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Volumn 9, Issue 9, 2014, Pages

Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AVIAN INFLUENZA VIRUS; COMPUTER PROGRAM; GENE FLOW; GENETIC REASSORTMENT; GENETIC TRAIT; GEOGRAPHIC DISTRIBUTION; HOST; INFLUENZA VIRUS A H7N3; MEXICO; MIGRANT BIRD; NONHUMAN; NORTH AMERICA; PATHOGENICITY; PHYLOGENETIC TREE; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS; WATERFOWL; WILD SPECIES; WINTER; ANIMAL; BIRD; CLASSIFICATION; EPIDEMIC; GENETICS; GENOTYPE; INFLUENZA A VIRUS (H7N3); INFLUENZA IN BIRDS; PHYLOGENY; POULTRY; TRANSMISSION; VIROLOGY;

EID: 84907149055     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0107330     Document Type: Article
Times cited : (26)

References (47)
  • 1
    • 34247608876 scopus 로고    scopus 로고
    • Investigations on infection status with H5 and H7 avian influenza virus in shortdistance and long-distance migrant birds in 2001
    • Schnebel B, Dierschke V, Rautenschlein S, Ryll M, Neumann U (2007) Investigations on infection status with H5 and H7 avian influenza virus in shortdistance and long-distance migrant birds in 2001. Avian Dis 51: 432-433.
    • (2007) Avian Dis , vol.51 , pp. 432-433
    • Schnebel, B.1    Dierschke, V.2    Rautenschlein, S.3    Ryll, M.4    Neumann, U.5
  • 2
    • 0037095589 scopus 로고    scopus 로고
    • The importance of animal influenza for human disease
    • Webster RG (2002) The importance of animal influenza for human disease. Vaccine 20 Suppl 2: S16-20.
    • (2002) Vaccine , vol.20 , pp. S16-20
    • Webster, R.G.1
  • 3
    • 18844470928 scopus 로고    scopus 로고
    • Structure of the hemagglutinin precursor cleavage site, a determinant of influenza pathogenicity and the origin of the labile conformation
    • Chen J, Lee KH, Steinhauer DA, Stevens DJ, Skehel JJ, et al. (1998) Structure of the hemagglutinin precursor cleavage site, a determinant of influenza pathogenicity and the origin of the labile conformation. Cell 95: 409-417.
    • (1998) Cell , vol.95 , pp. 409-417
    • Chen, J.1    Lee, K.H.2    Steinhauer, D.A.3    Stevens, D.J.4    Skehel, J.J.5
  • 4
    • 0026643396 scopus 로고
    • Influenza-virus hemagglutinin with multibasic cleavage site is activated by furin, a subtilisin-like endoprotease
    • Stienekegrober A, Vey M, Angliker H, Shaw E, Thomas G, et al. (1992) Influenza-Virus Hemagglutinin with Multibasic Cleavage Site Is Activated by Furin, a Subtilisin-Like Endoprotease. Embo Journal 11: 2407-2414.
    • (1992) Embo Journal , vol.11 , pp. 2407-2414
    • Stienekegrober, A.1    Vey, M.2    Angliker, H.3    Shaw, E.4    Thomas, G.5
  • 5
    • 84892724789 scopus 로고    scopus 로고
    • Reassortment patterns of avian influenza virus internal segments among different subtypes
    • Lu L, Lycett SJ, Leigh Brown AJ (2014) Reassortment patterns of avian influenza virus internal segments among different subtypes. BMC Evol Biol 14: 16.
    • (2014) BMC Evol Biol , vol.14 , pp. 16
    • Lu, L.1    Lycett, S.J.2    Leigh Brown, A.J.3
  • 6
    • 34447272239 scopus 로고    scopus 로고
    • Characterization of low-pathogenic H5 subtype influenza viruses from Eurasia: Implications for the origin of highly pathogenic H5N1 viruses
    • Duan L, Campitelli L, Fan XH, Leung YH, Vijaykrishna D, et al. (2007) Characterization of low-pathogenic H5 subtype influenza viruses from Eurasia: implications for the origin of highly pathogenic H5N1 viruses. J Virol 81: 7529-7539.
