Prevalence and genetic diversity of noroviruses in outpatient pediatric clinics in Beijing, China 2010-2012

Infection, Genetics and Evolution

Volumn 28, Issue , 2014, Pages 71-77

  Jia, Li ping ^a   Qian, Yuan ^a   Zhang, You ^a   Deng, Li ^a   Liu, Li ying ^a   Zhu, Ru nan ^a   Zhao, Lin qing ^a   Huang, Hui ^a   Zheng, Chong guang ^a   Dong, Hui jin ^a  

^a CAPITAL INSTITUTE OF PEDIATRICS   (China)

Author keywords

Acute gastroenteritis; Children; China; Genotype analysis; Norovirus

Indexed keywords

ACUTE GASTROENTERITIS; AGE DISTRIBUTION; ARTICLE; CAPSID GENE; CHILD; CHINA; FECES ANALYSIS; FEMALE; GENETIC VARIABILITY; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; MALE; NONHUMAN; NOROVIRUS; NOROVIRUS INFECTION; NUCLEOTIDE SEQUENCE; OUTPATIENT; PREVALENCE; SEASONAL VARIATION; SEQUENCE ANALYSIS; STRUCTURAL GENE; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS IDENTIFICATION; CALICIVIRIDAE INFECTIONS; CLASSIFICATION; DNA SEQUENCE; GENETICS; HISTORY; INFANT; MOLECULAR GENETICS; OUTPATIENT DEPARTMENT; PHYLOGENY; PRESCHOOL CHILD; SEASON; VIROLOGY;

VIRUS RNA;

CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; CHINA; FEMALE; GENES, VIRAL; GENETIC VARIATION; GENOTYPE; HISTORY, 21ST CENTURY; HUMANS; INFANT; MALE; MOLECULAR SEQUENCE DATA; NOROVIRUS; OUTPATIENT CLINICS, HOSPITAL; PHYLOGENY; PREVALENCE; RNA, VIRAL; SEASONS; SEQUENCE ANALYSIS, DNA;

EID: 84907477454     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.09.006     Document Type: Article

References (40)

