Global distribution of malaria-resistant MHC-HLA alleles: The number and frequencies of alleles and malaria risk

Malaria Journal

Volumn 13, Issue 1, 2014, Pages

  Garamszegi, László Zsolt ^a  

^a DEPARTMENT OF CONSERVATION BIOLOGY   (Spain)

Author keywords

Host parasite interaction; Major histocompatibility complex; Malaria; Parasite transmission; Vector borne infectious diseases

Indexed keywords

LEUKOCYTE ANTIGEN; HLA ANTIGEN;

ARTICLE; GENE FREQUENCY; GENE LOCUS; GENE SEQUENCE; GENETIC RISK; HLA SYSTEM; HOST PARASITE INTERACTION; HUMAN; INFECTION RISK; MAJOR HISTOCOMPATIBILITY COMPLEX; MALARIA; META ANALYSIS; PHYLOGENY; DISEASE RESISTANCE; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; IMMUNOLOGY; PHYLOGEOGRAPHY;

DISEASE RESISTANCE; GENE FREQUENCY; GENETIC VARIATION; HLA ANTIGENS; HUMANS; MALARIA; PHYLOGEOGRAPHY; SELECTION, GENETIC;

EID: 84908396013     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/1475-2875-13-349     Document Type: Article

References (49)

1. The global distribution of clinical episodes of Plasmodium falciparum malaria. Snow RW, Guerra CA, Noor AM, Myint HY, Hay SI, Nature 2005 434 214 217 10.1038/nature03342 15759000
2. The economic and social burden of malaria. Sachs J, Malaney P, Nature 2002 415 680 685 10.1038/415680a 11832956
3. MalAvi: a public database of malaria parasites and related haemosporidians in avian hosts based on mitochondrial cytochrome b lineages. Bensch S, Hellgren O, Pérez-Tris J, Mol Ecol Resour 2009 9 1353 1358 10.1111/j.1755-0998.2009.02692.x 21564906
4. A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches. Martinsen ES, Perkins SL, Schall JJ, Mol Phylogenet Evol 2008 47 261 273 10.1016/j.ympev.2007.11.012 18248741
5. World Health Organization, World Malaria Report Geneva: WHO Press 2011
6. The evolution of virulence and host specialization in malaria parasites of primates. Garamszegi LZ, Ecol Lett 2006 9 933 940 10.1111/j.1461-0248.2006.00936.x 16913936
7. Valkiu¯nas G, Avian Malaria Parasites and Other Haemosporidia Boca Raton: CRC Press 2005
8. Coupling ecology and evolution: malaria and the S-gene across time scales. Feng Z, Smit DL, McKenzie FE, Levin SA, Math Biosci 2004 189 1 19 10.1016/j.mbs.2004.01.005 15051411
9. Human red blood cell polymorphisms and malaria. Williams TN, Curr Opin Microbiol 2006 9 388 394 10.1016/j.mib.2006.06.009 16815736
10. Is MHC enough for understanding wildlife immunogenetics? Acevedo-Whitehouse K, Cunningham AA, Trends Ecol Evol 2006 21 433 438 10.1016/j.tree.2006.05.010 16764966
11. The nature of selection on the major histocompatibility complex. Apanius V, Penn D, Slev PR, Ruff LR, Potts WK, Crit Rev Immunol 1997 17 179 224 10.1615/CritRevImmunol.v17.i2.40 9094452
12. Common West African HLA antigens are associated with protection from severe malaria. Hill AVS, Allsopp CEM, Kwiatkowski D, Anstey NM, Twumasi P, Rowe PA, Bennett S, Brewster D, McMichael AJ, Greenwood BM, Nature 1991 352 595 600 10.1038/352595a0 1865923
13. Molecular analysis of the association of HLA-B53 and resistance to severe malaria. Hill AV, Elvin J, Willis AC, Aidoo M, Allsopp CE, Gotch FM, Gao XM, Takiguchi M, Greenwood BM, Townsend AR, Nature 1992 360 434 439 10.1038/360434a0 1280333
