A second-generation genetic linkage map for bighead carp (Aristichthys nobilis) based on microsatellite markers

Animal Genetics

Volumn 45, Issue 5, 2014, Pages 699-708

  Zhu, C ^a,b   Tong, J ^a   Yu, X ^a   Guo, W ^a,b   Wang, X ^a,b   Liu, H ^a,b   Feng, X ^a,b   Sun, Y ^a,b   Liu, L ^a,b   Fu, B ^a,b  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Aristichthys nobilis; Genetic map; Interspecific hybrids; Pseudo testcross; Simple sequence repeats

Indexed keywords

GENETIC MARKER; MICROSATELLITE DNA;

ANIMAL; CHROMOSOME MAP; CROSS BREEDING; CYPRINIFORMES; FEMALE; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOTYPE; MALE;

ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; CYPRINIDAE; FEMALE; GENETIC LINKAGE; GENETIC MARKERS; GENOTYPE; MALE; MICROSATELLITE REPEATS;

EID: 84907896086     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/age.12194     Document Type: Article

References (56)

1. Bozhko S.I., Horvath A. & Meszaros B. (1976) Karyological examinations for four species of Cyprinidae from Hungary. Acta Biologica Debrecina 13, 237-54.
2. Cervera M., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Van Slycken J., Van Montagu M. & Boerjan W. (2001) Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158, 787-809.
3. Chakravarti A., Lasher L.K. & Reefer J.E. (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128, 175-82.
4. Cheng L., Liao X., Yu X. & Tong J. (2007) Development of EST-SSRs by an efficient FIASCO-based strategy: a case study in rare minnow (Gobiocyrpis rarus). Animal Biotechnology 18, 143-52.
5. Cheng L., Liu L., Yu X. & Tong J. (2008) Sixteen polymorphic microsatellites in bighead carp (Aristichthys nobilis) and cross-amplification in silver carp (Hypophthalmichthys molitrix). Molecular Ecology Resources 8, 656-8.
6. Cheng L., Liu L., Yu X., Wang D. & Tong J. (2010) A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers. Animal Genetics 41, 191-8.
7. Chistiakov D.A., Hellemans B. & Volckaert F.A.M. (2006) Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics. Aquaculture 255, 1-29.
8. Chistiakov D.A., Tsigenopoulos C.S., Lagnel J., Guo Y.M., Hellemans B., Haley C.S., Volckaert F.A. & Kotoulas G. (2008) A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L. Animal Genetics 39, 623-34.
9. Clifford S.L., Meginnity P. & Feguson A. (1998) Genetic changes in an Atlantic salmon population resulting from escaped juvenile farm salmon. Journal of Fish Biology 52, 118-27.
10. Coimbra M.R.M., Kobayashi K., Koretsugu S., Hasegawa O., Ohara E., Ozaki A., Sakamoto T., Naruse K. & Okamoto N. (2003) A genetic linkage map of the Japanese flounder, Paralichthys olivaceus. Aquaculture 220, 203-18.
11. Dietrich W.F., Miller J., Steen R., Merchant M.A., DamronBoles D., Husain Z., Dredge R., Daly M.J., Ingalls K.A. & O'Connor T.J. (1996) A comprehensive genetic map of the mouse genome. Nature 380, 149-52.
12. Faris J.D., Laddomada B. & Gill B.S. (1998) Molecular mapping of segregation distortion loci in Aegilops tauschii. Genetics 149, 319-27.
13. FAO (2010) Fisheries & Aquaculture - Global Statistical Collections. Available at: http://www.fao.org/fishery/statistics/en.
14. Fishman L., Kelly A.J., Morgan E. & Willis J.H. (2001) A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159, 1701-16.
15. Fuji K., Kobayashi K., Hasegawa O., Coimbra M.R.M., Sakamoto T. & Okamoto N. (2006) Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus). Aquaculture 254, 203-10.
16. Gheyas A.A., Cairney M., Gilmour A.E., Sattar M.A., Das T.K., Mcandrew B.J., Penman D.J. & Taggart J.B. (2006) Characterization of microsatellite loci in silver carp (Hypophthalmichthys molitrix), and cross-amplification in other cyprinid species. Molecular Ecology Notes 6, 656-9.
