메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Comparative genomics and transcriptomics in ants provide new insights into the evolution and function of odorant binding and chemosensory proteins

Author keywords

Chemical communication; Chemosensation; Comparative genomics; CSP; Formicidae; OBP; Sociogenomics

Indexed keywords

FORMICIDAE;

EID: 84908212562     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-718     Document Type: Article
Times cited : (66)

References (84)
  • 1
    • 84872858771 scopus 로고    scopus 로고
    • The molecular basis of social behavior: models, methods and advances
    • LeBoeuf AC, Benton R, Keller L. The molecular basis of social behavior: models, methods and advances. Curr Opin Neurobiol 2012, 23:3-10.
    • (2012) Curr Opin Neurobiol , vol.23 , pp. 3-10
    • LeBoeuf, A.C.1    Benton, R.2    Keller, L.3
  • 2
    • 84883798301 scopus 로고    scopus 로고
    • Ant genomics sheds light on the molecular regulation of social organization
    • Libbrecht R, Oxley P, Kronauer DJC, Keller L. Ant genomics sheds light on the molecular regulation of social organization. Genome Biol 2013, 14:212.
    • (2013) Genome Biol , vol.14 , pp. 212
    • Libbrecht, R.1    Oxley, P.2    Kronauer, D.J.C.3    Keller, L.4
  • 3
    • 84880604716 scopus 로고    scopus 로고
    • Intracolony chemical communication in social insects
    • Richard FJ, Hunt JH. Intracolony chemical communication in social insects. Insect Soc 2013, 60:275-291.
    • (2013) Insect Soc , vol.60 , pp. 275-291
    • Richard, F.J.1    Hunt, J.H.2
  • 4
    • 84866174382 scopus 로고    scopus 로고
    • Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding
    • Zhou X, Slone JD, Rokas A, Berger SL, Liebig J, Ray A, Reinberg D, Zwiebel LJ. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. PLoS Genet 2012, 8:e1002930.
    • (2012) PLoS Genet , vol.8 , pp. e1002930
    • Zhou, X.1    Slone, J.D.2    Rokas, A.3    Berger, S.L.4    Liebig, J.5    Ray, A.6    Reinberg, D.7    Zwiebel, L.J.8
  • 6
    • 84873807676 scopus 로고    scopus 로고
    • Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes
    • Leal WS. Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes. Annu Rev Entomol 2013, 58:373-391.
    • (2013) Annu Rev Entomol , vol.58 , pp. 373-391
    • Leal, W.S.1
  • 7
    • 34249011110 scopus 로고    scopus 로고
    • Odorant-binding proteins OBP57d and OBP57e affect taste perception and host-plant preference in Drosophila sechellia
    • Matsuo T, Sugaya S, Yasukawa J, Aigaki T, Fuyama Y. Odorant-binding proteins OBP57d and OBP57e affect taste perception and host-plant preference in Drosophila sechellia. PLoS Biol 2007, 5:e118.
    • (2007) PLoS Biol , vol.5 , pp. e118
    • Matsuo, T.1    Sugaya, S.2    Yasukawa, J.3    Aigaki, T.4    Fuyama, Y.5
  • 8
    • 78649278233 scopus 로고    scopus 로고
    • Expression analysis and knockdown of two antennal odorant-binding protein genes in Aedes aegypti
    • Sengul MS, Tu Z. Expression analysis and knockdown of two antennal odorant-binding protein genes in Aedes aegypti. J Insect Sci 2010, 10:1-18.
    • (2010) J Insect Sci , vol.10 , pp. 1-18
    • Sengul, M.S.1    Tu, Z.2
  • 9
    • 84892541219 scopus 로고    scopus 로고
    • Modulation of feeding behavior by odorant-binding proteins in Drosophila melanogaster
    • Swarup S, Morozova TV, Sridhar S, Nokes M, Anholt RRH. Modulation of feeding behavior by odorant-binding proteins in Drosophila melanogaster. Chem Senses 2014, 39:125-132.
    • (2014) Chem Senses , vol.39 , pp. 125-132
    • Swarup, S.1    Morozova, T.V.2    Sridhar, S.3    Nokes, M.4    Anholt, R.R.H.5
  • 10
    • 79961026622 scopus 로고    scopus 로고
    • Functional dissection of Odorant binding protein genes in Drosophila melanogaster
    • Swarup S, Williams TI, Anholt RRH. Functional dissection of Odorant binding protein genes in Drosophila melanogaster. Genes Brain Behav 2011, 10:648-657.
