Mycobacterium abscessus infection in cystic fibrosis: Molecular typing and clinical outcomes

Journal of Medical Microbiology

Volumn 63, Issue , 2014, Pages 1241-1246

  Harris, Kathryn A ^a   Kenna, Dervla T D ^b  

^a GREAT ORMOND STREET HOSPITAL   (United Kingdom)

^b PUBLIC HEALTH ENGLAND   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ATYPICAL MYCOBACTERIOSIS; CLASSIFICATION; CYSTIC FIBROSIS; DISEASE TRANSMISSION; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR TYPING; MYCOBACTERIUM; POLYMERASE CHAIN REACTION; REVIEW; TREATMENT OUTCOME;

CYSTIC FIBROSIS; HUMANS; MOLECULAR TYPING; MYCOBACTERIUM; MYCOBACTERIUM INFECTIONS, NONTUBERCULOUS; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TREATMENT OUTCOME;

EID: 84907285289     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.077164-0     Document Type: Review

References (50)

1. Adèambi, T. & Drancourt, M. (2004). Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int J Syst Evol Microbiol 54, 2095-2105.
2. Adékambi, T., Berger, P., Raoult, D. & Drancourt, M. (2006). rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 56, 133-143.
3. Arnold, C., Barrett, A., Cross, L. & Magee, J. G. (2012). The use of rpoB sequence analysis in the differentiation of Mycobacterium abscessus and Mycobacterium chelonae: a critical judgement in cystic fibrosis? Clin Microbiol Infect 18, E131-E133.
4. Bastian, S., Veziris, N., Roux, A. L., Brossier, F., Gaillard, J. L., Jarlier, V. & Cambau, E. (2011). Assessment of clarithromycin susceptibility in strains belonging to the Mycobacterium abscessus group by erm(41) and rrl sequencing. Antimicrob Agents Chemother 55, 775-781.
5. Blauwendraat, C., Dixon, G. L., Hartley, J. C., Foweraker, J. & Harris, K. A. (2012). The use of a two-gene sequencing approach to accurately distinguish between the species within the Mycobacterium abscessus complex and Mycobacterium chelonae. Eur J Clin Microbiol Infect Dis 31, 1847-1853.
6. Blossom, D. B., Alelis, K. A., Chang, D. C., Flores, A. H., Gill, J., Beall, D., Peterson, A. M., Jensen, B., Noble-Wang, J. & other authors (2008). Pseudo-outbreak of Mycobacterium abscessus infection caused by laboratory contamination. Infect Control Hosp Epidemiol 29, 57-62.
7. Broda, A., Jebbari, H., Beaton, K., Mitchell, S. & Drobniewski, F. (2013). Comparative drug resistance of Mycobacterium abscessus and M. chelonae isolates from patients with and without cystic fibrosis in the United Kingdom. J Clin Microbiol 51, 217-223.
8. Bryant, J. M., Grogono, D. M., Greaves, D., Foweraker, J., Roddick, I., Inns, T., Reacher, M., Haworth, C. S., Curran, M. D. & other authors (2013). Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 381, 1551-1560.
9. CFF (2012). Cystic Fibrosis Foundation Patient Registry 2011 Annual Data Report to the Center Directors. Bethesda, MD: Cystic Fibrosis Foundation.
10. Chalermskulrat, W., Sood, N., Neuringer, I. P., Hecker, T. M., Chang, L., Rivera, M. P., Paradowski, L. J. & Aris, R. M. (2006). Nontuberculous mycobacteria in end stage cystic fibrosis: implications for lung transplantation. Thorax 61, 507-513.
11. Choi, G.-E., Shin, S. J., Won, C.-J., Min, K.-N., Oh, T., Hahn, M.-Y., Lee, K., Lee, S. H., Daley, C. L. & other authors (2012). Macrolide treatment for Mycobacterium abscessus and Mycobacterium massiliense infection and inducible resistance. Am J Respir Crit Care Med 186, 917-925.
12. CLSI (2011). Susceptibility Testing of Mycobacteria, Nocardiae and Other Aerobic Actinomycetes; Approved Standard, 2nd edn, M24A2. Wayne, PA: Clinical and Laboratory Standards Institute.
13. Davidson, R. M., Hasan, N. A., de Moura, V. C., Duarte, R. S., Jackson, M. & Strong, M. (2013). Phylogenomics of Brazilian epidemic isolates of Mycobacterium abscessus subsp. bolletii reveals relationships of global outbreak strains. Infect Genet Evol 20, 292-297.