14. Association of HLA alleles with Plasmodium falciparum severity in Malian children. Lyke KE, Fernandez-Vina MA, Cao K, Hollenbach J, Coulibaly D, Kone AK, Guindo A, Burdett LA, Hartzman RJ, Wahl AR, Hildebrand WH, Doumbo OK, Plowe CV, Sztein MB, Tissue Antigens 2011 77 562 571 10.1111/j.1399-0039.2011.01661.x 21447146
15. HLA class II factors associated with Plasmodium falciparum merozoite surface antigen allele families. May J, Meyer CG, Kun JFJ, Lell KB, Luckner D, Dippmann AK, Bienzle U, Kremsner PG, J Infect Dis 1999 179 1042 1045 10.1086/314661 10068607
16. HLA-DQB1∗0501-restricted Th1 type immune responses to Plasmodium falciparum liver stage antigen 1 protect against malaria anemia and reinfections. May J, Lell B, Luty AJF, Meyer CG, Kremsner PG, J Infect Dis 2001 183 168 172 10.1086/317642 11076705
17. HLA-DRB1∗04 allele is associated with severe malaria in northern Ghana. Osafo-Addo AD, Koram KA, Oduro AR, Wilson M, Hodgson A, Rogers WO, Am J Trop Med Hyg 2008 78 251 255 18256425
18. Associations between malaria and MHC genes in a migratory songbird. Westerdahl H, Waldenstrom J, Hansson B, Hasselquist D, Von Schantz T, Bensch S, Proc R Soc B 2005 272 1511 1518 10.1098/rspb.2005.3113 16011927
19. Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR, Nucleic Acid Res 2011 39 913 D919 10.1093/nar/gkq1128 21062830
20. Natural selection at major histocompatibility complex loci of vertebrates. Hughes AL, Yeager M, Annu Rev Genet 1998 32 415 435 10.1146/annurev.genet.32.1.415 9928486
21. Pathogen resistance and genetic variation at MHC loci. Hedrick PW, Evolution 2002 56 1902 1908 10.1111/j.0014-3820.2002.tb00116.x 12449477
22. The evolutionary ecology of the major histocompatibility complex. Piertney SB, Oliver MK, Heredity 2006 96 7 21 16094301
23. Correlated evolution of nucleotide substitution rates and allelic variation in Mhc-DRB lineages of primates. Garamszegi LZ, De Groot NG, Bontrop RE, BMC Evol Biol 2009 9 73 10.1186/1471-2148-9-73 19361342
24. Pathogen-driven selection and worldwide HLA class I diversity. Prugnolle F, Manica A, Charpentier M, Guegan JF, Guernier V, Balloux F, Curr Biol 2005 15 1022 1027 10.1016/j.cub.2005.04.050 15936272
25. Coevolution of hosts and parasites. Anderson RM, May RM, Parasitology 1982 85 411 426 10.1017/S0031182000055360 6755367
26. Fitness of parasites: pathology and selection. Combes C, Int J Parasitol 1997 27 1 10 10.1016/S0020-7519(96)00168-3 9076524
27. Nomenclature for the Major Histocompatibility Complexes of different species-a proposal. Klein J, Bontrop RE, Dawkins RL, Erlich HA, Gyllensten UB, Heise ER, Jones PP, Parham P, Wakeland EK, Watkins DI, Immunogenetics 1990 31 217 219 2329006
28. In silico identification of supertypes for class II MHCs. Doytchinova IA, Flower DR, J Immunol 2005 174 7085 7095 10.4049/jimmunol.174.11.7085 15905552
29. HLA class I supertypes: a revised and updated classification. Sidney J, Peters B, Frahm N, Brander C, Sette A, BMC Immunol 2008 9 1 10.1186/1471-2172-9-1 18211710
30. Definition of MHC supertypes through clustering of MHC peptide-binding repertoires. Reche PA, Reinherz EL, Methods Mol Biol 2007 409 163 173 10.1007/978-1-60327-118-9-11 18449999
