Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

Database

Volumn 2009, Issue , 2009, Pages

  Gaudet, P ^a   Lane, L ^b   Fey, P ^a   Bridge, A ^b   Poux, S ^b   Auchincloss, A ^b   Axelsen, K ^b   Braconi Quintaje, S ^b   Boutet, E ^b   Brown, P ^c   Coudert, E ^b   Datta, R S ^d   De Lima, W C ^e   De Oliveira Lima, T ^b   Duvaud, S ^b   Farriol Mathis, N ^b   Ferro Rojas, S ^b   Feuermann, M ^b   Gateau, A ^b   Hinz, U ^b   Hulo, C ^b   James, J ^b   Jimenez, S ^b   Jungo, F ^b   Keller, G ^b   Lemercier, P ^b   Lieberherr, D ^b   Moinat, M ^b   Nikolskaya, A ^f   Pedruzzi, I ^b   Rivoire, C ^b   Roechert, B ^b   Schneider, M ^b   Stanley, E ^b   Tognolli, M ^b   Sjolander K ^e   Bougueleret, L ^b   Chisholm, R L ^a   Bairoch, A ^b,e   more..

^a NORTHWESTERN UNIVERSITY   (United States)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^c WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^d University of California at Berkeley   (United States)

^e UNIVERSITY OF GENEVA   (Switzerland)

^f GEORGETOWN UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84908100334     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bap016     Document Type: Article

References (9)

1. Gaudet, P., Fey, P. and Chisholm, R.L. (2009) Dictyostelium discoideum: the social ameba. In. Emerging Model Organisms: A Laboratory Manual, Vol. 1. Cold Spring Harbor Laboratory press, Cold Spring Harbor, NY.
2. Baldauf, S.L., Roger, A.J., Wenk-Siefert, I. et al. (2000) A kingdomlevel phylogeny of eukaryotes based on combined protein data. Science, 290, 972-977.
3. Eichinger, L., Pachebat, J.A., Glockner, G. et al. (2005) The genome of the social amoeba Dictyostelium discoideum. Nature, 435, 43-57.
4. The Universal Protein Resource (UniProt) (2009) Nucleic Acids Res., 37, D169-D174.
5. Lewis, S.E., Searle, S.M., Harris, N. et al. (2002) Apollo: a sequence annotation editor. Genome Biol., 3, RESEARCH0082.
6. Fey, P., Gaudet, P., Curk, T. et al. dictyBase-a Dictyostelium bioinformatics resource update. Nucleic Acids Res., 37, D515-D519.
7. Krishnamurthy, N., Brown, D.P., Kirshner, D. et al. (2006) PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification. Genome Biol., 7, R83.
8. Datta, R.S., Meacham, C., Samad, B. et al. (2009) Berkeley PHOG: PhyloFacts orthology group prediction web server. Nucleic Acids Res., 37, W84-W89.
9. Lima, T., Auchincloss, A.H., Coudert, E. et al. HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot. Nucleic Acids Res., 37, D471-D478.