17. Gold J.R. (1979) Cytogenetics. In: Fish Physiology (Ed. by W.S. Hoar, D.J. Randall & J.R. Brett), Volume VIII, Chapter 7: pp. 353-405. Academic Press, New York and London.
18. Guo S.S., Zou G.W. & Yang G.P. (2009) Development of microsatellite DNA markers of grass carp (Ctenopharyngodon idella) and their cross-species application in black carp (Mylopharyngodon piceus). Conservation Genetics 10, 1515-9.
19. Guo X., Li Q., Wang Q.Z. & Kong L.F. (2012) Genetic mapping and QTL analysis of growth-related traits in the Pacific oyster. Marine Biotechnology (NY) 14, 218-26.
20. Guo W., Tong J., Yu X. et al. (2013) A second generation genetic linkage map for silver carp (Hypophthalmichehys molitrix) using microsatellite markers. Aquaculture 412-413, 97-106.
21. Haldane J.B.S. (1922) Sex ratio and unisexual sterility in hybrid animal. Journal of Genetics 12, 101-9.
22. Kelly P.D., Chu F., Woods I.G. et al. (2000) Genetic linkage mapping of zebrafish genes and ESTs. Genome Research 10, 558-67.
23. Kocher T.D., Lee W.J., Sobolewska H., Penman D. & McAndrew B. (1998) A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148, 1225-32.
24. Kolar C.S., Chapman D.C., Courtenay W.R., House J.C.M., Williams J.D. & Jennings D.P. (2005) Asian Carps of the Genus Hypophthalmichthys (Pisces, Cyprinidae) - A Biological Synopsis and Environmental Risk Assessment. Report to U.S. Fish and Wildlife Service per Interagency Agreement 94400-3-0128.
25. Krutovskii K.V., Vollmer S.S., Sorensen F.C., Adams W.T., Knapp S.J. & Strauss S.H. (1998) RAPD genome maps of Douglas-fir. Journal of Heredity 89, 197-205.
26. Lallias D., Beaumont A.R., Haley C.S., Boudry P., Heurtebise S. & Lapegue S. (2007a) A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers. Animal Genetics 38, 560-8.
27. Lallias D., Lapegue S., Hecquet C., Boudry P. & Beaumont A.R. (2007b) AFLP-based genetic linkage maps of the blue mussel (Mytilus edulis). Animal Genetics 38, 340-9.
28. Lee B.Y., Lee W.J., Streelman J.T., Carleton K.L., Howe A.E., Hulata G., Slettan A., Stern J.E., Terai Y. & Kocher T.D. (2005) A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170, 237-44.
29. Li L. & Guo X. (2004) AFLP-based genetic linkage maps of the pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology (NY) 6, 26-36.
30. Li L., Xiang J., Liu X., Zhang Y., Dong B. & Zhang X. (2005) Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers. Aquaculture 245, 63-73.
31. Liao M., Zhang L., Yang G., Zhu M., Wang D., Wei Q., Zou G. & Chen D. (2007a) Development of silver carp (Hypophthalmichthys molitrix) and bighead carp (Aristichthys nobilis) genetic maps using microsatellite and AFLP markers and a pseudo-testcross strategy. Animal Genetics 38, 364-70.
32. Liao M., Yang G., Wang X., Wang D. & Zou G. (2007b) Development of microsatellite DNA markers of silver carp (Hypophthalmichthys molitrix) and their cross-species application in bighead carp (Aristichthys nobilis). Molecular Ecology Notes 7, 95-9.
33. Lie O., Slettan A., Lingaas F., Olsaker I., Hordvik I. & Refstie T. (1994) Haploid gynogenesis: a powerful strategy for linkage analysis in fish. Animal Biotechnology 5, 33-45.
34. Liu S.P., Qiu S.L., Chen D.Q. & Huang M.G. (1997) Protection and rational utilization of the germplasm resources of the four major Chinese carps in the Yangtze River system. Resources and Environment in the Yangtze Valley 6, 127-31 (in Chinese with English abstract).
35. Liu Z., Karsi A., Li P., Cao D. & Dunham R. (2003) An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165, 687-94.