    • (2007) J Virol , vol.81 , pp. 7529-7539
    • Duan, L.1    Campitelli, L.2    Fan, X.H.3    Leung, Y.H.4    Vijaykrishna, D.5
  • 7
    • 2542430208 scopus 로고    scopus 로고
    • Interspecies transmission of an H7N3 influenza virus from wild birds to intensively reared domestic poultry in Italy
    • Campitelli L, Mogavero E, De Marco MA, Delogu M, Puzelli S, et al. (2004) Interspecies transmission of an H7N3 influenza virus from wild birds to intensively reared domestic poultry in Italy. Virology 323: 24-36.
    • (2004) Virology , vol.323 , pp. 24-36
    • Campitelli, L.1    Mogavero, E.2    De Marco, M.A.3    Delogu, M.4    Puzelli, S.5
  • 9
    • 12144289244 scopus 로고    scopus 로고
    • Recombination resulting in virulence shift in avian influenza outbreak, Chile
    • Suarez DL, Senne DA, Banks J, Brown IH, Essen SC, et al. (2004) Recombination resulting in virulence shift in avian influenza outbreak, Chile. Emerg Infect Dis 10: 693-699.
    • (2004) Emerg Infect Dis , vol.10 , pp. 693-699
    • Suarez, D.L.1    Senne, D.A.2    Banks, J.3    Brown, I.H.4    Essen, S.C.5
  • 11
    • 70249101831 scopus 로고    scopus 로고
    • Highly pathogenic avian influenza virus A (H7N3) in domestic poultry, Saskatchewan, Canada, 2007
    • Berhane Y, Hisanaga T, Kehler H, Neufeld J, Manning L, et al. (2009) Highly pathogenic avian influenza virus A (H7N3) in domestic poultry, Saskatchewan, Canada, 2007. Emerg Infect Dis 15: 1492-1495.
    • (2009) Emerg Infect Dis , vol.15 , pp. 1492-1495
    • Berhane, Y.1    Hisanaga, T.2    Kehler, H.3    Neufeld, J.4    Manning, L.5
  • 12
    • 84866397095 scopus 로고    scopus 로고
    • Highly pathogenic avian influenza in Mexico (H7N3) - A significant threat to poultry production not to be underestimated
    • Sherrilyn Wainwright CT, Filip Claes, Moisés VargasTerán, Vincent Martin, Juan Lubroth (2012) Highly Pathogenic Avian Influenza in Mexico (H7N3) - A significant threat to poultry production not to be underestimated. EMPRES WATCH 26: 1-9.
    • (2012) EMPRES WATCH , vol.26 , pp. 1-9
    • Sherrilyn Wainwright, C.T.1    Claes, F.2    Vargasterán, M.3    Martin, V.4    Lubroth, J.5
  • 14
    • 0028822710 scopus 로고
    • Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico
    • Horimoto T, Rivera E, Pearson J, Senne D, Krauss S, et al. (1995) Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Virology 213: 223-230.
    • (1995) Virology , vol.213 , pp. 223-230
    • Horimoto, T.1    Rivera, E.2    Pearson, J.3    Senne, D.4    Krauss, S.5
  • 16
    • 79959859629 scopus 로고    scopus 로고
    • Spatial dynamics of human-origin H1 influenza a virus in North American Swine
    • Wilke CO, Nelson MI, Lemey P, Tan Y, Vincent A, et al. (2011) Spatial Dynamics of Human-Origin H1 Influenza A Virus in North American Swine. PLoS Pathogens 7: e1002077.
    • (2011) PLoS Pathogens , vol.7 , pp. e1002077
    • Wilke, C.O.1    Nelson, M.I.2    Lemey, P.3    Tan, Y.4    Vincent, A.5
  • 17
    • 82455208934 scopus 로고    scopus 로고
    • Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds
    • Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, et al. (2012) Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. Ecol Lett 15: 24-33.
    • (2012) Ecol Lett , vol.15 , pp. 24-33
    • Lam, T.T.1    Ip, H.S.2    Ghedin, E.3    Wentworth, D.E.4    Halpin, R.A.5
  • 18
    • 0033602713 scopus 로고    scopus 로고
    • Role of hemagglutinin cleavage for the pathogenicity of influenza virus
    • Steinhauer DA (1999) Role of hemagglutinin cleavage for the pathogenicity of influenza virus. Virology 258: 1-20.
    • (1999) Virology , vol.258 , pp. 1-20
    • Steinhauer, D.A.1
  • 19
    • 84876791304 scopus 로고    scopus 로고
    • The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA
    • Maurer-Stroh S, Lee RT, Gunalan V, Eisenhaber F (2013) The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA. Virol J 10: 139.
