Segmentation of occluded hematopoietic stem cells from tracking

2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014

Volumn , Issue , 2014, Pages 5510-5513

  Mankowski, Walter C ^a   Winter, Mark R ^a   Wait, Eric ^a   Lodder, Mels ^b   Schumacher, Ton ^c   Naik, Shalin H ^d   Cohen, Andrew R ^a  

^a Drexel University   (United States)

^b THE OHIO STATE UNIVERSITY WEXNER MEDICAL CENTER   (United States)

^c NETHERLANDS CANCER INSTITUTE   (Netherlands)

^d WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH   (Australia)

Author keywords

dendritic cell precursor; hematopoietic stem cell segmentation; segmentation from tracking; stem cell lineaging

Indexed keywords

CELL PROLIFERATION; CLONE CELLS; CYTOLOGY; IMAGE SEGMENTATION; MONTE CARLO METHODS;

DENDRITIC CELLS; HEMATOPOIETIC STEM CELLS; LONG-TERM IMAGING; MONTE CARLO TECHNIQUES; NEW APPROACHES; PROLIFERATING CELLS; SECONDARY CELLS; TIME-LAPSE MICROSCOPY;

STEM CELLS;

ALGORITHM; ANIMAL; C57BL MOUSE; CELL PROLIFERATION; CELL TRACKING; CYTOLOGY; HEMATOPOIETIC STEM CELL; HUMAN; IMAGE PROCESSING; PROCEDURES; STROMA CELL;

ALGORITHMS; ANIMALS; CELL PROLIFERATION; CELL TRACKING; HEMATOPOIETIC STEM CELLS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICE, INBRED C57BL; STROMAL CELLS;

EID: 84907960659     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/EMBC.2014.6944874     Document Type: Conference Paper

References (11)

1. A.R. Cohen, C.S. Bjornsson, S. Temple, G. Banker, and B. Roysam, "Automatic summarization of changes in biological image sequences using algorithmic information theory," IEEE Trans Pattern Anal Mach Intel, Vol. 31, no. 8, pp. 1386-1403, 2009.
2. M.R. Winter, E. Wait, B. Roysam, S.K. Goderie, R.A.N. Ali, E. Kokovay, S. Temple, and A.R. Cohen, "Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing," Nature Protocols, Vol. 6, no. 12, pp. 1942-1952, 2011.
3. M.R. Winter, C. Fang, G. Banker, B. Roysam, and A.R. Cohen, "Axonal transport analysis using multitemporal association tracking," Int J Comput Biol Drug Des, Vol. 5, no. 1, pp. 35-48, 2012.
4. S.H. Naik, P. Sathe, H.-Y. Park, D. Metcalf, A.I. Proietto, A. Dakic, S. Carotta, M. O'Keeffe, M. Bahlo, and A. Papenfuss, "Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo," Nature Immunology, Vol. 8, no. 11, pp. 1217-1226, 2007.
5. S.H. Naik, L. Perie, E. Swart, C. Gerlach, N. van Rooij, R.J. de Boer, and T.N. Schumacher, "Diverse and heritable lineage imprinting of early haematopoietic progenitors," Nature, Vol. 496, no. 7444, pp. 229-232, 2013.
6. N. Otsu, "A threshold selection method from gray-level histograms," IEEE Trans Syst Man, Cybern, Vol. 9, no. 1, pp. 62-66, 1979.
7. R.C. Gonzalez, R.E. Woods, and S.L. Eddins, Digital Image processing using MATLAB, Gatesmark, 2nd edition, 2009.
8. A.R. Cohen, F.L. Gomes, B. Roysam, and M. Cayouette, "Computational prediction of neural progenitor cell fates," Nat Methods, Vol. 7, no. 3, pp. 213-8, 2010.
9. R. Tibshirani, G. Walther, and T. Hastie, "Estimating the number of clusters in a data set via the gap statistic," J R Stat Soc: Series B, Vol. 63, no. 2, pp. 411-423, 2001.
10. R. Michel, R. Steinmeyer, M. Falk, and G.S. Harms, "A new detection algorithm for image analysis of single, fluorescence-labeled proteins in living cells," Microsc Res Tech, Vol. 70, no. 9, pp. 763-70, 2007.
11. T.J. Atherton and D.J. Kerbyson, "Size invariant circle detection," Image and Vision Computing, Vol. 17, no. 11, pp. 795-803, 1999.