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Volumn 9, Issue 10, 2014, Pages

Rational design of small-molecule stabilizers of spermine synthase dimer by virtual screening and free energy-based approach

Author keywords

[No Author keywords available]

Indexed keywords

SPERMINE SYNTHASE; SPERMINE SYNTHASE INHIBITOR; TRANSFERASE INHIBITOR; UNCLASSIFIED DRUG; PROTEIN BINDING;

EID: 84908626312     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0110884     Document Type: Article
Times cited : (22)

References (83)
  • 1
    • 0347357617 scopus 로고    scopus 로고
    • Protein folding and misfolding
    • Dobson CM (2003) Protein folding and misfolding. Nature 426: 884-890.
    • (2003) Nature , vol.426 , pp. 884-890
    • Dobson, C.M.1
  • 2
    • 13444266370 scopus 로고    scopus 로고
    • Online mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders
    • Hamosh A, Scott AF, Amberger J.S., Bocchini CA, McKusick VA (2005) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 33: D514-517.
    • (2005) Nucleic Acids Res , vol.33 , pp. D514-517
    • Hamosh, A.1    Scott, A.F.2    Amberger, J.S.3    Bocchini, C.A.4    McKusick, V.A.5
  • 3
    • 35648999490 scopus 로고    scopus 로고
    • Mutation at the polymerase active site of mouse DNA polymerase delta increases genomic instability and accelerates tumorigenesis
    • Venkatesan RN, Treuting PM, Fuller E.D., Goldsby RE, Norwood TH, et al. (2007) Mutation at the polymerase active site of mouse DNA polymerase delta increases genomic instability and accelerates tumorigenesis. Mol Cell Biol 27: 7669-7682.
    • (2007) Mol Cell Biol , vol.27 , pp. 7669-7682
    • Venkatesan, R.N.1    Treuting, P.M.2    Fuller, E.D.3    Goldsby, R.E.4    Norwood, T.H.5
  • 4
    • 33750135978 scopus 로고    scopus 로고
    • Missense mutation in the N-acetylglucosamine-1-phosphotransferase gene (GNPTA) in a patient with mucolipidosis II induces changes in the size and cellular distribution of GNPTG
    • Tiede S, Cantz M, Spranger J., Braulke T (2006) Missense mutation in the N-acetylglucosamine-1-phosphotransferase gene (GNPTA) in a patient with mucolipidosis II induces changes in the size and cellular distribution of GNPTG. Hum Mutat 27: 830-831.
    • (2006) Hum Mutat , vol.27 , pp. 830-831
    • Tiede, S.1    Cantz, M.2    Spranger, J.3    Braulke, T.4
  • 5
    • 41949118839 scopus 로고    scopus 로고
    • Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions
    • Teng S, Michonova-Alexova E, Alexov E (2008) Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions. Curr Pharm Biotechnol 9: 123-133.
    • (2008) Curr Pharm Biotechnol , vol.9 , pp. 123-133
    • Teng, S.1    Michonova-Alexova, E.2    Alexov, E.3
  • 7
    • 0030447882 scopus 로고    scopus 로고
    • Inhibiting transthyretin amyloid fibril formation via protein stabilization
    • Miroy GJ, Lai Z, Lashuel H.A., Peterson SA, Strang C, et al. (1996) Inhibiting transthyretin amyloid fibril formation via protein stabilization. Proc Natl Acad Sci U S A 93: 15051-15056.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 15051-15056
    • Miroy, G.J.1    Lai, Z.2    Lashuel, H.A.3    Peterson, S.A.4    Strang, C.5
  • 8
    • 84885190937 scopus 로고    scopus 로고
    • The effects of non-synonymous single nucleotide polymorphisms (nsSNPs) on protein-protein interactions
    • Yates CM, Sternberg MJ (2013) The effects of non-synonymous single nucleotide polymorphisms (nsSNPs) on protein-protein interactions. J Mol Biol 425: 3949-3963.
    • (2013) J Mol Biol , vol.425 , pp. 3949-3963
    • Yates, C.M.1    Sternberg, M.J.2
  • 9
    • 84875216538 scopus 로고    scopus 로고
    • PrePPI: A structure-informed database of protein-protein interactions
    • Zhang QC, Petrey D, Garzon J.I., Deng L., Honig B (2013) PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res 41: D828-833.
    • (2013) Nucleic Acids Res , vol.41 , pp. D828-833
    • Zhang, Q.C.1    Petrey, D.2    Garzon, J.I.3    Deng, L.4    Honig, B.5
  • 10
    • 66149102833 scopus 로고    scopus 로고
    • Modeling effects of human single nucleotide polymorphisms on protein-protein interactions
    • Teng S, Madej T, Panchenko A., Alexov E (2009) Modeling effects of human single nucleotide polymorphisms on protein-protein interactions. Biophys J 96: 2178-2188.
