-
1
-
-
79551682471
-
Activation of plant pattern-recognition receptors by bacteria
-
Segonzac C, Zipfel C, (2011) Activation of plant pattern-recognition receptors by bacteria. Curr Opin Microbiol 14: 54–61.
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 54-61
-
-
Segonzac, C.1
Zipfel, C.2
-
2
-
-
33751100626
-
The plant immune system
-
Jones JD, Dangl JL, (2006) The plant immune system. Nature 444: 323–329.
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.D.1
Dangl, J.L.2
-
3
-
-
67249143521
-
The zig-zag-zig in oomycete-plant interactions
-
Hein I, Gilroy EM, Armstrong MR, Birch PR, (2009) The zig-zag-zig in oomycete-plant interactions. Mol Plant Pathol 10: 547–562.
-
(2009)
Mol Plant Pathol
, vol.10
, pp. 547-562
-
-
Hein, I.1
Gilroy, E.M.2
Armstrong, M.R.3
Birch, P.R.4
-
4
-
-
35348915452
-
Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes
-
Win J, Morgan W, Bos J, Krasileva KV, Cano LM, et al. (2007) Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Cell 19: 2349–2369.
-
(2007)
Plant Cell
, vol.19
, pp. 2349-2369
-
-
Win, J.1
Morgan, W.2
Bos, J.3
Krasileva, K.V.4
Cano, L.M.5
-
5
-
-
80051774062
-
Understanding and exploiting late blight resistance in the age of effectors
-
Vleeshouwers VG, Raffaele S, Vossen JH, Champouret N, Oliva R, et al. (2011) Understanding and exploiting late blight resistance in the age of effectors. Annu Rev Phytopathol 49: 507–531.
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 507-531
-
-
Vleeshouwers, V.G.1
Raffaele, S.2
Vossen, J.H.3
Champouret, N.4
Oliva, R.5
-
6
-
-
77956095798
-
Hyaloperonospora Arabidopsidis as a pathogen model
-
Coates ME, Beynon JL, (2010) Hyaloperonospora Arabidopsidis as a pathogen model. Annu Rev Phytopathol 48: 329–345.
-
(2010)
Annu Rev Phytopathol
, vol.48
, pp. 329-345
-
-
Coates, M.E.1
Beynon, J.L.2
-
7
-
-
78650126298
-
Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome
-
Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, et al. (2010) Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science 330: 1549–1551.
-
(2010)
Science
, vol.330
, pp. 1549-1551
-
-
Baxter, L.1
Tripathy, S.2
Ishaque, N.3
Boot, N.4
Cabral, A.5
-
8
-
-
81755163005
-
Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity
-
Fabro G, Steinbrenner J, Coates M, Ishaque N, Baxter L, et al. (2011) Multiple candidate effectors from the oomycete pathogen Hyaloperonospora arabidopsidis suppress host plant immunity. PLoS Pathog 7: e1002348.
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002348
-
-
Fabro, G.1
Steinbrenner, J.2
Coates, M.3
Ishaque, N.4
Baxter, L.5
-
9
-
-
84878638986
-
In planta effector competition assays detect Hyaloperonospora arabidopsidis effectors that contribute to virulence and localize to different plant subcellular compartments
-
Badel JL, Piquerez SJ, Greenshields D, Rallapalli G, Fabro G, et al. (2013) In planta effector competition assays detect Hyaloperonospora arabidopsidis effectors that contribute to virulence and localize to different plant subcellular compartments. Mol Plant Microbe Interact 26: 745–757.
-
(2013)
Mol Plant Microbe Interact
, vol.26
, pp. 745-757
-
-
Badel, J.L.1
Piquerez, S.J.2
Greenshields, D.3
Rallapalli, G.4
Fabro, G.5
-
10
-
-
84855682453
-
Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility
-
Caillaud MC, Piquerez SJM, Fabro G, Steinbrenner J, Ishaque N, et al. (2012) Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility. Plant J 69: 252–265.