36. Liu L., Li J., Liu P., Zhao F.Z., Gao B.Q. & Du Y. (2012) A genetic linkage map of swimming crab (Portunus trituberculatus) based on SSR. Aquaculture, 344-349, 66-81.
37. Moen T., Hoyheim B., Munck H. & Gomez-Raya L. (2004) A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Animal Genetics 35, 81-92.
38. Nomura K., Ozaki A., Morishima K., Yoshikawa Y., Tanaka H., Unuma T., Ohta H. & Arai K. (2011) A genetic linkage map of the Japanese eel (Anguilla japonica) based on AFLP and microsatellite markers. Aquaculture 310, 329-42.
39. O'Malley K.G., Sakamoto T., Danzmann R. & Ferguson M. (2003) Quantitative trait loci for spawning time and body weight in rainbow trout: testing for conserved effects across ancestrally duplicated chromosomes. Journal of Heredity 94, 273-84.
40. Portnoy D.S., Renshaw M.A., Hollenbeck C.M. & Gold J.R. (2010) A genetic linkage map of red drum, Sciaenops ocellatus. Animal Genetics 41, 630-41.
41. Rexroad C.E. 3rd, Palti Y., Gahr S.A. & Vallejo R.L. (2008) A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Genetics 9, 74.
42. Sakamoto T., Danzmann R.G., Gharbi K. et al. (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331-45.
43. Sambrook J. & Russell D.W. (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York.
44. Van Ooijen J.W. & Voorrips R.E. (2001) JOINMAP-3.0: Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen, the Netherlands.
45. Voorrips R.E. (2002) MAPCHART: software for the presentation of linkage maps and QTLs. Journal of Genetics 93, 77-8.
46. Wang C.M., Bai Z.Y., He X.P., Lin G., Xia J.H., Sun F., Lo L.C., Feng F., Zhu Z.Y. & Yue G.H. (2011) A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer. BMC Genomics 12, 174.
47. Woods I.G., Kelly P.D., Chu F., Ngo-Hazelet P., Yan Y., Huang H., Postlethwait J.H. & Talbot W.S. (2000) A comparative map of the zebrafish genome. Genome Research 10, 1903-14.
48. Xia J.H., Liu F., Zhu Z.Y., Fu J., Feng J., Li J. & Yue G.H. (2010) A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs. BMC Genomics 11, 135.
49. Xu Y., Zhang X., Zheng X., Kuang Y., Lu C., Cao D., Yin S., Li C. & Sun X. (2012) Studies on quantitative trait loci related to superoxide dismutase in mirror carp (Cyprinus carpio L.). Aquaculture Research 2012, 1-12.
50. Young W.P., Wheeler P.A., Coryell V.H., Keim P. & Thorgaard G.H. (1998) A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148, 839-50.
51. Yu Z. & Guo X. (2003) Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biological Bulletin 204, 327-38.
52. Yu X.J., Zhou T. & Li Y.C. (1989) Chromosomes of Chimese Fresh-Water Fishes. Science Press, Beijing.
53. Zan R. & Song Z. (1980) Analysis and comparison between the karyotypes of Cyprinus carpio and Carassius auratus as well as Aristichthys nobilis and Hypophthalmichthys molitrix. Acta Genetica Sinica 7, 72-6 (in Chinese with English abstract).
54. Zhang L., Yang G., Guo S., Wei Q. & Zou G. (2010) Construction of a genetic linkage map for silver carp (Hypophthalmichthys molitrix). Animal Genetics 41, 523-30.
55. Zhang L., Yang G., Zou G., Wei Qi., Wang J., Zhang P., Liu X. & Yang J. (2011) Densification and syntenic comparison of parental linkage maps in interspecific hybrids of silver carp and bighead carp. Journal of Fishery Sciences of China 18, 256-66 (in Chinese with English abstract).
56. Zhu X.D., Geng B., Li J. & Sun X.W. (2007) Analysis of genetic diversity among silver carp populations in the middle and lower Yangtze River using thirty microsatellite markers. Hereditas (Beijing) 29, 705-13 (in Chinese with English abstract).