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Volumn 9, Issue 10, 2014, Pages

Anatomical entity recognition with a hierarchical framework augmented by external resources

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANATOMICAL CONCEPTS; ARTICLE; BOOK; HIERARCHICAL FRAMEWORK; INFORMATION PROCESSING; KNOWLEDGE BASE; MEDICAL RECORD; MEDICAL TERMINOLOGY; PRACTICE GUIDELINE; ALGORITHM; ANATOMY; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; CONTROLLED VOCABULARY; HUMAN; NATURAL LANGUAGE PROCESSING; SEMANTICS;

EID: 84908428859     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0108396     Document Type: Article
Times cited : (11)

References (41)
  • 1
    • 0030483615 scopus 로고    scopus 로고
    • Natural language processing in medicine: An overview
    • Spyns P (1996) Natural Language Processing in Medicine: An Overview. Methods Inf Med 35: 285-301.
    • (1996) Methods Inf Med , vol.35 , pp. 285-301
    • Spyns, P.1
  • 2
    • 4544280638 scopus 로고    scopus 로고
    • Automated encoding of clinical documents based in natural language processing
    • Friedman C, Shagina L, Lussier Y, Hripcsak G (2004) Automated Encoding of Clinical Documents Based in Natural Language Processing. J Am Med Inform Assoc 11:392-402.
    • (2004) J Am Med Inform Assoc , vol.11 , pp. 392-402
    • Friedman, C.1    Shagina, L.2    Lussier, Y.3    Hripcsak, G.4
  • 3
    • 39049190745 scopus 로고    scopus 로고
    • Comparing natural language processing tools to extract medical problems from narrative text
    • Meystre SM, Haug PJ (2005) Comparing Natural Language Processing Tools to Extract Medical Problems from Narrative Text. AMIA Annu Symp Proc: 525-9.
    • (2005) AMIA Annu Symp Proc , pp. 525-529
    • Meystre, S.M.1    Haug, P.J.2
  • 4
    • 33750722813 scopus 로고    scopus 로고
    • Natural language processing to extract medical problems from electronic clinical documents: Performance evaluation
    • Meystre SM, Haug PJ (2006) Natural Language Processing to Extract Medical Problems from Electronic Clinical Documents: Performance Evaluation. J Biomed Inform 39(6):589-99.
    • (2006) J Biomed Inform , vol.39 , Issue.6 , pp. 589-599
    • Meystre, S.M.1    Haug, P.J.2
  • 6
    • 84897901954 scopus 로고    scopus 로고
    • Anatomical entity mention recognition at literature scale
    • Pyysalo S, Ananiadou S (2014) Anatomical Entity Mention Recognition at Literature Scale. Bioinformatics 30(6):868-875.
    • (2014) Bioinformatics , vol.30 , Issue.6 , pp. 868-875
    • Pyysalo, S.1    Ananiadou, S.2
  • 7
    • 80053292637 scopus 로고    scopus 로고
    • 2010 I2b2/va challenge on concepts, assertions, and relations in clinical text
    • Uzuner O, South BR, Shen S, DuVall SL (2011) 2010 i2b2/VA Challenge on Concepts, Assertions, and Relations in Clinical Text. J Am Med Inform Assoc 18:552-556.
    • (2011) J Am Med Inform Assoc , vol.18 , pp. 552-556
    • Uzuner, O.1    South, B.R.2    Shen, S.3    DuVall, S.L.4
  • 8
    • 84908421884 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • CRF + +. Available: http://crfpp.googlecode.com/svn/trunk/doc/index.html. Accessed 2014 Sep 3.
    • CRF + +1
  • 11
    • 84908421881 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • UMLS Knowledge Base. Available: http://www.nlm.nih.gov/research/umls. Accessed 2014 Sep 3.
    • UMLS Knowledge Base1
  • 12
    • 84908421880 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Mesh Knowledge Base. Available: http://www.ncbi.nlm.nih.gov/mesh. Accessed 2014 Sep 3.