-
(2012)
Plant J
, vol.69
, pp. 252-265
-
-
Caillaud, M.C.1
Piquerez, S.J.M.2
Fabro, G.3
Steinbrenner, J.4
Ishaque, N.5
-
11
-
-
79960957705
-
Independently evolved virulence effectors converge onto hubs in a plant immune system network
-
Mukhtar MS, Carvunis AR, Dreze M, Epple P, Steinbrenner J, et al. (2011) Independently evolved virulence effectors converge onto hubs in a plant immune system network. Science 333: 596–601.
-
(2011)
Science
, vol.333
, pp. 596-601
-
-
Mukhtar, M.S.1
Carvunis, A.R.2
Dreze, M.3
Epple, P.4
Steinbrenner, J.5
-
12
-
-
69949097909
-
Salicylic Acid, a multifaceted hormone to combat disease
-
Vlot AC, Dempsey DA, Klessig DF, (2009) Salicylic Acid, a multifaceted hormone to combat disease. Annu Rev Phytopathol 47: 177–206.
-
(2009)
Annu Rev Phytopathol
, vol.47
, pp. 177-206
-
-
Vlot, A.C.1
Dempsey, D.A.2
Klessig, D.F.3
-
13
-
-
34247349556
-
Pathogen-associated molecular pattern recognition rather than development of tissue necrosis contributes to bacterial induction of systemic acquired resistance in Arabidopsis
-
Mishina TE, Zeier J, (2007) Pathogen-associated molecular pattern recognition rather than development of tissue necrosis contributes to bacterial induction of systemic acquired resistance in Arabidopsis. Plant J 50: 500–513.
-
(2007)
Plant J
, vol.50
, pp. 500-513
-
-
Mishina, T.E.1
Zeier, J.2
-
14
-
-
4444371862
-
NPR1, all things considered
-
Dong X, (2004) NPR1, all things considered. Curr Opin Plant Biol 7: 547–552.
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 547-552
-
-
Dong, X.1
-
15
-
-
79955734613
-
Jasmonate-induced defenses: a tale of intelligence, collaborators and rascals
-
Ballare CL, (2011) Jasmonate-induced defenses: a tale of intelligence, collaborators and rascals. Trends Plant Sci 16: 249–257.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 249-257
-
-
Ballare, C.L.1
-
16
-
-
24944436247
-
Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens
-
Glazebrook J, (2005) Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu Rev Phytopathol 43: 205–227.
-
(2005)
Annu Rev Phytopathol
, vol.43
, pp. 205-227
-
-
Glazebrook, J.1
-
17
-
-
84889066529
-
Nuclear jasmonate and salicylate signaling and crosstalk in defense against pathogens
-
Gimenez-Ibanez S, Solano R, (2013) Nuclear jasmonate and salicylate signaling and crosstalk in defense against pathogens. Front Plant Sci 4: 72.
-
(2013)
Front Plant Sci
, vol.4
, pp. 72
-
-
Gimenez-Ibanez, S.1
Solano, R.2
-
18
-
-
84892673608
-
A downy mildew effector attenuates salicylic acid-triggered immunity in Arabidopsis by interacting with the host mediator complex
-
Caillaud MC, Asai S, Rallapalli G, Piquerez SJM, Fabro G, et al. (2013) A downy mildew effector attenuates salicylic acid-triggered immunity in Arabidopsis by interacting with the host mediator complex. PLoS Biol 11: e1001732.
-
(2013)
PLoS Biol
, vol.11
, pp. e1001732
-
-
Caillaud, M.C.1
Asai, S.2
Rallapalli, G.3
Piquerez, S.J.M.4
Fabro, G.5
-
19
-
-
84887266556
-
Bacterial effector activates jasmonate signaling by directly targeting JAZ transcriptional repressors
-
Jiang S, Yao J, Ma KW, Zhou H, Song J, et al. (2013) Bacterial effector activates jasmonate signaling by directly targeting JAZ transcriptional repressors. PLoS Pathog 9: e1003715.
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003715
-
-
Jiang, S.1
Yao, J.2
Ma, K.W.3
Zhou, H.4
Song, J.5
-
20
-
-
84862285298
-
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation
-
Zheng XY, Spivey NW, Zeng W, Liu PP, Fu ZQ, et al. (2012) Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe 11: 587–596.