    • (2009) Biophys J , vol.96 , pp. 2178-2188
    • Teng, S.1    Madej, T.2    Panchenko, A.3    Alexov, E.4
  • 11
    • 77956276773 scopus 로고    scopus 로고
    • Computational analysis of missense mutations causing snyder-robinson Syndrome
    • Zhang Z, Teng S, Wang L., Schwartz CE, Alexov E (2010) Computational analysis of missense mutations causing Snyder-Robinson syndrome. Hum Mutat 31: 1043-1049.
    • (2010) Hum Mutat , vol.31 , pp. 1043-1049
    • Zhang, Z.1    Teng, S.2    Wang, L.3    Schwartz, C.E.4    Alexov, E.5
  • 12
    • 79957582046 scopus 로고    scopus 로고
    • In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase
    • Zhang Z, Norris J, Schwartz C., Alexov E (2011) In silico and in vitro investigations of the mutability of disease-causing missense mutation sites in spermine synthase. PLoS One 6: e20373.
    • (2011) PLoS One , vol.6
    • Zhang, Z.1    Norris, J.2    Schwartz, C.3    Alexov, E.4
  • 13
    • 0032981698 scopus 로고    scopus 로고
    • Mutation analysis of the pip interaction domain reveals critical residues for protein-protein interactions
    • Ortiz MA, Light J, Maki R.A., Assa-Munt N (1999) Mutation analysis of the Pip interaction domain reveals critical residues for protein-protein interactions. Proc Natl Acad Sci U S A 96: 2740-2745.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 2740-2745
    • Ortiz, M.A.1    Light, J.2    Maki, R.A.3    Assa-Munt, N.4
  • 14
    • 35148825975 scopus 로고    scopus 로고
    • A CDKN2A mutation in familial melanoma that abrogates binding of p16INK4a to CDK4 but not CDK6
    • Jones R, Ruas M, Gregory F., Moulin S, Delia D, et al. (2007) A CDKN2A mutation in familial melanoma that abrogates binding of p16INK4a to CDK4 but not CDK6. Cancer Res 67: 9134-9141.
    • (2007) Cancer Res , vol.67 , pp. 9134-9141
    • Jones, R.1    Ruas, M.2    Gregory, F.3    Moulin, S.4    Delia, D.5
  • 15
    • 84894309512 scopus 로고    scopus 로고
    • Integrating structure to protein-protein interaction networks that drive metastasis to brain and lung in Breast cancer
    • Engin HB, Guney E, Keskin O., Oliva B, Gursoy A (2013) Integrating structure to protein-protein interaction networks that drive metastasis to brain and lung in breast cancer. PLoS One 8: e81035.
    • (2013) PLoS One , vol.8
    • Engin, H.B.1    Guney, E.2    Keskin, O.3    Oliva, B.4    Gursoy, A.5
  • 17
    • 84555190555 scopus 로고    scopus 로고
    • Targeting the proangiogenic VEGF-VEGFR protein-protein interface with drug-like compounds by in silico and in vitro screening
    • Gautier B, Miteva MA, Goncalves V, Huguenot F., Coric P, et al. (2011) Targeting the proangiogenic VEGF-VEGFR protein-protein interface with drug-like compounds by in silico and in vitro screening. Chem Biol 18: 1631-1639.
    • (2011) Chem Biol , vol.18 , pp. 1631-1639
    • Gautier, B.1    Miteva, M.A.2    Goncalves, V.3    Huguenot, F.4    Coric, P.5
  • 18
    • 79959306961 scopus 로고    scopus 로고
    • Tyrosine kinase syk non-enzymatic inhibitors and potential anti-allergic druglike compounds discovered by virtual and in vitro screening
    • Villoutreix BO, Laconde G, Lagorce D., Martineau P, Miteva MA, et al. (2011) Tyrosine kinase syk non-enzymatic inhibitors and potential anti-allergic druglike compounds discovered by virtual and in vitro screening. PLoS One 6: e21117.
    • (2011) PLoS One , vol.6
    • Villoutreix, B.O.1    Laconde, G.2    Lagorce, D.3    Martineau, P.4    Miteva, M.A.5
  • 20
    • 3142781225 scopus 로고    scopus 로고
    • Small-molecule inhibitors of protein-protein interactions: Progressing towards the dream
    • Arkin MR, Wells JA (2004) Small-molecule inhibitors of protein-protein interactions: progressing towards the dream. Nat Rev Drug Discov 3: 301-317.
    • (2004) Nat Rev Drug Discov , vol.3 , pp. 301-317
    • Arkin, M.R.1    Wells, J.A.2
  • 21
    • 37249004920 scopus 로고    scopus 로고
    • Reaching for high-hanging fruit in drug discovery at protein-protein interfaces
    • Wells JA, McClendon CL (2007) Reaching for high-hanging fruit in drug discovery at protein-protein interfaces. Nature 450: 1001-1009.