14. Duarte, R. S., Lourenço, M. C. S., Fonseca, L. S., Leão, S. C., Amorim, E. L. T., Rocha, I. L. L., Coelho, F. S., Viana-Niero, C., Gomes, K. M. & other authors (2009). Epidemic of postsurgical infections caused by Mycobacterium massiliense. J Clin Microbiol 47, 2149-2155.
15. Euzéby, J. (2006). List of new names and new combinations previously effectively, but not validly, published. Int J Syst Evol Microbiol 56, 2025-2027.
16. Feazel, L. M., Baumgartner, L. K., Peterson, K. L., Frank, D. N., Harris, J. K. & Pace, N. R. (2009). Opportunistic pathogens enriched in showerhead biofilms. Proc Natl Acad Sci U S A 106, 16393- 16399.
17. Gilljam, M., Scherstén, H., Silverborn, M., Jönsson, B. & Ericsson Hollsing, A. (2010). Lung transplantation in patients with cystic fibrosis and Mycobacterium abscessus infection. J Cyst Fibros 9, 272- 276.
18. Griffith, D. E., Aksamit, T., Brown-Elliott, B. A., Catanzaro, A., Daley, C., Gordin, F., Holland, S. M., Horsburgh, R., Huitt, G. & other authors (2007). An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 175, 367-416.
19. Harada, T., Akiyama, Y., Kurashima, A., Nagai, H., Tsuyuguchi, K., Fujii, T., Yano, S., Shigeto, E., Kuraoka, T. & other authors (2012). Clinical and microbiological differences between Mycobacterium abscessus and Mycobacterium massiliense lung disease. J Clin Microbiol 50, 3556-3561.
20. Harris, K. A., Kenna, D. T., Blauwendraat, C., Hartley, J. C., Turton, J. F., Aurora, P. & Dixon, G. L. (2012). Molecular fingerprinting of Mycobacterium abscessus strains in a cohort of pediatric cystic fibrosis patients. J Clin Microbiol 50, 1758-1761.
21. Jamal, W., Salama, M. F., Al Hashem, G., Rifaei, M., Eldeen, H., Husain, E. H., Ahmad, S. & Rotimi, V. O. (2014). An outbreak of Mycobacterium abscessus infection in a pediatric intensive care unit in Kuwait. Pediatr Infect Dis J 33, e67-e70.
22. Jönsson, B. E., Gilljam, M., Lindblad, A., Ridell, M., Wold, A. E. & Welinder-Olsson, C. (2007). Molecular epidemiology of Mycobacterium abscessus, with focus on cystic fibrosis. J Clin Microbiol 45, 1497-1504.
23. Kim, S. Y., Kang, Y. A., Bae, I. K., Yim, J.-J., Park, M. S., Kim, Y. S., Kim, S. K., Chang, J. & Jeong, S. H. (2013). Standardization of multilocus sequence typing scheme for Mycobacterium abscessus and Mycobacterium massiliense. Diagn Microbiol Infect Dis 77, 143- 149.
24. Koh, W. J., Jeon, K., Lee, N. Y., Kim, B. J., Kook, Y. H., Lee, S. H., Park, Y. K., Kim, C. K., Shin, S. J. & other authors (2011). Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus. Am J Respir Crit Care Med 183, 405-410.
25. Kreutzfeldt, K. M., McAdam, P. R., Claxton, P., Holmes, A., Seagar, A. L., Laurenson, I. F. & Fitzgerald, J. R. (2013). Molecular longitudinal tracking of Mycobacterium abscessus spp. during chronic infection of the human lung. PLoS ONE 8, e63237.
26. Kusunoki, S. & Ezaki, T. (1992). Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov. Int J Syst Bacteriol 42, 240-245.
27. Leao, S. C., Tortoli, E., Viana-Niero, C., Ueki, S. Y., Lima, K. V., Lopes, M. L., Yubero, J., Menendez, M. C. & Garcia, M. J. (2009). Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed. J Clin Microbiol 47, 2691-2698.
28. Leao, S. C., Tortoli, E., Euzéby, J. P. & Garcia, M. J. (2011). Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus. Int J Syst Evol Microbiol 61, 2311-2313.
29. Leung, J. M. & Olivier, K. N. (2013). Nontuberculous mycobacteria: the changing epidemiology and treatment challenges in cystic fibrosis. Curr Opin Pulm Med 19, 662-669.
30. Luong, M. L., Morrissey, O. & Husain, S. (2010). Assessment of infection risks prior to lung transplantation. Curr Opin Infect Dis 23, 578-583.
31. Macheras, E., Roux, A. L., Ripoll, F., Sivadon-Tardy, V., Gutierrez, C., Gaillard, J. L. & Heym, B. (2009). Inaccuracy of single-target sequencing for discriminating species of the Mycobacterium abscessus group. J Clin Microbiol 47, 2596-2600.