-
(2012)
Cell Host Microbe
, vol.11
, pp. 587-596
-
-
Zheng, X.Y.1
Spivey, N.W.2
Zeng, W.3
Liu, P.P.4
Fu, Z.Q.5
-
21
-
-
79960923169
-
Botrytis cinerea manipulates the antagonistic effects between immune pathways to promote disease development in tomato
-
El Oirdi M, El Rahman TA, Rigano L, El Hadrami A, Rodriguez MC, et al. (2011) Botrytis cinerea manipulates the antagonistic effects between immune pathways to promote disease development in tomato. Plant Cell 23: 2405–2421.
-
(2011)
Plant Cell
, vol.23
, pp. 2405-2421
-
-
El Oirdi, M.1
El Rahman, T.A.2
Rigano, L.3
El Hadrami, A.4
Rodriguez, M.C.5
-
22
-
-
67650116297
-
Different lepidopteran elicitors account for cross-talk in herbivory-induced phytohormone signaling
-
Diezel C, von Dahl CC, Gaquerel E, Baldwin IT, (2009) Different lepidopteran elicitors account for cross-talk in herbivory-induced phytohormone signaling. Plant Physiol 150: 1576–1586.
-
(2009)
Plant Physiol
, vol.150
, pp. 1576-1586
-
-
Diezel, C.1
Von Dahl, C.C.2
Gaquerel, E.3
Baldwin, I.T.4
-
23
-
-
34547093636
-
The phytotoxin coronatine contributes to pathogen fitness and is required for suppression of salicylic acid accumulation in tomato inoculated with Pseudomonas syringae pv. tomato DC3000
-
Uppalapati SR, Ishiga Y, Wangdi T, Kunkel BN, Anand A, et al. (2007) The phytotoxin coronatine contributes to pathogen fitness and is required for suppression of salicylic acid accumulation in tomato inoculated with Pseudomonas syringae pv. tomato DC3000. Mol Plant Microbe Interact 20: 955–965.
-
(2007)
Mol Plant Microbe Interact
, vol.20
, pp. 955-965
-
-
Uppalapati, S.R.1
Ishiga, Y.2
Wangdi, T.3
Kunkel, B.N.4
Anand, A.5
-
24
-
-
65349143346
-
(+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate
-
Fonseca S, Chini A, Hamberg M, Adie B, Porzel A, et al. (2009) (+)-7-iso-Jasmonoyl-L-isoleucine is the endogenous bioactive jasmonate. Nat Chem Biol 5: 344–350.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 344-350
-
-
Fonseca, S.1
Chini, A.2
Hamberg, M.3
Adie, B.4
Porzel, A.5
-
25
-
-
80051746279
-
Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism
-
Robert-Seilaniantz A, Grant M, Jones JD, (2011) Hormone crosstalk in plant disease and defense: more than just jasmonate-salicylate antagonism. Annu Rev Phytopathol 49: 317–343.
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 317-343
-
-
Robert-Seilaniantz, A.1
Grant, M.2
Jones, J.D.3
-
26
-
-
0033662422
-
The transcriptome of Arabidopsis thaliana during systemic acquired resistance
-
Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, et al. (2000) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat Genet 26: 403–410.
-
(2000)
Nat Genet
, vol.26
, pp. 403-410
-
-
Maleck, K.1
Levine, A.2
Eulgem, T.3
Morgan, A.4
Schmid, J.5
-
27
-
-
3042537244
-
Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance
-
Eulgem T, Weigman VJ, Chang HS, McDowell JM, Holub EB, et al. (2004) Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance. Plant Physiol 135: 1129–1144.
-
(2004)
Plant Physiol
, vol.135
, pp. 1129-1144
-
-
Eulgem, T.1
Weigman, V.J.2
Chang, H.S.3
McDowell, J.M.4
Holub, E.B.5
-
28
-
-
68949150692
-
Disease-specific expression of host genes during downy mildew infection of Arabidopsis
-
Huibers RP, de Jong M, Dekter RW, Van den Ackerveken G, (2009) Disease-specific expression of host genes during downy mildew infection of Arabidopsis. Mol Plant Microbe Interact 22: 1104–1115.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 1104-1115
-
-
Huibers, R.P.1
De Jong, M.2
Dekter, R.W.3
Van Den Ackerveken, G.4
-
29
-
-
79551662808
-
Timing of plant immune responses by a central circadian regulator
-
Wang W, Barnaby JY, Tada Y, Li H, Tor M, et al. (2011) Timing of plant immune responses by a central circadian regulator. Nature 470: 110–114.