    • (2011) Genes Brain Behav , vol.10 , pp. 648-657
    • Swarup, S.1    Williams, T.I.2    Anholt, R.R.H.3
  • 11
    • 0026485561 scopus 로고
    • Purification and localization of p10, a novel protein that increases in nymphal regenerating legs of Periplaneta americana (American cockroach)
    • Nomura A, Kawasaki K, Kubo T, Natori S. Purification and localization of p10, a novel protein that increases in nymphal regenerating legs of Periplaneta americana (American cockroach). Int J Dev Biol 1992, 36:391-398.
    • (1992) Int J Dev Biol , vol.36 , pp. 391-398
    • Nomura, A.1    Kawasaki, K.2    Kubo, T.3    Natori, S.4
  • 12
    • 33847681808 scopus 로고    scopus 로고
    • RNAi-induced phenotypes suggest a novel role for a chemosensory protein CSP5 in the development of embryonic integument in the honeybee (Apis mellifera)
    • Maleszka J, Forêt S, Saint R, Maleszka R. RNAi-induced phenotypes suggest a novel role for a chemosensory protein CSP5 in the development of embryonic integument in the honeybee (Apis mellifera). Dev Genes Evol 2007, 217:189-196.
    • (2007) Dev Genes Evol , vol.217 , pp. 189-196
    • Maleszka, J.1    Forêt, S.2    Saint, R.3    Maleszka, R.4
  • 14
    • 80055089239 scopus 로고    scopus 로고
    • Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: Origin and evolutionary history of the chemosensory system
    • Vieira FG, Rozas J. Comparative genomics of the odorant-binding and chemosensory protein gene families across the Arthropoda: Origin and evolutionary history of the chemosensory system. Genome Biol Evol 2011, 3:476-490.
    • (2011) Genome Biol Evol , vol.3 , pp. 476-490
    • Vieira, F.G.1    Rozas, J.2
  • 15
    • 36048973464 scopus 로고    scopus 로고
    • Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution
    • Vieira FG, Sánchez-Gracia A, Rozas J. Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biol 2007, 8:R235.
    • (2007) Genome Biol , vol.8 , pp. R235
    • Vieira, F.G.1    Sánchez-Gracia, A.2    Rozas, J.3
  • 16
    • 77955592964 scopus 로고    scopus 로고
    • Genome annotation and comparative analyses of the odorant binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum
    • Zhou JJ, Vieira FG, He XL, Smadja C, Liu R, Rozas J, Field LM. Genome annotation and comparative analyses of the odorant binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Mol Biol 2010, 19:113-122.
    • (2010) Insect Mol Biol , vol.19 , pp. 113-122
    • Zhou, J.J.1    Vieira, F.G.2    He, X.L.3    Smadja, C.4    Liu, R.5    Rozas, J.6    Field, L.M.7
  • 17
    • 79551627011 scopus 로고    scopus 로고
    • Odorant binding proteins of the red imported fire ant Solenopsis invicta: an example of the problems facing the analysis of widely divergent Proteins
    • Gotzek D, Robertson HM, Wurm Y, Shoemaker D. Odorant binding proteins of the red imported fire ant Solenopsis invicta: an example of the problems facing the analysis of widely divergent Proteins. PLoS One 2011, 6:e16289.
    • (2011) PLoS One , vol.6 , pp. e16289
    • Gotzek, D.1    Robertson, H.M.2    Wurm, Y.3    Shoemaker, D.4
  • 18
    • 84878548316 scopus 로고    scopus 로고
    • Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates
    • Kulmuni J, Wurm Y, Pamilo P. Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates. Heredity 2013, 110:538-547.
    • (2013) Heredity , vol.110 , pp. 538-547
    • Kulmuni, J.1    Wurm, Y.2    Pamilo, P.3
  • 19
    • 84876518319 scopus 로고    scopus 로고
    • Comparative genomics of odorant binding proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus
    • Manoharan M, Chong MNF, Vatinadapoul A, Frumence E, Sowdhamini R, Offmann B. Comparative genomics of odorant binding proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus. Genome Biol Evol 2013, 5:163-180.
    • (2013) Genome Biol Evol , vol.5 , pp. 163-180
    • Manoharan, M.1    Chong, M.N.F.2    Vatinadapoul, A.3    Frumence, E.4    Sowdhamini, R.5    Offmann, B.6
  • 22
    • 16844382374 scopus 로고    scopus 로고
    • Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic
    • Regier JC, Shultz JW, Kamib RE. Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic. Proc R Soc B 2005, 272:395-401.