    • (2007) Nature , vol.450 , pp. 1001-1009
    • Wells, J.A.1    McClendon, C.L.2
  • 22
    • 70350444513 scopus 로고    scopus 로고
    • Protein-protein interactions: Making drug design second nature
    • Sackett DL, Sept D (2009) Protein-protein interactions: making drug design second nature. Nat Chem 1: 596-597.
    • (2009) Nat Chem , vol.1 , pp. 596-597
    • Sackett, D.L.1    Sept, D.2
  • 23
    • 84884587933 scopus 로고    scopus 로고
    • IPPI-DB: A manually curated and interactive database of small non-peptide inhibitors of protein-protein interactions
    • Labbe CM, Laconde G, Kuenemann M.A., Villoutreix BO, Sperandio O (2013) iPPI-DB: a manually curated and interactive database of small non-peptide inhibitors of protein-protein interactions. Drug Discov Today 18: 958-968.
    • (2013) Drug Discov Today , vol.18 , pp. 958-968
    • Labbe, C.M.1    Laconde, G.2    Kuenemann, M.A.3    Villoutreix, B.O.4    Sperandio, O.5
  • 24
    • 84876546810 scopus 로고    scopus 로고
    • 2P2Idb: A structural database dedicated to orthosteric modulation of protein-protein interactions
    • Basse MJ, Betzi S, Bourgeas R., Bouzidi S, Chetrit B, et al. (2013) 2P2Idb: a structural database dedicated to orthosteric modulation of protein-protein interactions. Nucleic Acids Res 41: D824-827.
    • (2013) Nucleic Acids Res , vol.41 , pp. D824-827
    • Basse, M.J.1    Betzi, S.2    Bourgeas, R.3    Bouzidi, S.4    Chetrit, B.5
  • 25
    • 14844361966 scopus 로고    scopus 로고
    • Small-molecule-mediated stabilization of familial amyotrophic lateral sclerosis-linked superoxide dismutase mutants against unfolding and aggregation
    • Ray SS, Nowak RJ, Brown RH Jr., Lansbury PT Jr. (2005) Small-molecule-mediated stabilization of familial amyotrophic lateral sclerosis-linked superoxide dismutase mutants against unfolding and aggregation. Proc Natl Acad Sci U S A 102: 3639-3644.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 3639-3644
    • Ray, S.S.1    Nowak, R.J.2    Brown, R.H.3    Lansbury, P.T.4
  • 26
    • 34247868131 scopus 로고    scopus 로고
    • Discovery of a novel small molecule binding site of human survivin
    • Wendt MD, Sun C, Kunzer A., Sauer D, Sarris K, et al. (2007) Discovery of a novel small molecule binding site of human survivin. Bioorg Med Chem Lett 17: 3122-3129.
    • (2007) Bioorg Med Chem Lett , vol.17 , pp. 3122-3129
    • Wendt, M.D.1    Sun, C.2    Kunzer, A.3    Sauer, D.4    Sarris, K.5
  • 27
    • 34249874926 scopus 로고    scopus 로고
    • Strategies to search and design stabilizers of protein-protein interactions: A feasibility study
    • Block P, Weskamp N, Wolf A., Klebe G (2007) Strategies to search and design stabilizers of protein-protein interactions: a feasibility study. Proteins 68: 170-186.
    • (2007) Proteins , vol.68 , pp. 170-186
    • Block, P.1    Weskamp, N.2    Wolf, A.3    Klebe, G.4
  • 28
    • 34547130929 scopus 로고    scopus 로고
    • Structure-based discovery of an inhibitor of arf activation by sec7 domains through targeting of protein-protein complexes
    • Viaud J, Zeghouf M, Barelli H., Zeeh JC, Padilla A, et al. (2007) Structure-based discovery of an inhibitor of Arf activation by Sec7 domains through targeting of protein-protein complexes. Proc Natl Acad Sci U S A 104: 10370-10375.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 10370-10375
    • Viaud, J.1    Zeghouf, M.2    Barelli, H.3    Zeeh, J.C.4    Padilla, A.5
  • 29
    • 84857509304 scopus 로고    scopus 로고
    • Small-molecule stabilization of proteinprotein interactions: An underestimated concept in drug discovery?
    • Thiel P, Kaiser M, Ottmann C (2012) Small-molecule stabilization of proteinprotein interactions: an underestimated concept in drug discovery? Angew Chem Int Ed Engl 51: 2012-2018.
    • (2012) Angew Chem Int Ed Engl , vol.51 , pp. 2012-2018
    • Thiel, P.1    Kaiser, M.2    Ottmann, C.3
  • 31
    • 75149134332 scopus 로고    scopus 로고
    • Toward the rational design of p53-stabilizing drugs: Probing the surface of the oncogenic Y220C mutant
    • Basse N, Kaar JL, Settanni G, Joerger A.C., Rutherford TJ, et al. (2010) Toward the rational design of p53-stabilizing drugs: probing the surface of the oncogenic Y220C mutant. Chem Biol 17: 46-56.