-
(2011)
Nature
, vol.470
, pp. 110-114
-
-
Wang, W.1
Barnaby, J.Y.2
Tada, Y.3
Li, H.4
Tor, M.5
-
30
-
-
0033894607
-
cDNA-AFLP display for the isolation of Peronospora parasitica genes expressed during infection in Arabidopsis thaliana
-
van der Biezen EA, Juwana H, Parker JE, Jones JD, (2000) cDNA-AFLP display for the isolation of Peronospora parasitica genes expressed during infection in Arabidopsis thaliana. Mol Plant Microbe Interact 13: 895–898.
-
(2000)
Mol Plant Microbe Interact
, vol.13
, pp. 895-898
-
-
Van Der Biezen, E.A.1
Juwana, H.2
Parker, J.E.3
Jones, J.D.4
-
31
-
-
0242676038
-
Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana
-
Bittner-Eddy PD, Allen RL, Rehmany AP, Birch P, Beynon JL, (2003) Use of suppression subtractive hybridization to identify downy mildew genes expressed during infection of Arabidopsis thaliana. Mol Plant Pathol 4: 501–507.
-
(2003)
Mol Plant Pathol
, vol.4
, pp. 501-507
-
-
Bittner-Eddy, P.D.1
Allen, R.L.2
Rehmany, A.P.3
Birch, P.4
Beynon, J.L.5
-
32
-
-
79955795639
-
Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectors
-
Cabral A, Stassen JH, Seidl MF, Bautor J, Parker JE, et al. (2011) Identification of Hyaloperonospora arabidopsidis transcript sequences expressed during infection reveals isolate-specific effectors. PLoS One 6: e19328.
-
(2011)
PLoS One
, vol.6
, pp. e19328
-
-
Cabral, A.1
Stassen, J.H.2
Seidl, M.F.3
Bautor, J.4
Parker, J.E.5
-
33
-
-
84900470899
-
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics
-
Rallapalli G, Kemen EM, Robert-Seilaniantz A, Segonzac C, Etherington GJ, et al. (2014) EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics 15: 341.
-
(2014)
BMC Genomics
, vol.15
, pp. 341
-
-
Rallapalli, G.1
Kemen, E.M.2
Robert-Seilaniantz, A.3
Segonzac, C.4
Etherington, G.J.5
-
34
-
-
0036008975
-
Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components
-
van der Biezen EA, Freddie CT, Kahn K, Parker JE, Jones JD, (2002) Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components. Plant J 29: 439–451.
-
(2002)
Plant J
, vol.29
, pp. 439-451
-
-
Van Der Biezen, E.A.1
Freddie, C.T.2
Kahn, K.3
Parker, J.E.4
Jones, J.D.5
-
35
-
-
27944450693
-
Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines
-
Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, et al. (2005) Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell 17: 1839–1850.
-
(2005)
Plant Cell
, vol.17
, pp. 1839-1850
-
-
Rehmany, A.P.1
Gordon, A.2
Rose, L.E.3
Allen, R.L.4
Armstrong, M.R.5
-
36
-
-
0025429011
-
Arabidopsis is susceptible to infection by a downy mildew fungus
-
Koch E, Slusarenko A, (1990) Arabidopsis is susceptible to infection by a downy mildew fungus. Plant Cell 2: 437–445.
