The taming of reconcile as a biomedical coreference resolver

Proceedings of BioNLP Shared Task 2011 Workshop at the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, ACL HLT 2011

Volumn , Issue , 2011, Pages 89-93

  Kim, Youngjun ^a   Riloff, Ellen ^a   Gilbert, Nathan ^a  

^a Department of Electrical and Computer Engineering   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NATURAL LANGUAGE PROCESSING SYSTEMS;

BIOMEDICAL DOMAIN; COREFERENCE; COREFERENCE RESOLUTION; F-SCORE; PRE-PROCESSING;

PROTEINS;

EID: 84907375205     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (18)

1. Jenny Finkel, Shipra Dingare, Christopher D Manning, Malvina Nissim, Beatrice Alex, and Claire Grover. 2005. Exploring the Boundaries: Gene and Protein Identification in Biomedical Text. BMC Bioinformatics. 6:S5.
2. Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, and Jun’ichi Tsujii. 2011. Overview of BioNLP Shared Task 2011. Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. ACL 2011.
3. Taku Kudoh. 2007. CRF++. http://crfpp.sourceforge.net/.
4. Ryan McDonald and Fernando Pereira. 2005. Identifying Gene and Protein Mentions in Text Using Conditional Random Fields. BMC Bioinformatics. 6:S6.
5. Yusuke Miyao and Jun'ichi Tsujii. 2008. Feature Forest Models for Probabilistic HPSG Parsing. Computational Linguistics, 34(1):35–80.
6. Ngan L. T. Nguyen and Jin-Dong Kim. 2008. Exploring Domain Differences for the Design of Pronoun Resolution Systems for Biomedical Text. Proceedings of COLING 2008:625-632
7. Ngan L. T. Nguyen, Jin-Dong Kim, and Jun’ichi Tsujii. 2008. Challenges in Pronoun Resolution System for Biomedical Text. Proceedings of LREC 2008.
8. Ngan L. T. Nguyen, Jin-Dong Kim, and Jun’ichi Tsujii. 2011. Overview of the Protein Coreference task in BioNLP Shared Task 2011. Proceedings of the BioNLP 2011 Workshop Companion Volume for Shared Task, Portland, Oregon, June. ACL 2011.
9. Massimo Poesio and Mijail A. Kabadjov. 2004. A general-purpose, off-the-shelf anaphora resolution module: implementation and preliminary evaluation. Proceedings of LREC 2004.
10. Long Qiu, Min-Yen Kan, and Tat-Seng Chua. 2004. A Public Reference Implementation of the Rap Anaphora Resolution Algorithm. Proceedings of LREC 2004.
11. Veselin Stoyanov, Claire Cardie, Nathan Gilbert, Ellen Riloff, David Buttler, and David Hysom. 2010a. Reconcile: A Coreference Resolution Platform. Tech Report. Cornell University.
12. Veselin Stoyanov, Claire Cardie, Nathan Gilbert, Ellen Riloff, David Buttler, and David Hysom. 2010b. Coreference Resolution with Reconcile. Proceedings of ACL 2010.
13. Veselin Stoyanov, Nathan Gilbert, Claire Cardie, and Ellen Riloff. 2009. Conundrums in Noun Phrase Coreference Resolution: Making Sense of the State-of-the-Art. Proceedings of ACL-IJCNLP 2009.
14. Yoshimasa Tsuruoka and Jun'ichi Tsujii. 2005. Bidirectional Inference with the Easiest-First Strategy for Tagging Sequence Data. Proceedings of HLT/EMNLP 2005:467-474.
15. Yannick Versley, Simone P. Ponzetto, Massimo Poesio, Vladimir Eidelman, Alan Jern, Jason Smith, Xiaofeng Yang, and Alessandro Moschitti. 2008. BART: A modular toolkit for coreference resolution. Proceedings of LREC 2008.
16. Xiaofeng Yang, Jian Su, Guodong Zhou, and Chew Lim Tan. 2004a. A NP-Cluster Based Approach to Coreference Resolution. Proceedings of COLING 2004:226-232.
17. XiaoFeng Yang, GuoDong Zhou, Jian Su, and Chew Lim Tan. 2004b. Improving Noun Phrase Coreference Resolution by Matching Strings. Proceedings of IJCNLP 2004:226-333.
18. GuoDong Zhou, Dan Shen, Jie Zhang, Jian Su, and SoonHeng Tan. 2005. Recognition of Protein/Gene Names from Text Using an Ensemble of Classifiers. BMC Bioinformatics. 6:S7.