    • (2010) Chem Biol , vol.17 , pp. 46-56
    • Basse, N.1    Kaar, J.L.2    Settanni, G.3    Joerger, A.C.4    Rutherford, T.J.5
  • 32
    • 84866051945 scopus 로고    scopus 로고
    • Crystallographic study of novel transthyretin ligands exhibiting negative-cooperativity between two thyroxine binding sites
    • Tomar D, Khan T, Singh R.R., Mishra S., Gupta S, et al. (2012) Crystallographic study of novel transthyretin ligands exhibiting negative-cooperativity between two thyroxine binding sites. PLoS One 7: e43522.
    • (2012) PLoS One , vol.7
    • Tomar, D.1    Khan, T.2    Singh, R.R.3    Mishra, S.4    Gupta, S.5
  • 33
    • 30144433850 scopus 로고    scopus 로고
    • Locus-specific mutation databases: Pitfalls and good practice based on the p53 experience
    • Soussi T, Ishioka C, Claustres M., Beroud C (2006) Locus-specific mutation databases: pitfalls and good practice based on the p53 experience. Nat Rev Cancer 6: 83-90.
    • (2006) Nat Rev Cancer , vol.6 , pp. 83-90
    • Soussi, T.1    Ishioka, C.2    Claustres, M.3    Beroud, C.4
  • 34
    • 84857291408 scopus 로고    scopus 로고
    • Hot spots and transient pockets: Predicting the determinants of small-molecule binding to a protein-protein interface
    • Metz A, Pfleger C, Kopitz H., Pfeiffer-Marek S, Baringhaus KH, et al. (2012) Hot spots and transient pockets: predicting the determinants of small-molecule binding to a protein-protein interface. J Chem Inf Model 52: 120-133.
    • (2012) J Chem Inf Model , vol.52 , pp. 120-133
    • Metz, A.1    Pfleger, C.2    Kopitz, H.3    Pfeiffer-Marek, S.4    Baringhaus, K.H.5
  • 35
    • 34547918336 scopus 로고    scopus 로고
    • Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V
    • Segers K, Sperandio O, Sack M., Fischer R, Miteva MA, et al. (2007) Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V. Proc Natl Acad Sci U S A 104: 12697-12702.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12697-12702
    • Segers, K.1    Sperandio, O.2    Sack, M.3    Fischer, R.4    Miteva, M.A.5
  • 36
    • 84894447457 scopus 로고    scopus 로고
    • Rational design of small molecules targeting the C2 domain of coagulation factor VIII
    • Nicolaes GA, Kulharia M, Voorberg J., Kaijen PH, Wroblewska A, et al. (2014) Rational design of small molecules targeting the C2 domain of coagulation factor VIII. Blood 123: 113-120.
    • (2014) Blood , vol.123 , pp. 113-120
    • Nicolaes, G.A.1    Kulharia, M.2    Voorberg, J.3    Kaijen, P.H.4    Wroblewska, A.5
  • 37
    • 84871390611 scopus 로고    scopus 로고
    • The future of virtual compound screening
    • Heikamp K, Bajorath J (2013) The future of virtual compound screening. Chem Biol Drug Des 81: 33-40.
    • (2013) Chem Biol Drug Des , vol.81 , pp. 33-40
    • Heikamp, K.1    Bajorath, J.2
  • 38
    • 41949126415 scopus 로고    scopus 로고
    • In silico-in vitro screening of protein-protein interactions: Towards the next generation of therapeutics
    • Villoutreix BO, Bastard K, Sperandio O., Fahraeus R, Poyet JL, et al. (2008) In silico-in vitro screening of protein-protein interactions: towards the next generation of therapeutics. Curr Pharm Biotechnol 9: 103-122.
    • (2008) Curr Pharm Biotechnol , vol.9 , pp. 103-122
    • Villoutreix, B.O.1    Bastard, K.2    Sperandio, O.3    Fahraeus, R.4    Poyet, J.L.5
  • 39
    • 84886950237 scopus 로고    scopus 로고
    • One hundred thousand mouse clicks down the road: Selected online resources supporting drug discovery collected over a decade
    • Villoutreix BO, Lagorce D, Labbe C.M., Sperandio O., Miteva MA (2013) One hundred thousand mouse clicks down the road: selected online resources supporting drug discovery collected over a decade. Drug Discov Today 18: 1081-1089.
    • (2013) Drug Discov Today , vol.18 , pp. 1081-1089
    • Villoutreix, B.O.1    Lagorce, D.2    Labbe, C.M.3    Sperandio, O.4    Miteva, M.A.5
  • 40
    • 84883489537 scopus 로고    scopus 로고
    • Design, synthesis and biological studies of survivin dimerization modulators that prolong mitotic cycle
    • Chettiar SN, Cooley JV, Park I.H., Bhasin D., Chakravarti A, et al. (2013) Design, synthesis and biological studies of survivin dimerization modulators that prolong mitotic cycle. Bioorg Med Chem Lett 23: 5429-5433.