-
(1990)
Plant Cell
, vol.2
, pp. 437-445
-
-
Koch, E.1
Slusarenko, A.2
-
37
-
-
84871941915
-
Homologous RXLR effectors from Hyaloperonospora arabidopsidis and Phytophthora sojae suppress immunity in distantly related plants
-
Anderson RG, Casady MS, Fee RA, Vaughan MM, Deb D, et al. (2012) Homologous RXLR effectors from Hyaloperonospora arabidopsidis and Phytophthora sojae suppress immunity in distantly related plants. Plant J doi: []10.1111/j.1365-313X.2012.05079.x [epub ahead of print]
-
(2012)
Plant J
-
-
Anderson, R.G.1
Casady, M.S.2
Fee, R.A.3
Vaughan, M.M.4
Deb, D.5
-
38
-
-
16544393499
-
Host-parasite coevolutionary conflict between Arabidopsis and downy mildew
-
Allen RL, Bittner-Eddy PD, Grenvitte-Briggs LJ, Meitz JC, Rehmany AP, et al. (2004) Host-parasite coevolutionary conflict between Arabidopsis and downy mildew. Science 306: 1957–1960.
-
(2004)
Science
, vol.306
, pp. 1957-1960
-
-
Allen, R.L.1
Bittner-Eddy, P.D.2
Grenvitte-Briggs, L.J.3
Meitz, J.C.4
Rehmany, A.P.5
-
39
-
-
84859194053
-
Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene
-
Goritschnig S, Krasileva KV, Dahlbeck D, Staskawicz BJ, (2012) Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene. PLoS Genet 8: e1002502.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002502
-
-
Goritschnig, S.1
Krasileva, K.V.2
Dahlbeck, D.3
Staskawicz, B.J.4
-
40
-
-
79959371490
-
Emoy2 from Hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis
-
Bailey K, Cevik V, Holton N, Byrne-Richardson J, Sohn KH, et al. (2011) Molecular cloning of ATR5Emoy2 from Hyaloperonospora arabidopsidis, an avirulence determinant that triggers RPP5-mediated defense in Arabidopsis. Mol Plant Microbe Interact 24: 827–838.
-
(2011)
Mol Plant Microbe Interact
, vol.24
, pp. 827-838
-
-
Bailey, K.1
Cevik, V.2
Holton, N.3
Byrne-Richardson, J.4
Sohn, K.H.5
-
41
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey TL, Boden M, Buske FA, Frith M, Grant CE, et al. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202–208.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202-208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
-
42
-
-
79953300078
-
FIMO: scanning for occurrences of a given motif
-
Grant CE, Bailey TL, Noble WS, (2011) FIMO: scanning for occurrences of a given motif. Bioinformatics 27: 1017–1018.
-
(2011)
Bioinformatics
, vol.27
, pp. 1017-1018
-
-
Grant, C.E.1
Bailey, T.L.2
Noble, W.S.3
-
43
-
-
84873708528
-
Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis
-
Roy S, Poidevin L, Jiang T, Judelson HS, (2013) Novel core promoter elements in the oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis. BMC Genomics 14: 106.
-
(2013)
BMC Genomics
, vol.14
, pp. 106
-
-
Roy, S.1
Poidevin, L.2
Jiang, T.3
Judelson, H.S.4
-
44
-
-
84871220669
-
Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans
-
Seidl MF, Wang RP, Van den Ackerveken G, Govers F, Snel B, (2012) Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans. PLoS One 7: e51295.
-
(2012)
PLoS One
, vol.7
, pp. e51295
-
-
Seidl, M.F.1
Wang, R.P.2
Van Den Ackerveken, G.3
Govers, F.4
Snel, B.5
-
45
-
-
34447506667
-
Quantifying similarity between motifs
-
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS, (2007) Quantifying similarity between motifs. Genome Biol 8: R24.
-
(2007)
Genome Biol
, vol.8
, pp. R24
-
-
Gupta, S.1
Stamatoyannopoulos, J.A.2
Bailey, T.L.3
Noble, W.S.4
-
46
-
-
84868116496
-
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen
-
Cooke DE, Cano LM, Raffaele S, Bain RA, Cooke LR, et al. (2012) Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathog 8: e1002940.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002940
-
-
Cooke, D.E.1
Cano, L.M.2
Raffaele, S.3
Bain, R.A.4
Cooke, L.R.5
-
47
-
-
0032202153
-
Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants
-
Botella MA, Parker JE, Frost LN, Bittner-Eddy PD, Beynon JL, et al. (1998) Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica avirulence determinants. Plant Cell 10: 1847–1860.
