-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol, 11, R106.
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
2
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
Bullard, J. et al. (2010) Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics, 11, 94.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.1
-
3
-
-
33646147811
-
MaSigPro: A method to identify significantly differential expression profiles in time-course microarray experiments
-
Conesa, A. et al. (2006) maSigPro: a method to identify significantly differential expression profiles in time-course microarray experiments. Bioinformatics, 22, 1096-1102.
-
(2006)
Bioinformatics
, vol.22
, pp. 1096-1102
-
-
Conesa, A.1
-
5
-
-
84878969764
-
Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts
-
Hacquard, S. et al. (2013) Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proc. Natl Acad. Sci. USA, 110, 2219-2228.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 2219-2228
-
-
Hacquard, S.1
-
6
-
-
57249086249
-
Transcriptional profiling of mRNA expression in the mouse distal colon
-
Hoogerwerf, W.A. et al. (2008) Transcriptional profiling of mRNA expression in the mouse distal colon. Gastroenterology, 135, 2019-2029.
-
(2008)
Gastroenterology
, vol.135
, pp. 2019-2029
-
-
Hoogerwerf, W.A.1
-
7
-
-
37549071528
-
Spatial differentiation in the vegetative mycelium of Aspergillus niger
-
Levin, A. et al. (2007) Spatial differentiation in the vegetative mycelium of Aspergillus niger. Eukaryot. Cell, 6, 2311-2322.
-
(2007)
Eukaryot. Cell
, vol.6
, pp. 2311-2322
-
-
Levin, A.1
-
8
-
-
84893242996
-
RNA-seq differential expression studies: More sequence or more replication?
-
Liu, Y. et al. (2014) RNA-seq differential expression studies: more sequence or more replication? Bioinformatics, 30, 301-304.
-
(2014)
Bioinformatics
, vol.30
, pp. 301-304
-
-
Liu, Y.1
-
9
-
-
84870586000
-
Conservation of NLR-triggered immunity across plant lineages
-
Maekawa, T. et al. (2012) Conservation of NLR-triggered immunity across plant lineages. Proc. Natl Acad. Sci. USA, 109, 20119-20123.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 20119-20123
-
-
Maekawa, T.1
-
11
-
-
77954339096
-
Babelomics: An integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
-
Medina, I. et al. (2010) Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res., 38, W210-W213.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W210-W213
-
-
Medina, I.1
-
12
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A. et al. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods, 5, 621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
-
13
-
-
67649100479
-
Functional assessment of time course microarray data
-
Nueda, MJ. et al. (2009) Functional assessment of time course microarray data. BMC Bioinformatics, 10 (Suppl. 6), S9.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. S9
-
-
Nueda, M.J.1
-
14
-
-
77954273698
-
Serial Expression Analysis: A web tool for the analysis of serial gene expression data
-
Nueda, MJ. et al. (2010) Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Res., 3822, 239-245.
-
(2010)
Nucleic Acids Res.
, vol.3822
, pp. 239-245
-
-
Nueda, M.J.1
-
15
-
-
84863569198
-
ARSyN: A method for the identification and removal of systematic noise in multifactorial time course microarray experiments
-
Nueda, MJ. et al. (2012) ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments. Biostatistics, 13, 553-566.
-
(2012)
Biostatistics
, vol.13
, pp. 553-566
-
-
Nueda, M.J.1
-
16
-
-
83455238345
-
GC-content normalization for RNA-Seq data
-
Risso, D. et al. (2011) GC-content normalization for RNA-Seq data. BMC Bioinformatics, 12, 480.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 480
-
-
Risso, D.1
-
17
-
-
84871946825
-
Streaming fragment assignment for real-time analysis of sequencing experiments
-
Roberts, A. and Pachter, L. (2013) Streaming fragment assignment for real-time analysis of sequencing experiments. Nat. Methods, 10, 71-73.
-
(2013)
Nat. Methods
, vol.10
, pp. 71-73
-
-
Roberts, A.1
Pachter, L.2
-
18
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-Seq data
-
Robinson, M.D. and Oshlack, A. (2010) A scaling normalization method for differential expression analysis of RNA-Seq data. Genome Biol., 11, R25.
-
(2010)
Genome Biol.
, vol.11
, pp. R25
-
-
Robinson, M.D.1
Oshlack, A.2
-
19
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis
-
Robinson, M.D. et al. (2010) edgeR: a Bioconductor package for differential expression analysis. Bioinformatics, 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
-
20
-
-
84892728434
-
Sequencing depth and coverage: Key considerations in genomic analyses
-
Sims, D. et al. (2014) Sequencing depth and coverage: key considerations in genomic analyses. Nat. Rev. Genet., 15, 121-132.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 121-132
-
-
Sims, D.1
-
21
-
-
83055192078
-
Differential expression in RNAseq: A matter of depth
-
Tarazona, S. et al. (2011) Differential expression in RNAseq: a matter of depth. Genome Res., 21, 2213-2223.
-
(2011)
Genome Res.
, vol.21
, pp. 2213-2223
-
-
Tarazona, S.1
-
22
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell, C. et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc, 7, 562-578.
-
(2012)
Nat. Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
-
23
-
-
33847335001
-
Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance
-
Terol, J. et al. (2007) Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics, 8, 31.
-
(2007)
BMC Genomics
, vol.8
, pp. 31
-
-
Terol, J.1
|