    • (2005) Proc R Soc B , vol.272 , pp. 395-401
    • Regier, J.C.1    Shultz, J.W.2    Kamib, R.E.3
  • 23
    • 84888258833 scopus 로고    scopus 로고
    • Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3
    • Han MV, Thomas GWC, Lugo-Martinez J, Hahn MW. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Mol Biol Evol 2012, 30:1987-1997.
    • (2012) Mol Biol Evol , vol.30 , pp. 1987-1997
    • Han, M.V.1    Thomas, G.W.C.2    Lugo-Martinez, J.3    Hahn, M.W.4
  • 25
    • 33750502864 scopus 로고    scopus 로고
    • Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera)
    • Forêt S, Maleszka R. Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera). Genome Res 2006, 16:1404-1413.
    • (2006) Genome Res , vol.16 , pp. 1404-1413
    • Forêt, S.1    Maleszka, R.2
  • 26
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 27
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 2005, 12:2472-2479.
    • (2005) Mol Biol Evol , vol.12 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 28
    • 84867676702 scopus 로고    scopus 로고
    • Asexual reproduction in introduced and native populations of the ant Cerapachys biroi
    • Kronauer DJC, Pierce NE, Keller L. Asexual reproduction in introduced and native populations of the ant Cerapachys biroi. Mol Ecol 2012, 21:5221-5235.
    • (2012) Mol Ecol , vol.21 , pp. 5221-5235
    • Kronauer, D.J.C.1    Pierce, N.E.2    Keller, L.3
  • 30
    • 0037059555 scopus 로고    scopus 로고
    • Identification of a major gene regulating complex social behavior
    • Krieger MJB, Ross KG. Identification of a major gene regulating complex social behavior. Science 2002, 11:328-332.
    • (2002) Science , vol.11 , pp. 328-332
    • Krieger, M.J.B.1    Ross, K.G.2
  • 31
    • 56649117299 scopus 로고    scopus 로고
    • Gp-9 s are ubiquitous proteins unlikely involved in olfactory mediation of social organization in the red imported fire ant Solenopsis invicta
    • Leal WS, Ishida Y. Gp-9 s are ubiquitous proteins unlikely involved in olfactory mediation of social organization in the red imported fire ant Solenopsis invicta. PLoS One 2008, 3:e3762.
    • (2008) PLoS One , vol.3 , pp. e3762
    • Leal, W.S.1    Ishida, Y.2
  • 32
    • 0036864761 scopus 로고    scopus 로고
    • Protein that makes sense in the Argentine ant
    • Ishida Y, Chiang V, Leal WS. Protein that makes sense in the Argentine ant. Naturwissenschaften 2002, 89:505-507.
    • (2002) Naturwissenschaften , vol.89 , pp. 505-507
    • Ishida, Y.1    Chiang, V.2    Leal, W.S.3
  • 34
    • 0035679021 scopus 로고    scopus 로고
    • A large family of divergent Drosophila odorant-binding proteins expressed in gustatory and olfactory sensilla
    • Galindo K, Smith DP. A large family of divergent Drosophila odorant-binding proteins expressed in gustatory and olfactory sensilla. Genetics 2001, 159:1059-1072.
    • (2001) Genetics , vol.159 , pp. 1059-1072
    • Galindo, K.1    Smith, D.P.2
  • 36
    • 33845445510 scopus 로고    scopus 로고
    • Chemosensory proteins in the honey bee: insights from the annotated genome comparative analyses and expressional profiling
    • Forêt S, Wanner KW, Maleszka R. Chemosensory proteins in the honey bee: insights from the annotated genome comparative analyses and expressional profiling. Insect Biochem Mol Biol 2007, 37:19-28.
    • (2007) Insect Biochem Mol Biol , vol.37 , pp. 19-28
    • Forêt, S.1    Wanner, K.W.2    Maleszka, R.3
  • 37
    • 33750500530 scopus 로고    scopus 로고
    • The chemoreceptor superfamily in the honey bee Apis mellifera: expansion of the odorant but not gustatory receptor family
    • Robertson HM, Wanner KW. The chemoreceptor superfamily in the honey bee Apis mellifera: expansion of the odorant but not gustatory receptor family. Genome Res 2006, 16:1395-1403.