-
(1998)
Plant Cell
, vol.10
, pp. 1847-1860
-
-
Botella, M.A.1
Parker, J.E.2
Frost, L.N.3
Bittner-Eddy, P.D.4
Beynon, J.L.5
-
48
-
-
33751415153
-
A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants
-
Wang D, Amornsiripanitch N, Dong XN, (2006) A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathog 2: e123.
-
(2006)
PLoS Pathog
, vol.2
, pp. e123
-
-
Wang, D.1
Amornsiripanitch, N.2
Dong, X.N.3
-
49
-
-
0030938488
-
The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats
-
Cao H, Glazebrook J, Clarke JD, Volko S, Dong XN, (1997) The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats. Cell 88: 57–63.
-
(1997)
Cell
, vol.88
, pp. 57-63
-
-
Cao, H.1
Glazebrook, J.2
Clarke, J.D.3
Volko, S.4
Dong, X.N.5
-
51
-
-
0344390892
-
Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation
-
Nawrath C, Metraux JP, (1999) Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation. Plant Cell 11: 1393–1404.
-
(1999)
Plant Cell
, vol.11
, pp. 1393-1404
-
-
Nawrath, C.1
Metraux, J.P.2
-
52
-
-
3042748124
-
A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants
-
DebRoy S, Thilmony R, Kwack YB, Nomura K, He SY, (2004) A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants. Proc Natl Acad Sci U S A 101: 9927–9932.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 9927-9932
-
-
Debroy, S.1
Thilmony, R.2
Kwack, Y.B.3
Nomura, K.4
He, S.Y.5
-
53
-
-
84880973936
-
Export of Salicylic Acid from the Chloroplast Requires the Multidrug and Toxin Extrusion-Like Transporter EDS5
-
Serrano M, Wang BJ, Aryal B, Garcion C, Abou-Mansour E, et al. (2013) Export of Salicylic Acid from the Chloroplast Requires the Multidrug and Toxin Extrusion-Like Transporter EDS5. Plant Physiol 162: 1815–1821.
-
(2013)
Plant Physiol
, vol.162
, pp. 1815-1821
-
-
Serrano, M.1
Wang, B.J.2
Aryal, B.3
Garcion, C.4
Abou-Mansour, E.5
-
54
-
-
0035969499
-
Isochorismate synthase is required to synthesize salicylic acid for plant defence
-
Wildermuth MC, Dewdney J, Wu G, Ausubel FM, (2001) Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 414: 562–565.
-
(2001)
Nature
, vol.414
, pp. 562-565
-
-
Wildermuth, M.C.1
Dewdney, J.2
Wu, G.3
Ausubel, F.M.4
-
55
-
-
70349664314
-
ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFICIENT2 expression to negatively regulate plant innate immunity in Arabidopsis
-
Chen HM, Xue L, Chintamanani S, Germain H, Lin HQ, et al. (2009) ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFICIENT2 expression to negatively regulate plant innate immunity in Arabidopsis. Plant Cell 21: 2527–2540.
-
(2009)
Plant Cell
, vol.21
, pp. 2527-2540
-
-
Chen, H.M.1
Xue, L.2
Chintamanani, S.3
Germain, H.4
Lin, H.Q.5
-
56
-
-
77956295099
-
Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1
-
Boutrot F, Segonzac C, Chang KN, Qiao H, Ecker JR, et al. (2010) Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1. Proc Natl Acad Sci U S A 107: 14502–14507.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14502-14507
-
-
Boutrot, F.1
Segonzac, C.2
Chang, K.N.3
Qiao, H.4
Ecker, J.R.5
-
57
-
-
0038402748
-
Abscisic acid influences the susceptibility of Arabidopsis thaliana to Pseudomonas syringae pv. tomato and Peronospora parasitica
-
Mohr PG, Cahill DM, (2003) Abscisic acid influences the susceptibility of Arabidopsis thaliana to Pseudomonas syringae pv. tomato and Peronospora parasitica. Funct Plant Biol 30: 461–469.
-
(2003)
Funct Plant Biol
, vol.30
, pp. 461-469
-
-
Mohr, P.G.1
Cahill, D.M.2
-
58
-
-
67651204870
-
Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses
-
de Torres-Zabala M, Bennett MH, Truman WH, Grant MR, (2009) Antagonism between salicylic and abscisic acid reflects early host-pathogen conflict and moulds plant defence responses. Plant J 59: 375–386.