    • (2013) Bioorg Med Chem Lett , vol.23 , pp. 5429-5433
    • Chettiar, S.N.1    Cooley, J.V.2    Park, I.H.3    Bhasin, D.4    Chakravarti, A.5
  • 41
    • 0014607265 scopus 로고
    • Recessive sex-linked mental retardation in the absence of other recognizable Abnormalities. Report of a family
    • Snyder RD, Robinson A (1969) Recessive sex-linked mental retardation in the absence of other recognizable abnormalities. Report of a family. Clin Pediatr 8: 669-674.
    • (1969) Clin Pediatr , vol.8 , pp. 669-674
    • Snyder, R.D.1    Robinson, A.2
  • 42
    • 0348077408 scopus 로고    scopus 로고
    • X-linked spermine synthase gene (SMS) defect: The first polyamine deficiency Syndrome
    • Cason AL, Ikeguchi Y, Skinner C., Wood TC, Holden KR, et al. (2003) X-linked spermine synthase gene (SMS) defect: the first polyamine deficiency syndrome. Eur J Hum Genet 11: 937-944.
    • (2003) Eur J Hum Genet , vol.11 , pp. 937-944
    • Cason, A.L.1    Ikeguchi, Y.2    Skinner, C.3    Wood, T.C.4    Holden, K.R.5
  • 43
    • 50049128469 scopus 로고    scopus 로고
    • New SMS mutation leads to a striking reduction in spermine synthase protein function and a severe form of snyder-robinson X-linked recessive mental retardation Syndrome
    • de Alencastro G, McCloskey DE, Kliemann S.E., Maranduba CM, Pegg AE, et al. (2008) New SMS mutation leads to a striking reduction in spermine synthase protein function and a severe form of Snyder-Robinson X-linked recessive mental retardation syndrome. J Med Genet 45: 539-543.
    • (2008) J Med Genet , vol.45 , pp. 539-543
    • De Alencastro, G.1    McCloskey, D.E.2    Kliemann, S.E.3    Maranduba, C.M.4    Pegg, A.E.5
  • 44
    • 61749092136 scopus 로고    scopus 로고
    • A missense mutation, p.V132G, in the X-linked spermine synthase gene (SMS) causes snyder-robinson Syndrome
    • Becerra-Solano LE, Butler J, Castaneda-Cisneros G, McCloskey D.E., Wang X., et al. (2009) A missense mutation, p.V132G, in the X-linked spermine synthase gene (SMS) causes Snyder-Robinson syndrome. Am J Med Genet A 149A: 328-335.
    • (2009) Am J Med Genet A , vol.149 A , pp. 328-335
    • Becerra-Solano, L.E.1    Butler, J.2    Castaneda-Cisneros, G.3    McCloskey, D.E.4    Wang, X.5
  • 45
    • 47049102867 scopus 로고    scopus 로고
    • Crystal structure of human spermine synthase: Implications of substrate binding and catalytic mechanism
    • Wu H, Min J, Zeng H., McCloskey DE, Ikeguchi Y, et al. (2008) Crystal structure of human spermine synthase: implications of substrate binding and catalytic mechanism. J Biol Chem 283: 16135-16146.
    • (2008) J Biol Chem , vol.283 , pp. 16135-16146
    • Wu, H.1    Min, J.2    Zeng, H.3    McCloskey, D.E.4    Ikeguchi, Y.5
  • 46
    • 84882989863 scopus 로고    scopus 로고
    • A Y328C missense mutation in spermine synthase causes a mild form of snyder-robinson Syndrome
    • Zhang Z, Norris J, Kalscheuer V., Wood T, Wang L, et al. (2013) A Y328C missense mutation in spermine synthase causes a mild form of Snyder-Robinson syndrome. Hum Mol Genet 22: 3789-3797.
    • (2013) Hum Mol Genet , vol.22 , pp. 3789-3797
    • Zhang, Z.1    Norris, J.2    Kalscheuer, V.3    Wood, T.4    Wang, L.5
  • 47
    • 4944242891 scopus 로고    scopus 로고
    • Polyamines and cancer: Old molecules, new understanding
    • Gerner EW, Meyskens FL Jr. (2004) Polyamines and cancer: old molecules, new understanding. Nat Rev Cancer 4: 781-792.
    • (2004) Nat Rev Cancer , vol.4 , pp. 781-792
    • Gerner, E.W.1    Meyskens, F.L.2
  • 48
    • 32944472945 scopus 로고    scopus 로고
    • Aminopropyltransferases: Function, structure and genetics
    • Ikeguchi Y, Bewley MC, Pegg AE (2006) Aminopropyltransferases: function, structure and genetics. J Biochem 139: 1-9.
    • (2006) J Biochem , vol.139 , pp. 1-9
    • Ikeguchi, Y.1    Bewley, M.C.2    Pegg, A.E.3
  • 49
    • 70350780368 scopus 로고    scopus 로고
    • Mammalian polyamine metabolism and function
    • Pegg AE (2009) Mammalian polyamine metabolism and function. IUBMB Life 61: 880-894.