32. Macheras, E., Roux, A. L., Bastian, S., Leão, S. C., Palaci, M., Sivadon-Tardy, V., Gutierrez, C., Richter, E., Rüsch-Gerdes, S. & other authors (2011). Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains. J Clin Microbiol 49, 491-499.
33. Macheras, E., Konjek, J., Roux, A. L., Thiberge, J. M., Bastian, S., Leão, S. C., Palaci, M., Sivadon-Tardy, V., Gutierrez, C. & other authors (2014). Multilocus sequence typing scheme for the Mycobacterium abscessus complex. Res Microbiol 165, 82-90.
34. Matsumoto, C. K., Chimara, E., Bombarda, S., Duarte, R. S. & Leão, S. C. (2011). Diversity of pulsed-field gel electrophoresis patterns of Mycobacterium abscessus type 2 clinical isolates. J Clin Microbiol 49, 62-68.
35. Nash, K. A., Brown-Elliott, B. A. & Wallace, R. J., Jr (2009). A novel gene, erm(41), confers inducible macrolide resistance to clinical isolates of Mycobacterium abscessus but is absent from Mycobacterium chelonae. Antimicrob Agents Chemother 53, 1367-1376.
36. Nessar, R., Cambau, E., Reyrat, J. M., Murray, A. & Gicquel, B. (2012). Mycobacterium abscessus: a new antibiotic nightmare. J Antimicrob Chemother 67, 810-818.
37. Palazzo, I. C., Pitondo-Silva, A., Levy, C. E. & da Costa Darini, A. L. (2011). Changes in vancomycin-resistant Enterococcus faecium causing outbreaks in Brazil. J Hosp Infect 79, 70-74.
38. Ringuet, H., Akoua-Koffi, C., Honore, S., Varnerot, A., Vincent, V., Berche, P., Gaillard, J. L. & Pierre-Audigier, C. (1999). hsp65 sequencing for identification of rapidly growing mycobacteria. J Clin Microbiol 37, 852-857.
39. Robinson, P. D., Harris, K. A., Aurora, P., Hartley, J. C., Tsang, V. & Spencer, H. (2013). Paediatric lung transplant outcomes vary with Mycobacterium abscessus complex species. Eur Respir J 41, 1230-1232.
40. Sabat, A. J., Budimir, A., Nashev, D., Sá-Leão, R., van Dijl, J. M., Laurent, F., Grundmann, H., Friedrich, A. W. on behalf of the ESCMID Study Group of Epidemiological Markers (ESGEM) (2013). Overview of molecular typing methods for outbreak detection and epidemiological surveillance. Euro Surveill 18, 20380.
41. Saiman, L. & Siegel, J. (2004). Infection control in cystic fibrosis. Clin Microbiol Rev 17, 57-71.
42. Sassi, M., Ben Kahla, I. & Drancourt, M. (2013). Mycobacterium abscessus multispacer sequence typing. BMC Microbiol 13, 3.
43. Scarparo, C., Piccoli, P., Rigon, A., Ruggiero, G., Nista, D. & Piersimoni, C. (2001). Direct identification of mycobacteria from MB/BacT alert 3D bottles: comparative evaluation of two commercial probe assays. J Clin Microbiol 39, 3222-3227.
44. Seddon, P., Fidler, K., Raman, S., Wyatt, H., Ruiz, G., Elston, C., Perrin, F., Gyi, K., Bilton, D. & other authors (2013). Prevalence of nontuberculous mycobacteria in cystic fibrosis clinics, United Kingdom, 2009. Emerg Infect Dis 19, 1128-1130.
45. Shang, S., Gibbs, S., Henao-Tamayo, M., Shanley, C. A., McDonnell, G., Duarte, R. S., Ordway, D. J. & Jackson, M. (2011). Increased virulence of an epidemic strain of Mycobacterium massiliense in mice. PLoS ONE 6, e24726.
46. Thomson, R., Tolson, C., Sidjabat, H., Huygens, F. & Hargreaves, M. (2013). Mycobacterium abscessus isolated from municipal water - a potential source of human infection. BMC Infect Dis 13, 241.
47. Turton, J. F., Turton, S. E., Yearwood, L., Yarde, S., Kaufmann, M. E. & Pitt, T. L. (2010). Evaluation of a nine-locus variable-number tandemrepeat scheme for typing of Pseudomonas aeruginosa. Clin Microbiol Infect 16, 1111-1116.
48. Watkins, R. R. & Lemonovich, T. L. (2012). Evaluation of infections in the lung transplant patient. Curr Opin Infect Dis 25, 193-198.
49. Wong, Y. L., Ong, C. S. & Ngeow, Y. F. (2012). Molecular typing of Mycobacterium abscessus based on tandem-repeat polymorphism. J Clin Microbiol 50, 3084-3088.
50. Zelazny, A. M., Root, J. M., Shea, Y. R., Colombo, R. E., Shamputa, I. C., Stock, F., Conlan, S., McNulty, S., Brown-Elliott, B. A. & other authors (2009). Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. J Clin Microbiol 47, 1985-1995.