1. Arana A., Cilla G., Montes M., Gomariz M., Perez-Trallero E. Genotypes, recombinant forms, and variants of norovirus GII.4 in Gipuzkoa (Basque Country, Spain), 2009-2012. PLoS One 2014, 9:e98875.
2. Belliot G., Kamel A.H., Estienney M., Ambert-Balay K., Pothier P. Evidence of emergence of new GGII.4 norovirus variants from gastroenteritis outbreak survey in France during the 2007-to-2008 and 2008-to-2009 winter seasons. J. Clin. Microbiol. 2010, 48:994-998.
3. Bernard H., Hohne M., Niendorf S., Altmann D., Stark K. Epidemiology of norovirus gastroenteritis in Germany 2001-2009: eight seasons of routine surveillance. Epidemiol. Infect. 2014, 142:63-74.
4. Boon D., Mahar J.E., Abente E.J., Kirkwood C.D., Purcell R.H., Kapikian A.Z., Green K.Y., Bok K. Comparative evolution of GII.3 and GII.4 norovirus over a 31-year period. J. Virol. 2011, 85:8656-8666.
5. Bull R.A., Eden J.S., Rawlinson W.D., White P.A. Rapid evolution of pandemic noroviruses of the GII.4 lineage. PLoS Pathog. 2010, 6:e1000831.
6. Bull R.A., Tanaka M.M., White P.A. Norovirus recombination. J. Gen. Virol. 2007, 88:3347-3359.
7. Bull R.A., Tu E.T., McIver C.J., Rawlinson W.D., White P.A. Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis. J. Clin. Microbiol. 2006, 44:327-333.
8. Centers for Disease and Prevention Surveillance for foodborne disease outbreaks-United States, 2009-2010. MMWR Morb. Mortal. Wkly Rep. 2013, 62:41-47.
9. Chen Y., Li Z., Han D., Cui D., Chen X., Zheng S., Yu F., Liu J., Lai S., Yan Y., Lin Z., Shi Z., Wu T., Li L., Yang W. Viral agents associated with acute diarrhea among outpatient children in southeastern China. Pediatr. Infect. Dis. J. 2013, 32:e285-290.
10. Chhabra P., Dhongade R.K., Kalrao V.R., Bavdekar A.R., Chitambar S.D. Epidemiological, clinical, and molecular features of norovirus infections in western India. J. Med. Virol. 2009, 81:922-932.
11. Eden J.S., Tanaka M.M., Boni M.F., Rawlinson W.D., White P.A. Recombination within the pandemic norovirus GII.4 lineage. J. Virol. 2013, 87:6270-6282.
12. Farkas T., Zhong W.M., Jing Y., Huang P.W., Espinosa S.M., Martinez N., Morrow A.L., Ruiz-Palacios G.M., Pickering L.K., Jiang X. Genetic diversity among sapoviruses. Arch. Virol. 2004, 149:1309-1323.
13. Fonager J., Barzinci S., Fischer T.K. Emergence of a new recombinant Sydney 2012 norovirus variant in Denmark, 26 December 2012 to 22 March 2013. Euro Surveill. 2013, 18.
14. Gao Y., Jin M., Cong X., Duan Z., Li H.Y., Guo X., Zuo Y., Zhang Y., Zhang Y., Wei L. Clinical and molecular epidemiologic analyses of norovirus-associated sporadic gastroenteritis in adults from Beijing, China. J. Med. Virol. 2011, 83:1078-1085.
15. Glass R.I., Parashar U.D., Estes M.K. Norovirus gastroenteritis. N Engl. J. Med. 2009, 361:1776-1785.
16. Green K.Y., Chanock R.M., Kapikian A.Z. Caliciviridae: the noroviruses. Fields Virology 2001, 949-979. Lippincott Williams & Wilkins, Philadelphia, PA. fifth ed. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
17. Jia L.P., Qian Y., Zhang Y., Chen D.M., Gao Y., Xu Q. [Norovirus associated outbreaks of acute gastroenteritis in hospitals in Beijing in late 2006]. Zhonghua liu xing bing xue za zhi 2007, 28:213-217.
18. Kaplan N.M., Kirby A., Abd-Eldayem S.A., Dove W., Nakagomi T., Nakagomi O., Cunliffe N.A. Detection and molecular characterisation of rotavirus and norovirus infections in Jordanian children with acute gastroenteritis. Arch. Virol. 2011, 156:1477-1480.
19. Kojima S., Kageyama T., Fukushi S., Hoshino F.B., Shinohara M., Uchida K., Natori K., Takeda N., Katayama K. Genogroup-specific PCR primers for detection of Norwalk-like viruses. J. Virol. Methods 2002, 100:107-114.
20. Kroneman A., Vennema H., Deforche K., v d Avoort H., Penaranda S., Oberste M.S., Vinje J., Koopmans M. An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 2011, 51:121-125.
21. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
22. Lu L., Zhong H., Xu M., Su L., Cao L., Dong N., Xu J. Molecular epidemiology of human calicivirus infections in children with acute diarrhea in Shanghai: a retrospective comparison between inpatients and outpatients treated between 2006 and 2011. Arch. Virol. 2014, 159:1613-1621.
