-
1
-
-
0036699596
-
Selection for short introns in highly expressed genes
-
Castillo-Davis CI, Mekhedov SL, Hartl DL, Koonin EV, Kondrashov FA. 2002. Selection for short introns in highly expressed genes. Nat Genet 31: 415-418.
-
(2002)
Nat Genet
, vol.31
, pp. 415-418
-
-
Castillo-Davis, C.I.1
Mekhedov, S.L.2
Hartl, D.L.3
Koonin, E.V.4
Kondrashov, F.A.5
-
2
-
-
0348013067
-
Gene length and proximity to neighbors affect genome-wide expression levels
-
Chiaromonte F, Miller W, Bouhassira EE. 2003. Gene length and proximity to neighbors affect genome-wide expression levels. Genome Res 13: 2602-2608.
-
(2003)
Genome Res
, vol.13
, pp. 2602-2608
-
-
Chiaromonte, F.1
Miller, W.2
Bouhassira, E.E.3
-
4
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
Domazet-Loso T, Tautz D. 2010. Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol 8: 66.
-
(2010)
BMC Biol
, vol.8
, pp. 66
-
-
Domazet-Loso, T.1
Tautz, D.2
-
5
-
-
34547819351
-
The rise and fall of Hox gene clusters
-
Duboule D. 2007. The rise and fall of Hox gene clusters. Development 134: 2549-2560.
-
(2007)
Development
, vol.134
, pp. 2549-2560
-
-
Duboule, D.1
-
6
-
-
84875391572
-
Ensembl 2013
-
Flicek P, Ahmed I, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, et al. 2013. Ensembl 2013. Nucleic Acids Res 41: D48-D55.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D48-D55
-
-
Flicek, P.1
Ahmed, I.2
Amode, M.R.3
Barrell, D.4
Beal, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fairley, S.10
-
7
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
8
-
-
28844477866
-
The genesis and evolution of homeobox gene clusters
-
Garcia-Fernandez J. 2005. The genesis and evolution of homeobox gene clusters. Nat Rev Genet 6: 881-892.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 881-892
-
-
Garcia-Fernandez, J.1
-
9
-
-
0004068679
-
-
Blackwell Science, Malden, MA
-
Gerhart J, Kirschner M. 1997. Cells, embryos, and evolution: toward a cellular and developmental understanding of phenotypic variation and evolutionary adaptability. Blackwell Science, Malden, MA.
-
(1997)
Cells, Embryos, and Evolution: Toward A Cellular and Developmental Understanding of Phenotypic Variation and Evolutionary Adaptability
-
-
Gerhart, J.1
Kirschner, M.2
-
10
-
-
0035252410
-
Alternative splicing: Increasing diversity in the proteomic world
-
Graveley BR. 2001. Alternative splicing: increasing diversity in the proteomic world. Trends Genet 17: 100-107.
-
(2001)
Trends Genet
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
11
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. 2003. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302: 2141-2144.
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
12
-
-
33646559207
-
On the formation of novel genes by duplication in the Caenorhabditis elegans genome
-
Katju V, Lynch M. 2006. On the formation of novel genes by duplication in the Caenorhabditis elegans genome. Mol Biol Evol 23: 1056-1067.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1056-1067
-
-
Katju, V.1
Lynch, M.2
-
13
-
-
77953809541
-
Constraints and plasticity in genome and molecular-phenome evolution
-
Koonin EV, Wolf YI. 2010. Constraints and plasticity in genome and molecular-phenome evolution. Nat Rev Genet 11: 487-498.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 487-498
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
14
-
-
20044383938
-
Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms
-
Kopelman NM, Lancet D, Yanai I. 2005. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nat Genet 37: 588-589.
-
(2005)
Nat Genet
, vol.37
, pp. 588-589
-
-
Kopelman, N.M.1
Lancet, D.2
Yanai, I.3
-
15
-
-
0038701605
-
The birth of an alternatively spliced exon: 39 splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G. 2003. The birth of an alternatively spliced exon: 39 splice-site selection in Alu exons. Science 300: 1288-1291.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
16
-
-
77950644737
-
A global map of human gene expression
-
Lukk M, Kapushesky M, Nikkila J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A. 2010. A global map of human gene expression. Nat Biotechnol 28: 322-324.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 322-324
-
-
Lukk, M.1
Kapushesky, M.2
Nikkila, J.3
Parkinson, H.4
Goncalves, A.5
Huber, W.6
Ukkonen, E.7
Brazma, A.8
-
18
-
-
0345306751
-
The origins of genome complexity
-
Lynch M, Conery JS. 2003. The origins of genome complexity. Science 302: 1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
19
-
-
0038486898
-
Divergence in the spatial pattern of gene expression between human duplicate genes
-
Makova KD, Li WH. 2003. Divergence in the spatial pattern of gene expression between human duplicate genes. Genome Res 13: 1638-1645.
-
(2003)
Genome Res
, vol.13
, pp. 1638-1645
-
-
Makova, K.D.1
Li, W.H.2
-
20
-
-
0021451768
-
A homologous protein-coding sequence in Drosophila homeotic genes and its conservation in other metazoans
-
McGinnis W, Garber RL, Wirz J, Kuroiwa A, Gehring WJ. 1984. A homologous protein-coding sequence in Drosophila homeotic genes and its conservation in other metazoans. Cell 37: 403-408.
-
(1984)
Cell
, vol.37
, pp. 403-408
-
-
McGinnis, W.1
Garber, R.L.2
Wirz, J.3
Kuroiwa, A.4
Gehring, W.J.5
-
21
-
-
38149066750
-
SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements
-
Mersch B, Sela N, Ast G, Suhai S, Hotz-Wagenblatt A. 2007. SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements. BMC Genet 8: 78.