-
(2009)
Plant J
, vol.59
, pp. 375-386
-
-
De Torres-Zabala, M.1
Bennett, M.H.2
Truman, W.H.3
Grant, M.R.4
-
59
-
-
68249146453
-
Abscisic acid has a key role in modulating diverse plant-pathogen interactions
-
Fan J, Hill L, Crooks C, Doerner P, Lamb C, (2009) Abscisic acid has a key role in modulating diverse plant-pathogen interactions. Plant Physiol 150: 1750–1761.
-
(2009)
Plant Physiol
, vol.150
, pp. 1750-1761
-
-
Fan, J.1
Hill, L.2
Crooks, C.3
Doerner, P.4
Lamb, C.5
-
60
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, et al. (2006) A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312: 436–439.
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
-
61
-
-
34248169393
-
GH3-mediated auxin homeostasis links growth regulation with stress adaptation response in Arabidopsis
-
Park JE, Park JY, Kim YS, Staswick PE, Jeon J, et al. (2007) GH3-mediated auxin homeostasis links growth regulation with stress adaptation response in Arabidopsis. J Biol Chem 282: 10036–10046.
-
(2007)
J Biol Chem
, vol.282
, pp. 10036-10046
-
-
Park, J.E.1
Park, J.Y.2
Kim, Y.S.3
Staswick, P.E.4
Jeon, J.5
-
62
-
-
79960266065
-
The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates
-
Robert-Seilaniantz A, MacLean D, Jikumaru Y, Hill L, Yamaguchi S, et al. (2011) The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates. Plant J 67: 218–231.
-
(2011)
Plant J
, vol.67
, pp. 218-231
-
-
Robert-Seilaniantz, A.1
Maclean, D.2
Jikumaru, Y.3
Hill, L.4
Yamaguchi, S.5
-
63
-
-
84878294506
-
Auxin promotes susceptibility to Pseudomonas syringae via a mechanism independent of suppression of salicylic acid-mediated defenses
-
Mutka AM, Fawley S, Tsao T, Kunkel BN, (2013) Auxin promotes susceptibility to Pseudomonas syringae via a mechanism independent of suppression of salicylic acid-mediated defenses. Plant J 74: 746–754.
-
(2013)
Plant J
, vol.74
, pp. 746-754
-
-
Mutka, A.M.1
Fawley, S.2
Tsao, T.3
Kunkel, B.N.4
-
64
-
-
33947105614
-
Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease
-
de Torres-Zabala M, Truman W, Bennett MH, Lafforgue G, Mansfield JW, et al. (2007) Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease. EMBO J 26: 1434–1443.
-
(2007)
EMBO J
, vol.26
, pp. 1434-1443
-
-
De Torres-Zabala, M.1
Truman, W.2
Bennett, M.H.3
Lafforgue, G.4
Mansfield, J.W.5
-
65
-
-
0035986961
-
The Xanthomonas type III effector protein AvrBs3 modulates plant gene expression and induces cell hypertrophy in the susceptible host
-
Marois E, Van den Ackerveken G, Bonas U, (2002) The Xanthomonas type III effector protein AvrBs3 modulates plant gene expression and induces cell hypertrophy in the susceptible host. Mol Plant Microbe Interact 15: 637–646.
-
(2002)
Mol Plant Microbe Interact
, vol.15
, pp. 637-646
-
-
Marois, E.1
Van Den Ackerveken, G.2
Bonas, U.3
-
66
-
-
78650122420
-
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
-
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, et al. (2010) Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 330: 1543–1546.
-
(2010)
Science
, vol.330
, pp. 1543-1546
-
-
Spanu, P.D.1
Abbott, J.C.2
Amselem, J.3
Burgis, T.A.4
Soanes, D.M.5
-
67
-
-
64549106515
-
Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a
-
Qutob D, Tedman-Jones J, Dong SM, Kuflu K, Pham H, et al. (2009) Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a. PLoS One 4: e5066.
