Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data

2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2014

Volumn , Issue , 2014, Pages

  Skums, Pavel ^a   Artyomenko, Alexander ^b   Glebova, Olga ^b   Zelikovsky, Alex ^b   Campo, David S ^a   Dimitrova, Zoya ^a   Khudyakov, Yury ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b GEORGIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BASED CLUSTERING; GENERAL TOOLS; GENETIC RELATEDNESS; HIGHLY SENSITIVE DETECTIONS; NEXT-GENERATION SEQUENCING;

EID: 84908587422     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICCABS.2014.6863938     Document Type: Conference Paper

References (4)

1. Fischer GE, Schaefer MK, Labus BJ, et al. Hepatitis C virus infections from unsafe injection practices at an endoscopy clinic in Las Vegas, Nevada, 2007-2008. Clin Infect Dis 2010; 51:267-73.
2. Wertheim J, Leigh Brown A, Hepler N, Mehta S, Richman D, et al., The Global Transmission Network of HIV-1, J Infect Dis. (2014) 209 (2): 304-313
3. Skums P, Glebova O, Zelikovsky A, Mandoiu I, Khudyakov Y, Opti-mizing pooling strategies for the massive next-generation sequencing of viral samples, Computational Advances in Bio and Medical Sciences (ICCABS), 2013 IEEE 3rd International Conference 12-14 June 2013, doi: 10.1109/ICCABS.2013.6629230
4. Artyomenko A, Mancuso, N, Zelikovsky A, et al., kGEM: An EM-based algorithm for local reconstruction of viral quasispecies, Com-putational Advances in Bio and Medical Sciences (ICCABS), 2013 IEEE 3rd International Conference, 12-14 June 2013, doi: 10.1109/IC-CABS.2013.6629226