    • Mesh Knowledge Base1
  • 13
    • 84908421879 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • RadLex Knowledge Base. Available: http://www.radlex.org/. Accessed 2014 Sep 3.
    • RadLex Knowledge Base1
  • 14
    • 84908421878 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • BodyParts3D Knowledge Base. Available: http://lifesciencedb.jp/bp3d/ ?lng=en. Accessed 2014 Sep 3.
    • BodyParts3D Knowledge Base1
  • 15
    • 0041627757 scopus 로고    scopus 로고
    • A simple algorithm for identifying abbreviation definitions in biomedical text
    • Schwartz AS, Hearst MA (2003) A Simple Algorithm for Identifying Abbreviation Definitions in Biomedical Text. Pacific Symposium on Biocomputing 8:451-462.
    • (2003) Pacific Symposium on Biocomputing , vol.8 , pp. 451-462
    • Schwartz, A.S.1    Hearst, M.A.2
  • 16
    • 0028955263 scopus 로고
    • Unlocking clinical data from narrative reports: A study of natural language processing
    • Hripcsak G, Friedman C, Alderson PO, DuMouchel W, Johnson SB, et al. (1995) Unlocking Clinical Data from Narrative Reports: A Study of Natural Language Processing. Ann Intern Med 122:681-8.
    • (1995) Ann Intern Med , vol.122 , pp. 681-688
    • Hripcsak, G.1    Friedman, C.2    Alderson, P.O.3    DuMouchel, W.4    Johnson, S.B.5
  • 18
    • 4544280638 scopus 로고    scopus 로고
    • Automated encoding of clinical documents based on natural language processing
    • Friedman C, Shagina L, Lussier Y, Hripcsak G (2004) Automated Encoding of Clinical Documents Based on Natural Language Processing. J Am Med Inform Assoc 11:392-402.
    • (2004) J Am Med Inform Assoc , vol.11 , pp. 392-402
    • Friedman, C.1    Shagina, L.2    Lussier, Y.3    Hripcsak, G.4
  • 19
    • 0036082141 scopus 로고    scopus 로고
    • Use of natural language processing to translate clinical information from a database of 889,921 chest radiographic reports
    • Hripcsak G, Austin JH, Alderson PO, Friedman C (2002) Use of Natural Language Processing to Translate Clinical Information from a Database of 889,921 Chest Radiographic Reports. Radiology 224:157-63.
    • (2002) Radiology , vol.224 , pp. 157-163
    • Hripcsak, G.1    Austin, J.H.2    Alderson, P.O.3    Friedman, C.4
  • 20
    • 84908421877 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • The Third i2b2 challenge. Available: https://www.i2b2.org/NLP/Medication/. Accessed 2014 Sep 3.
    • The Third i2b2 challenge
  • 21
    • 84908400017 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • The Fourth i2b2/VA challenge. Available: https://www.i2b2.org/NLP/ Relations/. Accessed 2014 Sep 3.
    • The Fourth i2b2/VA challenge
  • 23
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: The foundational model of anatomy
    • Rosse C, Mejino JL (2003) A Reference Ontology for Biomedical Informatics: The Foundational Model of Anatomy. Journal of Biomedical Informatics 36:478-500.
    • (2003) Journal of Biomedical Informatics , vol.36 , pp. 478-500
    • Rosse, C.1    Mejino, J.L.2
  • 26
    • 84908464360 scopus 로고    scopus 로고
    • An exploration of mining gene expression mentions and their anatomical locations from medical text
    • Martin G, Goran N, Casey MB (2010) An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Medical Text. BioNLP: 72-80.