31. Felsenstein J, Inferring Phylogenies Sunderland, MA: Sinauer Associates 2004
32. Taxon ordering in phylogenetic trees: a workbench test. Cerutti F, Bertolotti L, Goldberg TL, Giacobini M, BMC Bioinformatics 2011 12 58 10.1186/1471-2105-12-58 21352514
33. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Ramachandran S, Deshpande O, Roseman CC, Rosenberg NA, Feldman MW, Cavalli-Sforza LL, Proc Natl Acad Sci U S A 2005 102 15942 15947 10.1073/pnas.0507611102 16243969
34. PHYLIP (Phylogeny Inference Package) version 3.69. Felsenstein J, Book PHYLIP (Phylogeny Inference Package) version 3.69 City: Distributed by the author 2005
35. Paradis E, Analysis of Phylogenetics and Evolution With R Berlin: Springer 2 2011
36. Phylogenies and the comparative method: a general approach to incorporating phylogenetic information into the analysis of interspecific data. Martins EP, Hansen TF, Am Nat 1997 149 646 667 10.1086/286013
37. Cohen J, Statistical Power Analysis for the Behavioural Sciences Hillsdale: Lawrence Erlbaum Associates 2 1988
38. Effect size, confidence interval and statistical significance: a practical guide for biologists. Nakagawa S, Cuthill IC, Biol Rev 2007 82 591 605 10.1111/j.1469-185X.2007.00027.x 17944619
39. Borenstein M, Hedges LV, Higgins JPT, Rothstein HR, Introduction to Meta-Analysis West Sussex, United Kingdom: John Wiley & Sons, Ltd 2009
40. R Development Core Team, R: A Language and Environment for Statistical Computing Vienna, Austria: R Foundation for Statistical Computing 2013
41. Genetic polymorphisms linked to susceptibility to malaria. Driss A, Hibbert JM, Wilson NO, Iqbal SA, Adamkiewicz TV, Stiles JK, Malar J 2011 10 271 10.1186/1475-2875-10-271 21929748
42. Plasmodium relictum infection and MHC diversity in the house sparrow (Passer domesticus). Loiseau C, Zoorob R, Robert A, Chastel O, Julliard R, Sorci G, Proc R Soc B 2011 278 1264 1272 10.1098/rspb.2010.1968 20943698
43. Intensity of natural selection at the major histocompatibility complex loci. Satta Y, O'hUigin C, Takahata N, Klein J, Proc Natl Acad Sci U S A 1994 91 7184 7188 10.1073/pnas.91.15.7184 8041766
44. Molecular structure of human histocompatibility antigens: the HLA-C series. Snary D, Barnstable CJ, Bodmer WF, Crumpton MJ, Eur J Immunol 1977 7 580 585 10.1002/eji.1830070816 332508
45. Independent origin of functional MHC class II genes in humans and New World monkeys. Kriener K, O'HUigin C, Klein J, Hum Immunol 2001 62 1 14 10.1016/S0198-8859(00)00233-0 11165710
46. HLA-DPB polymorphisms: Glu 69 association with sarcoidosis. Lympany PA, Petrek M, Southcott AM, Taylor AJN, Welsh KI, Du Bois RM, Eur J Immunogenet 1996 23 353 359 10.1111/j.1744-313X.1996.tb00008.x 8909942
47. Comprehensive characterization of MHC class II haplotypes in Mauritian cynomolgus macaques. O'Connor SL, Blasky AJ, Pendley CJ, Becker EA, Wiseman RW, Karl JA, Hughes AL, O'Connor DH, Immunogenetics 2007 59 449 462 10.1007/s00251-007-0209-7 17384942
48. Malaria evolution in vector control. Michalakis Y, Renaud F, Nature 2009 462 298 300 10.1038/462298a 19924207
49. Malaria control and the evolution of drug resistance: an intriguing link. Hastings IM, Trends Parasitol 2003 19 70 73 10.1016/S1471-4922(02)00017-X 12586474