    • (2013) Virol J , vol.10 , pp. 139
    • Maurer-Stroh, S.1    Lee, R.T.2    Gunalan, V.3    Eisenhaber, F.4
  • 20
    • 84880757869 scopus 로고    scopus 로고
    • Characterization of the 2012 highly pathogenic avian influenza H7N3 virus isolated from poultry in an outbreak in Mexico: Pathobiology and vaccine protection
    • Kapczynski DR, Pantin-Jackwood M, Guzman SG, Ricardez Y, Spackman E, et al. (2013) Characterization of the 2012 Highly Pathogenic Avian Influenza H7N3 Virus Isolated from Poultry in an Outbreak in Mexico: Pathobiology and Vaccine Protection. Journal of Virology 87: 9086-9096.
    • (2013) Journal of Virology , vol.87 , pp. 9086-9096
    • Kapczynski, D.R.1    Pantin-Jackwood, M.2    Guzman, S.G.3    Ricardez, Y.4    Spackman, E.5
  • 21
    • 84864864614 scopus 로고    scopus 로고
    • Predicting the next influenza virus
    • Krauss S, Webster RG (2012) Predicting the next influenza virus. Science 337: 644.
    • (2012) Science , vol.337 , pp. 644
    • Krauss, S.1    Webster, R.G.2
  • 22
    • 44949184685 scopus 로고    scopus 로고
    • Contemporary North American influenza H7 viruses possess human receptor specificity: Implications for virus transmissibility
    • Belser JA, Blixt O, Chen LM, Pappas C, Maines TR, et al. (2008) Contemporary North American influenza H7 viruses possess human receptor specificity: Implications for virus transmissibility. Proc Natl Acad Sci U S A 105: 7558-7563.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 7558-7563
    • Belser, J.A.1    Blixt, O.2    Chen, L.M.3    Pappas, C.4    Maines, T.R.5
  • 23
    • 84885573612 scopus 로고    scopus 로고
    • The genesis and source of the H7N9 influenza viruses causing human infections in China
    • Lam TT, Wang J, Shen Y, Zhou B, Duan L, et al. (2013) The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature 502: 241-244.
    • (2013) Nature , vol.502 , pp. 241-244
    • Lam, T.T.1    Wang, J.2    Shen, Y.3    Zhou, B.4    Duan, L.5
  • 24
    • 37349004076 scopus 로고    scopus 로고
    • Influenza in migratory birds and evidence of limited intercontinental virus exchange
    • Krauss S, Obert CA, Franks J, Walker D, Jones K, et al. (2007) Influenza in migratory birds and evidence of limited intercontinental virus exchange. PLoS Pathog 3: e167.
    • (2007) PLoS Pathog , vol.3 , pp. e167
    • Krauss, S.1    Obert, C.A.2    Franks, J.3    Walker, D.4    Jones, K.5
  • 25
    • 84878284641 scopus 로고    scopus 로고
    • Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: Phylogenetic, structural, and coalescent analyses
    • Liu D, Shi W, Shi Y, Wang D, Xiao H, et al. (2013) Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet 381: 1926-1932.
    • (2013) Lancet , vol.381 , pp. 1926-1932
    • Liu, D.1    Shi, W.2    Shi, Y.3    Wang, D.4    Xiao, H.5
  • 26
    • 84859962725 scopus 로고    scopus 로고
    • Disease dynamics and bird migration-linking mallards Anas platyrhynchos and subtype diversity of the influenza A virus in time and space
    • Gunnarsson G, Latorre-Margalef N, Hobson KA, Van Wilgenburg SL, Elmberg J, et al. (2012) Disease dynamics and bird migration-linking mallards Anas platyrhynchos and subtype diversity of the influenza A virus in time and space. PLoS One 7: e35679.
    • (2012) PLoS One , vol.7 , pp. e35679
    • Gunnarsson, G.1    Latorre-Margalef, N.2    Hobson, K.A.3    Van Wilgenburg, S.L.4    Elmberg, J.5
  • 27
    • 34249726105 scopus 로고    scopus 로고
    • Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds
    • Munster VJ, Baas C, Lexmond P, Waldenstrom J, Wallensten A, et al. (2007) Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS Pathog 3: e61.