23. Mahar J.E., Bok K., Green K.Y., Kirkwood C.D. The importance of intergenic recombination in norovirus GII.3 evolution. J. Virol. 2013, 87:3687-3698.
24. Matthews J.E., Dickey B.W., Miller R.D., Felzer J.R., Dawson B.P., Lee A.S., Rocks J.J., Kiel J., Montes J.S., Moe C.L., Eisenberg J.N., Leon J.S. The epidemiology of published norovirus outbreaks: a review of risk factors associated with attack rate and genogroup. Epidemiol. Infect. 2012, 140:1161-1172.
25. Nahar S., Afrad M.H., Matthijnssens J., Rahman M.Z., Momtaz Z., Yasmin R., Jubair M., Faruque A.S., Choudhuri M.S., Azim T., Rahman M. Novel intergenotype human norovirus recombinant GII.16/GII.3 in Bangladesh. Infect. Genet. Evol. 2013, 20:325-329.
26. Noel J.S., Fankhauser R.L., Ando T., Monroe S.S., Glass R.I. Identification of a distinct common strain of "Norwalk-like viruses" having a global distribution. J. Infect. Dis. 1999, 179:1334-1344.
27. Patel M.M., Widdowson M.A., Glass R.I., Akazawa K., Vinje J., Parashar U.D. Systematic literature review of role of noroviruses in sporadic gastroenteritis. Emerg. Infect. Dis. 2008, 14:1224-1231.
28. Payne D.C., Vinje J., Szilagyi P.G., Edwards K.M., Staat M.A., Weinberg G.A., Hall C.B., Chappell J., Bernstein D.I., Curns A.T., Wikswo M., Shirley S.H., Hall A.J., Lopman B., Parashar U.D. Norovirus and medically attended gastroenteritis in U.S. children. N. Engl. J. Med. 2013, 368:1121-1130.
29. Phan T.G., Kuroiwa T., Kaneshi K., Ueda Y., Nakaya S., Nishimura S., Yamamoto A., Sugita K., Nishimura T., Yagyu F., Okitsu S., Muller W.E., Maneekarn N., Ushijima H. Changing distribution of norovirus genotypes and genetic analysis of recombinant GIIb among infants and children with diarrhea in Japan. J. Med. Virol. 2006, 78:971-978.
30. Siebenga J.J., Vennema H., Renckens B., de Bruin E., van der Veer B., Siezen R.J., Koopmans M. Epochal evolution of GGII.4 norovirus capsid proteins from 1995 to 2006. J. Virol. 2007, 81:9932-9941.
31. Siebenga J.J., Vennema H., Zheng D.P., Vinje J., Lee B.E., Pang X.L., Ho E.C., Lim W., Choudekar A., Broor S., Halperin T., Rasool N.B., Hewitt J., Greening G.E., Jin M., Duan Z.J., Lucero Y., O'Ryan M., Hoehne M., Schreier E., Ratcliff R.M., White P.A., Iritani N., Reuter G., Koopmans M. Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007. J. Infect. Dis. 2009, 200:802-812.
32. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
33. Tang M.B., Chen C.H., Chen S.C., Chou Y.C., Yu C.P. Epidemiological and molecular analysis of human norovirus infections in Taiwan during 2011 and 2012. BMC Infect. Dis. 2013, 13:338.
34. Tu E.T., Bull R.A., Greening G.E., Hewitt J., Lyon M.J., Marshall J.A., McIver C.J., Rawlinson W.D., White P.A. Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. Clin. Infect. Dis. 2008, 46:413-420.
35. Van Beek J., Ambert-Balay K., Botteldoorn N., Eden J.S., Fonager J., Hewitt J., Iritani N., Kroneman A., Vennema H., Vinje J., White P.A., Koopmans M., NoroNet Indications for worldwide increased norovirus activity associated with emergence of a new variant of genotype II.4, late 2012. Euro Surveill. 2013, 18:8-9.
36. Vinje J., Hamidjaja R.A., Sobsey M.D. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J. Virol. Methods 2004, 116:109-117.
37. Vongpunsawad S., Venkataram Prasad B.V., Estes M.K. Norwalk virus minor capsid protein VP2 associates within the VP1 shell domain. J. Virol. 2013, 87:4818-4825.
38. Yen C., Wikswo M.E., Lopman B.A., Vinje J., Parashar U.D., Hall A.J. Impact of an emergent norovirus variant in 2009 on norovirus outbreak activity in the United States. Clin. Infect. Dis. 2011, 53:568-571.
39. Yu Y., Yan S., Li B., Pan Y., Wang Y. Genetic diversity and distribution of human norovirus in China (1999-2011). BioMed Res. Int. 2014, 2014:196169.
40. Zheng D.P., Ando T., Fankhauser R.L., Beard R.S., Glass R.I., Monroe S.S. Norovirus classification and proposed strain nomenclature. Virology 2006, 346:312-323.