    • (2009) IUBMB Life , vol.61 , pp. 880-894
    • Pegg, A.E.1
  • 50
    • 77949905958 scopus 로고    scopus 로고
    • The polyamine metabolism genes ornithine decarboxylase and antizyme 2 predict aggressive behavior in neuroblastomas with and without MYCN amplification
    • Geerts D, Koster J, Albert D., Koomoa DL, Feith DJ, et al. (2010) The polyamine metabolism genes ornithine decarboxylase and antizyme 2 predict aggressive behavior in neuroblastomas with and without MYCN amplification. Int J Cancer 126: 2012-2024.
    • (2010) Int J Cancer , vol.126 , pp. 2012-2024
    • Geerts, D.1    Koster, J.2    Albert, D.3    Koomoa, D.L.4    Feith, D.J.5
  • 51
    • 84882771490 scopus 로고    scopus 로고
    • A rational free energy-based approach to understanding and targeting disease-causing missense mutations
    • Zhang Z, Witham S, Petukh M., Moroy G, Miteva M, et al. (2013) A rational free energy-based approach to understanding and targeting disease-causing missense mutations. J Am Med Inform Assoc.
    • (2013) J Am Med Inform Assoc.
    • Zhang, Z.1    Witham, S.2    Petukh, M.3    Moroy, G.4    Miteva, M.5
  • 52
    • 84883622106 scopus 로고    scopus 로고
    • In silico mechanistic profiling to probe small molecule binding to sulfotransferases
    • Martiny VY, Carbonell P, Lagorce D., Villoutreix BO, Moroy G, et al. (2013) In silico mechanistic profiling to probe small molecule binding to sulfotransferases. PLoS One 8: e73587.
    • (2013) PLoS One , vol.8
    • Martiny, V.Y.1    Carbonell, P.2    Lagorce, D.3    Villoutreix, B.O.4    Moroy, G.5
  • 54
    • 84884657202 scopus 로고    scopus 로고
    • Current progress in structure-based rational drug design marks a new mindset in drug discovery
    • Lounnas V, Ritschel T, Kelder J., McGuire R, Bywater RP, et al. (2013) Current progress in Structure-Based Rational Drug Design marks a new mindset in drug discovery. Comput Struct Biotech J 5: e201302011.
    • (2013) Comput Struct Biotech J , vol.5
    • Lounnas, V.1    Ritschel, T.2    Kelder, J.3    McGuire, R.4    Bywater, R.P.5
  • 55
    • 84897010735 scopus 로고    scopus 로고
    • Does a more precise chemical description of protein-ligand complexes lead to more accurate prediction of binding affinity?
    • Ballester PJ, Schreyer A, Blundell TL (2014) Does a more precise chemical description of protein-ligand complexes lead to more accurate prediction of binding affinity? J Chem Inf Model 54: 944-955.
    • (2014) J Chem Inf Model , vol.54 , pp. 944-955
    • Ballester, P.J.1    Schreyer, A.2    Blundell, T.L.3
  • 58
    • 84875984520 scopus 로고    scopus 로고
    • Druggable protein interaction sites are more predisposed to surface pocket formation than the rest of the protein surface
    • Johnson DK, Karanicolas J (2013) Druggable protein interaction sites are more predisposed to surface pocket formation than the rest of the protein surface. PLoS Comput Biol 9: e1002951.
    • (2013) PLoS Comput Biol , vol.9
    • Johnson, D.K.1    Karanicolas, J.2
  • 59
    • 0037666888 scopus 로고    scopus 로고
    • Implications of protein flexibility for drug discovery
    • Teague SJ (2003) Implications of protein flexibility for drug discovery. Nat Rev Drug Discov 2: 527-541.
    • (2003) Nat Rev Drug Discov , vol.2 , pp. 527-541
    • Teague, S.J.1
  • 60
    • 33947662384 scopus 로고    scopus 로고
    • Protein flexibility and species specificity in structure-based drug discovery: Dihydrofolate reductase as a test system
    • Bowman AL, Lerner MG, Carlson HA (2007) Protein flexibility and species specificity in structure-based drug discovery: dihydrofolate reductase as a test system. J Am Chem Soc 129: 3634-3640.
    • (2007) J Am Chem Soc , vol.129 , pp. 3634-3640
    • Bowman, A.L.1    Lerner, M.G.2    Carlson, H.A.3
  • 61
    • 77955627131 scopus 로고    scopus 로고
    • How to choose relevant multiple receptor conformations for virtual screening: A test case of cdk2 and normal mode analysis
    • Sperandio O, Mouawad L, Pinto E., Villoutreix BO, Perahia D, et al. (2010) How to choose relevant multiple receptor conformations for virtual screening: a test case of Cdk2 and normal mode analysis. Eur Biophys J 39: 1365-1372.