    • (2007) PLoS Pathog , vol.3 , pp. e61
    • Munster, V.J.1    Baas, C.2    Lexmond, P.3    Waldenstrom, J.4    Wallensten, A.5
  • 28
    • 79960942429 scopus 로고    scopus 로고
    • Phylogenetic analysis of low pathogenicity H5N1 and H7N3 influenza A virus isolates recovered from sentinel, free flying, wild mallards at one study site during 2006
    • Dugan VG, Dunham EJ, Jin G, Sheng ZM, Kaser E, et al. (2011) Phylogenetic analysis of low pathogenicity H5N1 and H7N3 influenza A virus isolates recovered from sentinel, free flying, wild mallards at one study site during 2006. Virology 417: 98-105.
    • (2011) Virology , vol.417 , pp. 98-105
    • Dugan, V.G.1    Dunham, E.J.2    Jin, G.3    Sheng, Z.M.4    Kaser, E.5
  • 29
    • 84883424593 scopus 로고    scopus 로고
    • Influenza a virus migration and persistence in North American wild birds
    • Bahl J, Krauss S, Kuhnert D, Fourment M, Raven G, et al. (2013) Influenza a virus migration and persistence in North American wild birds. PLoS Pathog 9: e1003570.
    • (2013) PLoS Pathog , vol.9 , pp. e1003570
    • Bahl, J.1    Krauss, S.2    Kuhnert, D.3    Fourment, M.4    Raven, G.5
  • 31
    • 84871958581 scopus 로고    scopus 로고
    • Where do avian influenza viruses meet in the Americas?
    • Gonzalez-Reiche AS, Perez DR (2012) Where Do Avian Influenza Viruses Meet in the Americas? Avian Diseases 56: 1025-1033.
    • (2012) Avian Diseases , vol.56 , pp. 1025-1033
    • Gonzalez-Reiche, A.S.1    Perez, D.R.2
  • 32
    • 67649538978 scopus 로고    scopus 로고
    • Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic
    • Smith GJD, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, et al. (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459: 1122-1125.
    • (2009) Nature , vol.459 , pp. 1122-1125
    • Smith, G.J.D.1    Vijaykrishna, D.2    Bahl, J.3    Lycett, S.J.4    Worobey, M.5
  • 33
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 34
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H (2005) RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456-463.
    • (2005) Bioinformatics , vol.21 , pp. 456-463
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 35
  • 36
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 38
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B, Rambaut A, Drummond AJ (2006) Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 23: 7-9.
    • (2006) Mol Biol Evol , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 39
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: Spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec F, Rambaut A, Suchard MA, Lemey P (2011) SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27: 2910-2912.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 40
    • 79955417630 scopus 로고    scopus 로고
    • Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: Efficient hypothesis testing through hierarchical phylogenetic models
    • Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, et al. (2011) Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Mol Biol Evol 28: 1605-1616.
    • (2011) Mol Biol Evol , vol.28 , pp. 1605-1616
    • Edo-Matas, D.1    Lemey, P.2    Tom, J.A.3    Serna-Bolea, C.4    Van Den-Blink, A.E.5
  • 44
    • 54849429789 scopus 로고    scopus 로고
    • On phylogenetic tests of irreversible evolution
    • Goldberg EE, Igic B (2008) On phylogenetic tests of irreversible evolution. Evolution 62: 2727-2741.
    • (2008) Evolution , vol.62 , pp. 2727-2741
    • Goldberg, E.E.1    Igic, B.2
  • 45
    • 33747819509 scopus 로고    scopus 로고
    • An integrated-likelihood method for estimating genetic differentiation between populations
    • Kitakado T, Kitada S, Kishino H, Skaug HJ (2006) An integrated-likelihood method for estimating genetic differentiation between populations. Genetics 173: 2073-2082.
    • (2006) Genetics , vol.173 , pp. 2073-2082
    • Kitakado, T.1    Kitada, S.2    Kishino, H.3    Skaug, H.J.4
  • 46
    • 84865475040 scopus 로고    scopus 로고
    • Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
    • Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, et al. (2012) Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty. Molecular Biology and Evolution 29: 2157-2167.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 2157-2167
    • Baele, G.1    Lemey, P.2    Bedford, T.3    Rambaut, A.4    Suchard, M.A.5
  • 47
    • 84877663836 scopus 로고    scopus 로고
    • Accurate model selection of relaxed molecular clocks in bayesian phylogenetics
    • Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P (2013) Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Mol Biol Evol 30: 239-243.
    • (2013) Mol Biol Evol , vol.30 , pp. 239-243
    • Baele, G.1    Li, W.L.2    Drummond, A.J.3    Suchard, M.A.4    Lemey, P.5


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