Resource polygon geometry predicts Bayesian stable isotope mixing model bias

Marine Ecology Progress Series

Volumn 514, Issue , 2014, Pages 1-12

  Brett, Michael T ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

Bayesian mixing models; MixSIR; SIAR; Stable isotopes; Trophic pathways

Indexed keywords

EID: 84908703032     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps11017     Document Type: Article

References (31)

1. Batt RD, Carpenter SR, Cole JJ, Pace ML, Cline TJ, Johnson RA, Seekell DA (2012) Resources supporting the food web of a naturally productive lake. Limnol Oceanogr 57: 1443-1452
2. Brett MT, Müller-Navarra DC, Ballantyne AP, Ravet JL, Goldman CR (2006) Daphnia fatty acid composition reflects that of their diet. Limnol Oceanogr 51: 2428-2437
3. Cloern JE, Canuel EA, Harris D (2002) Stable carbon and nitrogen isotope composition of aquatic and terrestrial plants of the San Francisco Bay estuarine system. Limnol Oceanogr 47: 713-729
4. Cremona F, Hamelin S, Planas D, Lucotte M (2009) Sources of organic matter and methylmercury in littoral macroinvertebrates: A stable isotope approach. Biogeochemistry 94: 81-94
5. Cummings BM, Schindler DE (2013) Depth variation in isotopic composition of benthic resources and assessment of sculpin feeding patterns in an oligotrophic Alaskan lake. Aquat Ecol 47: 403-414
6. Fry B (2013a) Alternative approaches for solving underdetermined isotope mixing problems. Mar Ecol Prog Ser 472: 1-13
7. Fry B (2013b) Minmax solutions for underdetermined isotope mixing problems: Reply to Semmens et al. (2013). Mar Ecol Prog Ser 490: 291-294
8. Galloway AWE, Britton-Simmons KH, Duggins DO, Gabrielson PW, Brett MT (2012) Fatty acid signatures differentiate marine macrophytes at ordinal and family ranks. J Phycol 48: 956-965
9. Galloway AWE, Eisenlord ME, Dethier MN, Holtgrieve G, Brett MT (2014a) Quantitative estimates of isopod resource utilization using a Bayesian fatty acid mixing model. Mar Ecol Prog Ser 507: 219-232
10. Galloway AWE, Taipale SJ, Hiltunen M, Peltomaa E, Strandberg U, Brett MT, Kankaala P (2014b) Diet-specific biomarkers show that high-quality phytoplankton fuels herbivorous zooplankton in large boreal lakes. Freshw Biol 59: 1902-1915
11. Hondula KL, PaceML (2014) Macroalgal support of cultured hard clams in a low nitrogen coastal lagoon. Mar Ecol Prog Ser 498: 187-201
12. Jackson AL, Inger R, Bearhop S, Parnell A (2009) Erroneous behaviour of MixSIR, a recently published Bayesian isotope mixing model: A discussion of Moore & Semmens (2008). Ecol Lett 12: E1-E5
13. Jensen H, Kiljunen M, Amundsen PA (2012) Dietary ontogeny and niche shift to piscivory in lacustrine brown trout Salmo trutta revealed by stomach content and stable isotope analyses. J Fish Biol 80: 2448-2462
14. Moore JW, Semmens BX (2008) Incorporating uncertainty and prior information into stable isotope mixing models. Ecol Lett 11: 470-480
15. Nosrati K, Govers G, Semmens BX, Ward EJ (2014) A mixing model to incorporate uncertainty in sediment fingerprinting. Geoderma 217-218: 173-180
16. Parnell AC, Inger R, Bearhop S, Jackson AL (2010) Source partitioning using stable isotopes: Coping with too much variation. PLoS ONE 5: E9672
17. Peterson BJ, Fry B (1987) Stable isotopes in ecosystem studies. Annu Rev Ecol Syst 18: 293-320
18. Phillips DL (2001) Mixing models in analyses of diet using multiple stable isotopes: A critique. Oecologia 127: 166-170
19. Phillips DL, Gregg JW (2001) Uncertainty in source partitioning using stable isotopes. Oecologia 127: 171-179
20. Phillips DL, Gregg JW (2003) Source partitioning using stable isotopes: Coping with too many sources. Oecologia 136: 261-269
21. Polis GA, Anderson WB, Holt RD (1997) Toward an integration of landscape and food web ecology: The dynamics of spatially subsidized food webs. Annu Rev Ecol Syst 28: 289-316
22. Ruokonen TJ, Kiljunen M, Karjalainen J, Hämäläinen H (2012) Invasive crayfish increase habitat connectivity: A case study in a large boreal lake. Knowl Manag Aquat Ecosyst 407: 08
23. Schwarcz HP (1991) Some theoretical aspects of isotope paleodiet studies. J Archaeol Sci 18: 261-275
24. Semmens BX, Ward EJ, Moore JW, Darimont CT (2009) Quantifying inter-And intra-population niche variability using hierarchical Bayesian stable isotope mixing models. PLoS ONE 4: E6187
25. Semmens BX, Ward EJ, Parnell AC, Phillips DL and others (2013) Statistical basis and outputs of stable isotope mixing models: Comment on Fry (2013). Mar Ecol Prog Ser 490: 285-289
26. Silva-Costa A, Bugoni L (2013) Feeding ecology of Kelp Gulls (Larus dominicanus) in marine and limnetic environments. Aquat Ecol 47: 211-224
27. Smith JA, Mazumder D, Suthers SM, Taylor MD (2013) To fit or not to fit: Evaluating stable isotope mixing models using simulated mixing polygons. Methods Ecol Evol 4: 612-618
28. Taipale S, Strandberg U, Peltomaa E, Galloway AWE, Ojala A, Brett MT (2013) Fatty acid composition as biomarkers of freshwater microalgae: Analysis of 37 strains of microalgae in 22 genera and in seven classes. Aquat Microb Ecol 71: 165-178
29. Ward EJ, Semmens BX, Schindler DE (2010) Including source uncertainty and prior information in the analysis of stable isotope mixing models. Environ Sci Technol 44: 4645-4650
30. Wootton JT (2012) River food web response to large-scale riparian zone manipulations. PLoS ONE 7: E51839
31. Xu J, Wen Z, Gong Z, Zhang M, Xie P, Hansson LA (2012) Seasonal trophic niche shift and cascading effect of a generalist predator fish. PLoS ONE 7: E49691