    • (2010) Eur Biophys J , vol.39 , pp. 1365-1372
    • Sperandio, O.1    Mouawad, L.2    Pinto, E.3    Villoutreix, B.O.4    Perahia, D.5
  • 62
    • 84877933286 scopus 로고    scopus 로고
    • Protein-ligand docking in the new millennium - A retrospective of 10 years in the field
    • Sousa SF, Ribeiro AJ, Coimbra J.T., Neves RP, Martins SA, et al. (2013) Protein-ligand docking in the new millennium-a retrospective of 10 years in the field. Curr Med Chem 20: 2296-2314.
    • (2013) Curr Med Chem , vol.20 , pp. 2296-2314
    • Sousa, S.F.1    Ribeiro, A.J.2    Coimbra, J.T.3    Neves, R.P.4    Martins, S.A.5
  • 63
    • 84855438940 scopus 로고    scopus 로고
    • Discrete molecular dynamics distinguishes nativelike binding poses from decoys in difficult targets
    • Proctor EA, Yin S, Tropsha A., Dokholyan NV (2012) Discrete molecular dynamics distinguishes nativelike binding poses from decoys in difficult targets. Biophys J 102: 144-151.
    • (2012) Biophys J , vol.102 , pp. 144-151
    • Proctor, E.A.1    Yin, S.2    Tropsha, A.3    Dokholyan, N.V.4
  • 65
    • 0035838974 scopus 로고    scopus 로고
    • Extending the accuracy limits of prediction for side-chain conformations
    • Xiang Z, Honig B (2001) Extending the accuracy limits of prediction for side-chain conformations. J Mol Biol 311: 421-430.
    • (2001) J Mol Biol , vol.311 , pp. 421-430
    • Xiang, Z.1    Honig, B.2
  • 66
    • 0033614791 scopus 로고    scopus 로고
    • Calculated protein and proton motions coupled to electron transfer: Electron transfer from QA- to QB in bacterial photosyn-thetic reaction centers
    • Alexov E, Gunner M (1999) Calculated Protein and Proton Motions Coupled to Electron Transfer: Electron Transfer from QA- to QB in Bacterial Photosyn-thetic Reaction Centers. Biochemistry 38: 8253-8270.
    • (1999) Biochemistry , vol.38 , pp. 8253-8270
    • Alexov, E.1    Gunner, M.2
  • 67
    • 0036787760 scopus 로고    scopus 로고
    • Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins
    • Georgescu RE, Alexov EG, Gunner MR (2002) Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins. Biophys J 83: 1731-1748.
    • (2002) Biophys J , vol.83 , pp. 1731-1748
    • Georgescu, R.E.1    Alexov, E.G.2    Gunner, M.R.3
  • 68
    • 62749167980 scopus 로고    scopus 로고
    • MCCE2: Improving protein pKa calculations with extensive side chain rotamer sampling
    • Song Y, Mao J, Gunner MR (2009) MCCE2: Improving Protein pKa Calculations with Extensive Side Chain Rotamer Sampling. Comp Chem 30: 2231-2247.
    • (2009) Comp Chem , vol.30 , pp. 2231-2247
    • Song, Y.1    Mao, J.2    Gunner, M.R.3
  • 70
    • 40549111613 scopus 로고    scopus 로고
    • FACTS: Fast analytical continuum treatment of solvation
    • Haberthur U, Caflisch A (2008) FACTS: Fast analytical continuum treatment of solvation. J Comput Chem 29: 701-715.
    • (2008) J Comput Chem , vol.29 , pp. 701-715
    • Haberthur, U.1    Caflisch, A.2
  • 71
    • 34247343346 scopus 로고    scopus 로고
    • Surflex-dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search
    • Jain AN (2007) Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search. J Comput Aided Mol Des 21: 281-306.
    • (2007) J Comput Aided Mol Des , vol.21 , pp. 281-306
    • Jain, A.N.1
  • 72
    • 84857531280 scopus 로고    scopus 로고
    • Combining global and local measures for structure-based druggability predictions
    • Volkamer A, Kuhn D, Grombacher T., Rippmann F, Rarey M (2012) Combining global and local measures for structure-based druggability predictions. J Chem Inf Model 52: 360-372.
    • (2012) J Chem Inf Model , vol.52 , pp. 360-372
    • Volkamer, A.1    Kuhn, D.2    Grombacher, T.3    Rippmann, F.4    Rarey, M.5
  • 73
    • 79960111434 scopus 로고    scopus 로고
    • The FAF-drugs2 server: A multi-step engine to prepare electronic chemical compound collections
    • Lagorce D, Maupetit J, Baell J., Sperandio O, Tuffery P, et al. (2011) The FAF-Drugs2 server: a multi-step engine to prepare electronic chemical compound collections. Bioinformatics.
