciprocal connections between the monkey entorhinal cortex and the perirhinal and parahippocampal cortices. J. Neurosci. 1994, 14:1856-1877.
63. Talairach J., Tournoux P. Co-planar stereotaxic atlas of the human brain 1988.
64. Taylor K.I., Probst A. Anatomic localization of the transentorhinal region of the perirhinal cortex. Neurobiol. Aging 2008, 29:1591-1596.
65. Tovi M., Ericsson A. Measurements of T1 and T2 over time in formalin-fixed human whole-brain specimens. Acta Radiol. 1992, 33:400-404.
66. Van Essen D.C. A tension-based theory of morphogenesis and compact wiring in the central nervous system. Nature 1997, 385:313-318.
67. Van Hoesen G.W. Anatomy of the medial temporal lobe. Magn. Reson. Imaging 1995, 13:1047-1055.
68. Van Hoesen G.W., Solodkin A. Some modular features of temporal cortex in humans as revealed by pathological changes in Alzheimer's disease. Cereb. Cortex 1993, 3:465-475.
69. Van Hoesen G.W., Augustinack J.C., Dierking J., Redman S.J., Thangavel R. The parahippocampal gyrus in Alzheimer's disease. Clinical and preclinical neuroanatomical correlates. Ann. N. Y. Acad. Sci. 2000, 911:254-274.
70. Wachinger C. Structural image representation for image registration. Proceedings of IEEE Computer Vision and Pettern Recognition Workshops 2010, 23-30.
71. Wharton S., Bowtell R. Fiber orientation-dependent white matter contrast in gradient echo MRI. Proc. Natl. Acad. Sci. U. S. A. 2012, 109(45):18559-18564.