-
(2007)
BMC Genet
, vol.8
, pp. 78
-
-
Mersch, B.1
Sela, N.2
Ast, G.3
Suhai, S.4
Hotz-Wagenblatt, A.5
-
22
-
-
84875404794
-
The UCSC Genome Browser database: Extensions and updates 2013
-
Meyer LR, Zweig AS, Hinrichs AS, Karolchik D, Kuhn RM, Wong M, Sloan CA, Rosenbloom KR, Roe G, Rhead B, et al. 2013. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res 41: D64-D69.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D64-D69
-
-
Meyer, L.R.1
Zweig, A.S.2
Hinrichs, A.S.3
Karolchik, D.4
Kuhn, R.M.5
Wong, M.6
Sloan, C.A.7
Rosenbloom, K.R.8
Roe, G.9
Rhead, B.10
-
23
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A. 2005. Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37: 997-1002.
-
(2005)
Nat Genet
, vol.37
, pp. 997-1002
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
24
-
-
0037669010
-
Low conservation of alternative splicing patterns in the human and mouse genomes
-
Nurtdinov RN, Artamonova II, Mironov AA, Gelfand MS. 2003. Low conservation of alternative splicing patterns in the human and mouse genomes. Hum Mol Genet 12: 1313-1320.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1313-1320
-
-
Nurtdinov, R.N.1
Artamonova, I.I.2
Mironov, A.A.3
Gelfand, M.S.4
-
25
-
-
77956781437
-
Maintenance of duplicate genes and their functional redundancy by reduced expression
-
QianW, Liao BY, Chang AY, Zhang J. 2010. Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends Genet 26: 425-430.
-
(2010)
Trends Genet
, vol.26
, pp. 425-430
-
-
Qianw Liao, B.Y.1
Chang, A.Y.2
Zhang, J.3
-
26
-
-
79952254962
-
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication
-
Roux J, Robinson-Rechavi M. 2011. Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication. Genome Res 21: 357-363.
-
(2011)
Genome Res
, vol.21
, pp. 357-363
-
-
Roux, J.1
Robinson-Rechavi, M.2
-
27
-
-
34748869000
-
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
-
Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, Ast G. 2007. Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. Genome Biol 8: R127.
-
(2007)
Genome Biol
, vol.8
, pp. R127
-
-
Sela, N.1
Mersch, B.2
Gal-Mark, N.3
Lev-Maor, G.4
Hotz-Wagenblatt, A.5
Ast, G.6
-
28
-
-
77952844078
-
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
-
Sela N, Kim E, Ast G. 2010. The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates. Genome Biol 11: R59.
-
(2010)
Genome Biol
, vol.11
, pp. R59
-
-
Sela, N.1
Kim, E.2
Ast, G.3
-
29
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, et al. 2012. A map of the cis-regulatory sequences in the mouse genome. Nature 488: 116-120.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
-
30
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D. 2002. Alu-containing exons are alternatively spliced. Genome Res 12: 1060-1067.
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
31
-
-
84862335811
-
Revisit on the evolutionary relationship between alternative splicing and gene duplication
-
Su Z, Gu X. 2012. Revisit on the evolutionary relationship between alternative splicing and gene duplication. Gene 504: 102-106.
-
(2012)
Gene
, vol.504
, pp. 102-106
-
-
Su, Z.1
Gu, X.2
-
32
-
-
32044443159
-
Evolution of alternative splicing after gene duplication
-
Su Z, Wang J, Yu J, Huang X, Gu X. 2006. Evolution of alternative splicing after gene duplication. Genome Res 16: 182-189.
-
(2006)
Genome Res
, vol.16
, pp. 182-189
-
-
Su, Z.1
Wang, J.2
Yu, J.3
Huang, X.4
Gu, X.5
-
33
-
-
34047232679
-
The (in)dependence of alternative splicing and gene duplication
-
Talavera D, Vogel C, Orozco M, Teichmann SA, de la Cruz X. 2007. The (in)dependence of alternative splicing and gene duplication. PLoS Comput Biol 3: e33.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. e33
-
-
Talavera, D.1
Vogel, C.2
Orozco, M.3
Teichmann, S.A.4
De La Cruz, X.5
-
34
-
-
77951715627
-
An evolutionarily conserved mechanism for controlling the efficiency of protein translation
-
Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y. 2010. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell 141: 344-354.
-
(2010)
Cell
, vol.141
, pp. 344-354
-
-
Tuller, T.1
Carmi, A.2
Vestsigian, K.3
Navon, S.4
Dorfan, Y.5
Zaborske, J.6
Pan, T.7
Dahan, O.8
Furman, I.9
Pilpel, Y.10
-
35
-
-
33746192317
-
Unifying measures of gene function and evolution
-
Wolf YI, Carmel L, Koonin EV. 2006. Unifying measures of gene function and evolution. Proc Biol Sci 273: 1507-1515.
-
(2006)
Proc Biol Sci
, vol.273
, pp. 1507-1515
-
-
Wolf, Y.I.1
Carmel, L.2
Koonin, E.V.3
-
36
-
-
84878498140
-
Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses
-
Woods S, Coghlan A, Rivers D, Warnecke T, Jeffries SJ, Kwon T, Rogers A, Hurst LD, Ahringer J. 2013. Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses. PLoS Genet 9: e1003330.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003330
-
-
Woods, S.1
Coghlan, A.2
Rivers, D.3
Warnecke, T.4
Jeffries, S.J.5
Kwon, T.6
Rogers, A.7
Hurst, L.D.8
Ahringer, J.9
|