    • (2006) Genome Res , vol.16 , pp. 1395-1403
    • Robertson, H.M.1    Wanner, K.W.2
  • 38
    • 34548361941 scopus 로고    scopus 로고
    • Molecular evolution of Drosophila odorant receptor genes
    • Guo S, Kim J. Molecular evolution of Drosophila odorant receptor genes. Mol Biol Evol 2007, 24:1198-1207.
    • (2007) Mol Biol Evol , vol.24 , pp. 1198-1207
    • Guo, S.1    Kim, J.2
  • 41
  • 43
    • 3543109693 scopus 로고    scopus 로고
    • The neurobiology of taste in insects
    • Rogers SM, Newland PL. The neurobiology of taste in insects. Adv Insect Phys 2003, 31:141-204.
    • (2003) Adv Insect Phys , vol.31 , pp. 141-204
    • Rogers, S.M.1    Newland, P.L.2
  • 44
    • 51749125255 scopus 로고    scopus 로고
    • Behavioral studies on tarsal gustation in honeybees: sucrose responsiveness and sucrose-mediated olfactory conditioning
    • de Brito Sanchez MG, Chen C, Li J, Liu F, Gauthier M, Giurfa M. Behavioral studies on tarsal gustation in honeybees: sucrose responsiveness and sucrose-mediated olfactory conditioning. J Comp Pysiol A 2008, 194:861-869.
    • (2008) J Comp Pysiol A , vol.194 , pp. 861-869
    • de Brito Sanchez, M.G.1    Chen, C.2    Li, J.3    Liu, F.4    Gauthier, M.5    Giurfa, M.6
  • 46
    • 0034076880 scopus 로고    scopus 로고
    • Expression patterns of two putative odorant-binding proteins in the olfactory organs of Drosophila melanogaster have different implications for their functions
    • Park SK, Shanbhag SR, Wang Q, Hasan G, Steinbrecht RA, Pikielny CW. Expression patterns of two putative odorant-binding proteins in the olfactory organs of Drosophila melanogaster have different implications for their functions. Cell Tissue Res 2000, 300:181-192.
    • (2000) Cell Tissue Res , vol.300 , pp. 181-192
    • Park, S.K.1    Shanbhag, S.R.2    Wang, Q.3    Hasan, G.4    Steinbrecht, R.A.5    Pikielny, C.W.6
  • 47
    • 40849130633 scopus 로고    scopus 로고
    • The evolution of pheromone diversity
    • Symonds MRE, Elgar MA. The evolution of pheromone diversity. Trends Ecol Evol 2008, 23:220-228.
    • (2008) Trends Ecol Evol , vol.23 , pp. 220-228
    • Symonds, M.R.E.1    Elgar, M.A.2
  • 49
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila models of human disease
    • Chintapalli VR, Wang J, Dow JAT. Using FlyAtlas to identify better Drosophila models of human disease. Nat Genet 2007, 39:715-720.
    • (2007) Nat Genet , vol.39 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.T.3
  • 50
    • 77449134358 scopus 로고    scopus 로고
    • The soluble proteome of the Drosophila antenna
    • Anholt RRH, Williams TI. The soluble proteome of the Drosophila antenna. Chem Senses 2010, 35:21-30.
    • (2010) Chem Senses , vol.35 , pp. 21-30
    • Anholt, R.R.H.1    Williams, T.I.2
  • 51
    • 84878393035 scopus 로고    scopus 로고
    • Insights into the evolution of the CSP gene family through the integration of evolutionary analysis and comparative protein modeling
    • Kulmuni J, Havukainen H. Insights into the evolution of the CSP gene family through the integration of evolutionary analysis and comparative protein modeling. PLoS One 2013, 8:e63688.
    • (2013) PLoS One , vol.8 , pp. e63688
    • Kulmuni, J.1    Havukainen, H.2
  • 52
    • 84876969491 scopus 로고    scopus 로고
    • Ligands for pheromone-sensing neurons are not conformationally activated odorant binding proteins
    • Gomez-Diaz C, Reina JH, Cambillau C, Benton R. Ligands for pheromone-sensing neurons are not conformationally activated odorant binding proteins. PLoS Biol 2013, 11:e1001546.