    • (2011) Bioinformatics
    • Lagorce, D.1    Maupetit, J.2    Baell, J.3    Sperandio, O.4    Tuffery, P.5
  • 74
    • 84866375308 scopus 로고    scopus 로고
    • Toward the design of drugs on protein-protein interactions
    • Sperandio O (2012) Toward the design of drugs on Protein-Protein Interactions. Curr Pharm Des.
    • (2012) Curr Pharm Des.
    • Sperandio, O.1
  • 75
    • 79958143460 scopus 로고    scopus 로고
    • Modulators of proteinprotein interactions: Novel approaches in targeting protein kinases and other pharmaceutically relevant biomolecules
    • Rechfeld F, Gruber P, Hofmann J., Kirchmair J (2011) Modulators of proteinprotein interactions: novel approaches in targeting protein kinases and other pharmaceutically relevant biomolecules. Curr Top Med Chem 11: 1305-1319.
    • (2011) Curr Top Med Chem , vol.11 , pp. 1305-1319
    • Rechfeld, F.1    Gruber, P.2    Hofmann, J.3    Kirchmair, J.4
  • 76
    • 79960990847 scopus 로고    scopus 로고
    • Chemical and structural lessons from recent successes in protein-protein interaction inhibition (2P2I)
    • Morelli X, Bourgeas R, Roche P (2011) Chemical and structural lessons from recent successes in protein-protein interaction inhibition (2P2I). Curr Opin Chem Biol 15: 475-481.
    • (2011) Curr Opin Chem Biol , vol.15 , pp. 475-481
    • Morelli, X.1    Bourgeas, R.2    Roche, P.3
  • 77
    • 0035289779 scopus 로고    scopus 로고
    • Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings
    • Lipinski CA, Lombardo F, Dominy B.W., Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46: 3-26.
    • (2001) Adv Drug Deliv Rev , vol.46 , pp. 3-26
    • Lipinski, C.A.1    Lombardo, F.2    Dominy, B.W.3    Feeney, P.J.4
  • 78
    • 76149120388 scopus 로고    scopus 로고
    • AutoDock vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
    • Trott O, Olson AJ (2010) AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. Journal of Computational Chemistry 31: 455-461.
    • (2010) Journal of Computational Chemistry , vol.31 , pp. 455-461
    • Trott, O.1    Olson, A.J.2
  • 79
    • 70349932423 scopus 로고    scopus 로고
    • AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
    • Morris GM, Huey R, Lindstrom W., Sanner MF, Belew RK, et al. (2009) AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem 30: 2785-2791.
    • (2009) J Comput Chem , vol.30 , pp. 2785-2791
    • Morris, G.M.1    Huey, R.2    Lindstrom, W.3    Sanner, M.F.4    Belew, R.K.5
  • 80
    • 79958841703 scopus 로고    scopus 로고
    • SwissParam: A fast force field generation tool for small organic molecules
    • Zoete V, Cuendet MA, Grosdidier A, Michielin O (2011) SwissParam: a fast force field generation tool for small organic molecules. J Comput Chem 32: 2359-2368.
    • (2011) J Comput Chem , vol.32 , pp. 2359-2368
    • Zoete, V.1    Cuendet, M.A.2    Grosdidier, A.3    Michielin, O.4
  • 81
    • 0042569018 scopus 로고    scopus 로고
    • Effect of spermine synthase on the sensitivity of cells to anti-tumour agents
    • Ikeguchi Y, Mackintosh CA, McCloskey D.E., Pegg AE (2003) Effect of spermine synthase on the sensitivity of cells to anti-tumour agents. Biochem J 373: 885-892.
    • (2003) Biochem J , vol.373 , pp. 885-892
    • Ikeguchi, Y.1    Mackintosh, C.A.2    McCloskey, D.E.3    Pegg, A.E.4
  • 82
    • 84864813176 scopus 로고    scopus 로고
    • Determination of cellular aminopropyltransferase activity using precolumn fluorescent etheno-derivatization with high-performance liquid chromatogra-phy
    • Yamazaki K, Ikeguchi Y, Niwa T., Hayashi K, Iwaki T, et al. (2012) Determination of cellular aminopropyltransferase activity using precolumn fluorescent etheno-derivatization with high-performance liquid chromatogra-phy. Anal Sci 28: 621-624.
    • (2012) Anal Sci , vol.28 , pp. 621-624
    • Yamazaki, K.1    Ikeguchi, Y.2    Niwa, T.3    Hayashi, K.4    Iwaki, T.5
  • 83
    • 0027264131 scopus 로고
    • Effects of inhibitors of spermidine synthase and spermine synthase on polyamine synthesis in rat tissues
    • Shirahata A, Takahashi N, Beppu T., Hosoda H, Samejima K (1993) Effects of inhibitors of spermidine synthase and spermine synthase on polyamine synthesis in rat tissues. Biochem Pharmacol 45: 1897-1903.
    • (1993) Biochem Pharmacol , vol.45 , pp. 1897-1903
    • Shirahata, A.1    Takahashi, N.2    Beppu, T.3    Hosoda, H.4    Samejima, K.5


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