-
(2009)
PLoS One
, vol.4
, pp. e5066
-
-
Qutob, D.1
Tedman-Jones, J.2
Dong, S.M.3
Kuflu, K.4
Pham, H.5
-
68
-
-
84874026483
-
Transgenerational gene silencing causes gain of virulence in a plant pathogen
-
Qutob D, Chapman BP, Gijzen M, (2013) Transgenerational gene silencing causes gain of virulence in a plant pathogen. Nat Commun 4: 1349.
-
(2013)
Nat Commun
, vol.4
, pp. 1349.
-
-
Qutob, D.1
Chapman, B.P.2
Gijzen, M.3
-
69
-
-
84881510683
-
Mechanisms of nuclear suppression of host immunity by effectors from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis (Hpa)
-
Caillaud MC, Wirthmueller L, Fabro G, Piquerez SJ, Asai S, et al. (2012) Mechanisms of nuclear suppression of host immunity by effectors from the Arabidopsis downy mildew pathogen Hyaloperonospora arabidopsidis (Hpa). Cold Spring Harb Symp Quant Biol 77: 285–293.
-
(2012)
Cold Spring Harb Symp Quant Biol
, vol.77
, pp. 285-293
-
-
Caillaud, M.C.1
Wirthmueller, L.2
Fabro, G.3
Piquerez, S.J.4
Asai, S.5
-
70
-
-
84879220850
-
Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle
-
Jupe J, Stam R, Howden AJ, Morris JA, Zhang R, et al. (2013) Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle. Genome Biol 14: R63.
-
(2013)
Genome Biol
, vol.14
, pp. R63
-
-
Jupe, J.1
Stam, R.2
Howden, A.J.3
Morris, J.A.4
Zhang, R.5
-
71
-
-
77957662380
-
Balanced nuclear and cytoplasmic activities of EDS1 are required for a complete plant innate immune response
-
Garcia AV, Blanvillain-Baufume S, Huibers RP, Wiermer M, Li G, et al. (2010) Balanced nuclear and cytoplasmic activities of EDS1 are required for a complete plant innate immune response. PLoS Pathog 6: e1000970.
-
(2010)
PLoS Pathog
, vol.6
, pp. e1000970
-
-
Garcia, A.V.1
Blanvillain-Baufume, S.2
Huibers, R.P.3
Wiermer, M.4
Li, G.5
-
72
-
-
0001200134
-
L-DNA gene 5 controls the tissue-specific expression of chimeric genes carried by a novel type of Agrobacterium binary vector
-
Koncz C, Schell J, (1986) The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimeric genes carried by a novel type of Agrobacterium binary vector. Mol Gen Genet 204: 383–396.
-
(1986)
Mol Gen Genet
, vol.204
, pp. 383-396
-
-
Koncz, C.1
Schell, J.2
-
73
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough SJ, Bent AF, (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735–743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
74
-
-
56049097303
-
MAPK signaling regulates nitric oxide and NADPH oxidase-dependent oxidative bursts in Nicotiana benthamiana
-
Asai S, Ohta K, Yoshioka H, (2008) MAPK signaling regulates nitric oxide and NADPH oxidase-dependent oxidative bursts in Nicotiana benthamiana. Plant Cell 20: 1390–1406.
-
(2008)
Plant Cell
, vol.20
, pp. 1390-1406
-
-
Asai, S.1
Ohta, K.2
Yoshioka, H.3
-
75
-
-
68149092391
-
Nitric oxide as a partner of reactive oxygen species participates in disease resistance to necrotrophic pathogen Botrytis cinerea in Nicotiana benthamiana
-
Asai S, Yoshioka H, (2009) Nitric oxide as a partner of reactive oxygen species participates in disease resistance to necrotrophic pathogen Botrytis cinerea in Nicotiana benthamiana. Mol Plant Microbe Interact 22: 619–629.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 619-629
-
-
Asai, S.1
Yoshioka, H.2
-
76
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754–1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
77
-
-
79956307251
-
Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
Lunter G, Goodson M, (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21: 936–939.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
78
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078–2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
79
-
-
84875634162
-
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
-
Thorvaldsdottir H, Robinson JT, Mesirov JP, (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14: 178–192.
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
80
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
81
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
82
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139–140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
|