    • (2013) PLoS Biol , vol.11 , pp. e1001546
    • Gomez-Diaz, C.1    Reina, J.H.2    Cambillau, C.3    Benton, R.4
  • 53
    • 0141726803 scopus 로고    scopus 로고
    • Ligand binding to six recombinant pheromone-binding proteins of Anteraea polyphemus and Anteraea pernyi
    • Maida R, Ziegelberger G, Kaissling KE. Ligand binding to six recombinant pheromone-binding proteins of Anteraea polyphemus and Anteraea pernyi. J Com Physiol B 2003, 173:565-573.
    • (2003) J Com Physiol B , vol.173 , pp. 565-573
    • Maida, R.1    Ziegelberger, G.2    Kaissling, K.E.3
  • 54
    • 65649125608 scopus 로고    scopus 로고
    • Characterisation of Bombyx mori odorant-binding proteins reveals that a general odorant-binding protein discriminates between sex pheromone components
    • Zhou JJ, Robertson G, He X, Dufour S, Hooper AM, Pickett JA, Keep NH, Field LM. Characterisation of Bombyx mori odorant-binding proteins reveals that a general odorant-binding protein discriminates between sex pheromone components. J Mol Biol 2009, 389:529-549.
    • (2009) J Mol Biol , vol.389 , pp. 529-549
    • Zhou, J.J.1    Robertson, G.2    He, X.3    Dufour, S.4    Hooper, A.M.5    Pickett, J.A.6    Keep, N.H.7    Field, L.M.8
  • 56
    • 0842281552 scopus 로고    scopus 로고
    • Revisiting the odorant-binding protein LUSH of Drosophila melanogaster: evidence for odour recognition and discrimination
    • Zhou JJ, Zhang GA, Huang W, Birkett MA, Field LM, Pickett JA, Pelosi P. Revisiting the odorant-binding protein LUSH of Drosophila melanogaster: evidence for odour recognition and discrimination. FEBS Lett 2004, 558:23-26.
    • (2004) FEBS Lett , vol.558 , pp. 23-26
    • Zhou, J.J.1    Zhang, G.A.2    Huang, W.3    Birkett, M.A.4    Field, L.M.5    Pickett, J.A.6    Pelosi, P.7
  • 57
    • 45449113774 scopus 로고    scopus 로고
    • Activation of pheromone-sensitive neurons is mediated by conformational activation of pheromone-binding protein
    • Laughlin JD, Soo Ha T, Jones DNM, Smith DP. Activation of pheromone-sensitive neurons is mediated by conformational activation of pheromone-binding protein. Cell 2008, 133:255-1265.
    • (2008) Cell , vol.133 , pp. 255-1265
    • Laughlin, J.D.1    Soo Ha, T.2    Jones, D.N.M.3    Smith, D.P.4
  • 58
    • 0035827661 scopus 로고    scopus 로고
    • Revisiting the specificity of Mamestra brassicae and Antheraea polyphemus pheromone binding proteins with a fluorescence binding assay
    • Campanacci V, Krieger J, Bette S, Sturgis JN, Lartigue A, Cambillau C, Breer H, Tegoni M. Revisiting the specificity of Mamestra brassicae and Antheraea polyphemus pheromone binding proteins with a fluorescence binding assay. J Biol Chem 2001, 276:20078-20084.
    • (2001) J Biol Chem , vol.276 , pp. 20078-20084
    • Campanacci, V.1    Krieger, J.2    Bette, S.3    Sturgis, J.N.4    Lartigue, A.5    Cambillau, C.6    Breer, H.7    Tegoni, M.8
  • 59
    • 84866029268 scopus 로고    scopus 로고
    • Specificity determinants of the silkworm moth sex pheromone
    • Xu P, Hooper AM, Pickett JA, Leal WS. Specificity determinants of the silkworm moth sex pheromone. PLoS One 2012, 7:e44190.
    • (2012) PLoS One , vol.7 , pp. e44190
    • Xu, P.1    Hooper, A.M.2    Pickett, J.A.3    Leal, W.S.4
  • 61
    • 34249844953 scopus 로고    scopus 로고
    • Evolutionary dynamics of olfactory receptor genes in Drosophila species
    • Nozawa M, Nei M. Evolutionary dynamics of olfactory receptor genes in Drosophila species. PNAS 2007, 104:7122-7127.
    • (2007) PNAS , vol.104 , pp. 7122-7127
    • Nozawa, M.1    Nei, M.2
  • 62
    • 33644531584 scopus 로고    scopus 로고
    • Brood stimulation controls the phasic reproductive cycle of the parthenogenetic ant Cerapachys biroi
    • Ravary F, Jahyny B, Jaisson P. Brood stimulation controls the phasic reproductive cycle of the parthenogenetic ant Cerapachys biroi. Insect Soc 2006, 53:20-26.
