메뉴 건너뛰기




Volumn 3, Issue , 2014, Pages

KEGGscape: A Cytoscape app for pathway data integration

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER ANALYSIS; COMPUTER NETWORK; COMPUTER PROGRAM; CYTOSCAPE; DATA ANALYSIS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE MAPPING; GENETIC DATABASE; HUMAN COMPUTER INTERACTION; KEGGSCAPE;

EID: 84908659098     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.4524.1     Document Type: Article
Times cited : (62)

References (17)
  • 1
    • 84891760956 scopus 로고    scopus 로고
    • Data, information, knowledge and principle: back to metabolism in KEGG
    • 24214961, 3965122
    • Kanehisa M Goto S Sato Y: Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 2014;42(Database issue):D199-D205. 24214961 10.1093/nar/gkt1076 3965122
    • (2014) Nucleic Acids Res , vol.42 , Issue.DATABASE ISSUE , pp. D199-D205
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3
  • 2
    • 70450179911 scopus 로고    scopus 로고
    • Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API
    • 19907644, 2770834
    • Kono N Arakawa K R Ogawa: Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API. PLoS One. 2009;4(11):e7710. 19907644 10.1371/journal.pone.0007710 2770834
    • (2009) PLoS One , vol.4 , Issue.11 , pp. e7710
    • Kono, N.1    Arakawa, K.2    Ogawa, R.3
  • 3
    • 79959954965 scopus 로고    scopus 로고
    • ipath2.0: interactive pathway explorer
    • 21546551, 3125749
    • Yamada T Letunic I Okuda S: ipath2.0: interactive pathway explorer. Nucleic Acids Res. 2011;39(Web Server issue):W412-W415. 21546551 10.1093/nar/gkr313 3125749
    • (2011) Nucleic Acids Res , vol.39 , Issue.WEB SERVER ISSUE , pp. W412-W415
    • Yamada, T.1    Letunic, I.2    Okuda, S.3
  • 4
    • 84859057484 scopus 로고    scopus 로고
    • CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the model SEED
    • 22210867, 3307106
    • DeJongh M Bockstege B Frybarger P: CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the model SEED. Bioinformatics. 2012;28(6):891-892. 22210867 10.1093/bioinformatics/btr719 3307106
    • (2012) Bioinformatics , vol.28 , Issue.6 , pp. 891-892
    • DeJongh, M.1    Bockstege, B.2    Frybarger, P.3
  • 5
    • 79961195281 scopus 로고    scopus 로고
    • KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
    • 21700675, 3150042
    • Wrzodek C Dräger A Zell A: KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats. Bioinformatics. 2011;27(16):2314-2315. 21700675 10.1093/bioinformatics/btr377 3150042
    • (2011) Bioinformatics , vol.27 , Issue.16 , pp. 2314-2315
    • Wrzodek, C.1    Dräger, A.2    Zell, A.3
  • 6
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 14597658, 403769
    • Shannon P Markiel A Ozier O: Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498-2504. 14597658 10.1101/gr.1239303 403769
    • (2003) Genome Res , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3
  • 7
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • 21149340, 3031041
    • Smoot ME Ono K Ruscheinski J: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics. 2011;27(3):431-432. 21149340 10.1093/bioinformatics/btq675 3031041
    • (2011) Bioinformatics , vol.27 , Issue.3 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3
  • 8
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • 15972284
    • Maere S Heymans K Kuiper M: BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics. 2005;21(16):3448-3449. 15972284 10.1093/bioinformatics/bti551
    • (2005) Bioinformatics , vol.21 , Issue.16 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 9
    • 70350664654 scopus 로고    scopus 로고
    • Analyzing biological network parameters with CentiScaPe
    • 19729372, 2781755
    • Scardoni G Petterlini M Laudanna C: Analyzing biological network parameters with CentiScaPe. Bioinformatics. 2009;25(21):2857-2859. 19729372 10.1093/bioinformatics/btp517 2781755
    • (2009) Bioinformatics , vol.25 , Issue.21 , pp. 2857-2859
    • Scardoni, G.1    Petterlini, M.2    Laudanna, C.3
  • 10
    • 84868514445 scopus 로고    scopus 로고
    • VANTED v2: a framework for systems biology applications
    • 23140568, 3610154
    • Rohn H Junker A Hartmann A: VANTED v2: a framework for systems biology applications. BMC Syst Biol. 2012;6(1):139. 23140568 10.1186/1752-0509-6-139 3610154
    • (2012) BMC Syst Biol , vol.6 , Issue.1 , pp. 139
    • Rohn, H.1    Junker, A.2    Hartmann, A.3
  • 11
    • 84883576667 scopus 로고    scopus 로고
    • VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
    • 23716640, 3692070
    • Hu Z Chang YC Wang Y: VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res. 2013;41(Web Server issue):W225-W231. 23716640 10.1093/nar/gkt401 3692070
    • (2013) Nucleic Acids Res , vol.41 , Issue.WEB SERVER ISSUE , pp. W225-W231
    • Hu, Z.1    Chang, Y.C.2    Wang, Y.3
  • 12
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • 15461798, 545600
    • Gentleman RC Carey VJ Bates DM: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004;5(10):R80. 15461798 10.1186/gb-2004-5-10-r80 545600
    • (2004) Genome Biol , vol.5 , Issue.10 , pp. R80
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 13
    • 84915825354 scopus 로고    scopus 로고
    • ecoliLeucine
    • Reference Source,: Experimental data with Affymetrix E. coli chips. R package version 1.5.0.
    • Gautier L: ecoliLeucine: Experimental data with Affymetrix E. coli chips, 2007. R package version 1.5.0. Reference Source
    • (2007)
    • Gautier, L.1
  • 14
    • 1342288026 scopus 로고    scopus 로고
    • affy--analysis of Affymetrix GeneChip data at the probe level
    • 14960456
    • Gautier L Cope L Bolstad BM: affy--analysis of Affymetrix GeneChip data at the probe level. Bioinformatics. 2004;20(3):307-315. 14960456 10.1093/bioinformatics/btg405
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3
  • 15
    • 0037174983 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K12. The effects of Leucine-responsive regulatory protein
    • 12130640
    • Hung SP Baldi P Hatfield GW: Global gene expression profiling in Escherichia coli K12. The effects of Leucine-responsive regulatory protein. J Biol Chem. 2002;277(43):40309-40323. 12130640 10.1074/jbc.M204044200
    • (2002) J Biol Chem , vol.277 , Issue.43 , pp. 40309-40323
    • Hung, S.P.1    Baldi, P.2    Hatfield, G.W.3
  • 16
    • 72449150227 scopus 로고    scopus 로고
    • genefilter: methods for filtering genes from high-throughput experiments
    • Reference Source, . R package version 1.47.5.
    • Gentleman R Carey V Huber W: genefilter: methods for filtering genes from high-throughput experiments. R package version 1.47.5. Reference Source
    • Gentleman, R.1    Carey, V.2    Huber, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.