    • (2010) BioNLP , pp. 72-80
    • Martin, G.1    Goran, N.2    Casey, M.B.3
  • 27
    • 80053437050 scopus 로고    scopus 로고
    • Organismtagger: Detection, normalization and grounding of organism entities in biomedical documents
    • Naderi N, Kappler T, Baker CJ, Witte R (2011) OrganismTagger: Detection, Normalization and Grounding of Organism Entities in Biomedical Documents. Bioinformatics 27(19):2721-9.
    • (2011) Bioinformatics , vol.27 , Issue.19 , pp. 2721-2729
    • Naderi, N.1    Kappler, T.2    Baker, C.J.3    Witte, R.4
  • 30
    • 80053268344 scopus 로고    scopus 로고
    • Automatic extraction of relations between medical concepts in clinical texts
    • Rink B, Harabagie S, Roberts K (2011) Automatic Extraction of Relations between Medical Concepts in Clinical Texts. J Am Med Inform Assoc 18:594-600.
    • (2011) J Am Med Inform Assoc , vol.18 , pp. 594-600
    • Rink, B.1    Harabagie, S.2    Roberts, K.3
  • 31
    • 84872225986 scopus 로고    scopus 로고
    • A classification approach to coreference in discharge summaries: 2011 i2b2 challenge
    • Yan X, Jiahua L, Jiajun W, Yue W, Zhuowen T, et al. (2012) A Classification Approach to Coreference in Discharge Summaries: 2011 i2b2 challenge. J Am Med Inform Assoc 19:897-905.
    • (2012) J Am Med Inform Assoc , vol.19 , pp. 897-905
    • Yan, X.1    Jiahua, L.2    Jiajun, W.3    Yue, W.4    Zhuowen, T.5
  • 32
    • 84908462937 scopus 로고    scopus 로고
    • Suicide note sentiment classification: A supervised approach augmented by web data
    • Yan X, Yue W, Jiahua L, Zhuowen T, Jian-Tao S, et al. (2012) Suicide Note Sentiment Classification: A Supervised Approach Augmented by Web Data. Biomed Inform Insights 5:31-41.
    • (2012) Biomed Inform Insights , vol.5 , pp. 31-41
    • Yan, X.1    Yue, W.2    Jiahua, L.3    Zhuowen, T.4    Jian-Tao, S.5
  • 33
    • 84908421873 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Wikipedia. Available: http://www.wikipedia.org/. Accessed 2014 Sep 3.
    • Wikipedia1
  • 34
    • 84908421872 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • WordNet. Available: http://wordnet.princeton.edu/. Accessed 2014 Sep 3.
    • WordNet1
  • 35
    • 84908453674 scopus 로고    scopus 로고
    • Beijing, China: Higher Education Press
    • Zuo MX (2009) Human Anatomy and Physiology. Beijing, China: Higher Education Press. 11 p.
    • (2009) Human Anatomy and Physiology. , pp. 11
    • Zuo, M.X.1
  • 36
    • 84937275232 scopus 로고    scopus 로고
    • Agreement on classification tasks: The kappa statistics
    • Carletta J (1996) Agreement on Classification Tasks: The Kappa Statistics. Computational Linguistics 22:249-254.
    • (1996) Computational Linguistics , vol.22 , pp. 249-254
    • Carletta, J.1
  • 37
    • 84908421871 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Enju Paser. Available: http://www.nactem.ac.uk/tsujii/enju/. Accessed 2014 Sep 3.
    • Enju Paser1
  • 38
    • 84908421870 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Stanford Parser. Available: http://www-nlp.stanford.edu/software/lex-parser. shtml. Accessed 2014 Sep 3.
    • Stanford Parser1
  • 40
    • 84908421869 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Freebase. Available: http://www.freebase.com/. Accessed 2014 Sep 3.
    • Freebase1
  • 41
    • 84908421868 scopus 로고    scopus 로고
    • Accessed 2014 Sep 3
    • Yago. Available: http://www.mpi-inf.mpg.de/departments/databases-and-information- systems/research/yago-naga/yago/. Accessed 2014 Sep 3.
    • Yago1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.