    • (2006) Insect Soc , vol.53 , pp. 20-26
    • Ravary, F.1    Jahyny, B.2    Jaisson, P.3
  • 63
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 66
    • 84874214846 scopus 로고    scopus 로고
    • Transcriptomic analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes
    • Ferreira PG, Patalano S, Chauhan R, Ffrench-Constant R, Gabaldon T, Guigo R, Sumner S. Transcriptomic analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes. Genome Biol 2013, 14:R20.
    • (2013) Genome Biol , vol.14 , pp. R20
    • Ferreira, P.G.1    Patalano, S.2    Chauhan, R.3    Ffrench-Constant, R.4    Gabaldon, T.5    Guigo, R.6    Sumner, S.7
  • 67
    • 33747863926 scopus 로고    scopus 로고
    • BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny
    • Suchard MA, Redelings BD. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics 2006, 22:2047-2048.
    • (2006) Bioinformatics , vol.22 , pp. 2047-2048
    • Suchard, M.A.1    Redelings, B.D.2
  • 68
    • 84865419331 scopus 로고    scopus 로고
    • Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses
    • Vieira FG, Forêt S, He X, Rozas J, Field LM, Zhou J-J. Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. PLoS One 2012, 7:e43034.
    • (2012) PLoS One , vol.7 , pp. e43034
    • Vieira, F.G.1    Forêt, S.2    He, X.3    Rozas, J.4    Field, L.M.5    Zhou, J.-J.6
  • 69
    • 74549184089 scopus 로고    scopus 로고
    • Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    • The Nasonia Genome Working Group
    • Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, . The Nasonia Genome Working Group Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 2010, 327:343-348. The Nasonia Genome Working Group.
    • (2010) Science , vol.327 , pp. 343-348
    • Werren, J.H.1    Richards, S.2    Desjardins, C.A.3    Niehuis, O.4    Gadau, J.5    Colbourne, J.K.6
  • 70
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucl Acids Res 2005, 33:511-518.
    • (2005) Nucl Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 71
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 2005, 21:2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 72
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O. An improved general amino acid replacement matrix. Mol Biol Evol 2008, 25:1307-1320.
    • (2008) Mol Biol Evol , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 73
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 2005, 21:456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 74
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 77
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 2005, 6:31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 78
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 79
    • 0037314098 scopus 로고    scopus 로고
    • R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson MJ. r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2002, 19:301-302.
    • (2002) Bioinformatics , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 80
    • 84880798867 scopus 로고    scopus 로고
    • Testing the museum versus cradle tropical biological diversity hypothesis: phylogeny, diversification, and ancestral biogeographic range evolution of the ants
    • Moreau CS, Bell CD. Testing the museum versus cradle tropical biological diversity hypothesis: phylogeny, diversification, and ancestral biogeographic range evolution of the ants. Evolution 2013, 67:2240-2257.
    • (2013) Evolution , vol.67 , pp. 2240-2257
    • Moreau, C.S.1    Bell, C.D.2
  • 81
    • 8544225780 scopus 로고    scopus 로고
    • Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
    • Wong WSW, Yang Z, Goldman N, Nielsen R. Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 2004, 168:1041-1051.
    • (2004) Genetics , vol.168 , pp. 1041-1051
    • Wong, W.S.W.1    Yang, Z.2    Goldman, N.3    Nielsen, R.4
  • 82
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WSW, Nielsen R. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol 2005, 22:1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3
  • 83
    • 3042842589 scopus 로고    scopus 로고
    • A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution
    • Bielawski JP, Yang Z. A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution. J Mol Evol 2004, 59:121-113.
    • (2004) J Mol Evol , vol.59 , pp. 121-1113
    • Bielawski, J.P.1    Yang, Z.2
  • 84
    • 84862892391 scopus 로고    scopus 로고
    • An improved likelihood ratio test for detecting site-specific functional divergence among clades of protein-coding genes
    • Weadick CJ, Chang BS. An improved likelihood ratio test for detecting site-specific functional divergence among clades of protein-coding genes. Mol Biol Evol 2012, 29:1297-1300.
    • (2012) Mol Biol Evol , vol.29 , pp. 1297-1300
    • Weadick, C.J.1    Chang, B.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.