Modular genetic architecture of the toxigenic plasmid pIS56-63 harboring cry1Ab21 in Bacillus thuringiensis subsp. Thuringiensis strain IS5056

Polish Journal of Microbiology

Volumn 63, Issue 2, 2014, Pages 147-156

  Murawska, Emilia ^a   Fiedoruk, Krzysztof ^b   Swiecicka, Izabela ^a  

^a UNIVERSITY OF BIALYSTOK   (Poland)

^b MEDICAL UNIVERSITY OF BIALYSTOK   (Poland)

Author keywords

Bacillus thuringiensis IS5056; Cry1Ab21; Genetic organization; PIS56 63

Indexed keywords

ADENOSINE TRIPHOSPHATASE; BINDING PROTEIN; CRY1AB TOXIN; CRY1AB21 TOXIN; ENDOTOXIN; EXTRACHROMOSOMAL DNA; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; HEMOLYSIN; INSECTICIDAL CRYSTAL PROTEIN, BACILLUS THURINGIENSIS;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS CEREUS; BACILLUS THURINGIENSIS; BACILLUS THURINGIENSIS IS5056; BACTERIAL CHROMOSOME; GENE CASSETTE; GENE INSERTION SEQUENCE; GENE STRUCTURE; GENETIC CODE; GENETIC ORGANIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; RECOMBINANT PLASMID; TRANSPOSON; TRICHOPLUSIA NI; TYPE IV SECRETION SYSTEM; GENE ORDER; GENETICS; METABOLISM;

BACILLUS CEREUS; BACILLUS THURINGIENSIS; BACILLUS THURINGIENSIS SEROVAR THURINGIENSIS; TRICHOPLUSIA NI;

BACILLUS THURINGIENSIS; BACTERIAL PROTEINS; ENDOTOXINS; GENE ORDER; HEMOLYSIN PROTEINS; OPEN READING FRAMES; PLASMIDS;

EID: 84906980444     PISSN: 17331331     EISSN: 25444646     Source Type: Journal    
DOI: 10.33073/pjm-2014-020     Document Type: Article

References (30)

1. Berry C., S. O'Neil, E. Ben-Dov, A.F. Jones, L. Murphy, M.A. Quail, M.T. Holden, D. Harris, A. Zaritsky and J. Parkhill. 2002. Complete sequence and organization of pBtoxis, the toxin-coding plasmid of Bacillus thuringiensis subsp. Israelensis. Appl. Environ. Microbiol. 68: 5082-5095.
2. Bourguet F.A., B.E. Souza, A.K. Hinz, M.A. Coleman and P.J. Jackson. 2012. Characterization of a novel lytic protein encoded by the Bacillus cereus E33L gene ampD as a Bacillus anthracis antimicrobial protein. Appl. Environ. Microbiol. 78: 3025-3027.
3. Carver T., N. Tomson, A. Bleasby, M. Berriman and J. Parkhill. 2009. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics 25: 119-120.
4. Cervin M.A., R.J. Lewis, J.A. Brannigan and G.B. Spiegelman. 1998. The Bacillus subtilis regulator SinR inhibits spoIIG promoter transcription in vitro without displacing RNA polymerase. Nucleic Acids Res. 16: 3806-3812.
5. Colledge V.L., M.J. Fogg, V.M. Levdikov, A Leech, E.J. Dodson and A.J. Wilkinson. 2011. Structure and organisation of Sin R, the master regulator of biofilm formation in Bacillus subtilis. J. Mol. Biol. 411: 597-613.
6. Delcher A.L., K.A. Bratke, E.C. Powers and S.L. Salzberg. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23: 673-679.
7. Gayathri P., T. Fujii, J. Møller-Jensen, F. van den Ent, K. Namba and J. Löwe. 2012. A bipolar spindle of antiparallel ParM filaments drives bacterial plasmid segregation. Science 338: 1334-1337.
8. Grohmann E., G. Muth and M. Espinosa. 2003. Conjugative plas-mid transfer in Gram-positive bacteria. Microbiol. Mol. Biol. Rev. 67: 277-301.
9. Helgason E., O.A. Okstad, D.A. Caugant, H.A. Johansen, A. Fouet, M. Mock, I. Hegna and A.-B. Kolstø. 2000. Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis-one species on the basis of genetic evidence. Appl. Environ. Microbiol. 66: 2627-2630.
10. Hoton F., L. Andrup, I. Swiecicka and J. Mahillon. 2005. The cereulide genetic determinants of emetic Bacillus cereus are plasmid-borne. Microbiology 151: 2121-2124.
11. Johnson J.W., J.F. Fisher and S. Mobashery. 2013. Bacterial cellwall recycling. Ann. N. Y. Acad. Sci. 1277: 54-75.
12. Krogh A., B. Larsson, G. von Heijne and E.L. Sonnhammer. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305: 567-580.
13. Leonard C., Y. Chen and J. Mahillon. 1997. Diversity and differential distribution of IS231, IS232 and IS240 among Bacillus cereus, Bacillus thuringiensis and Bacillus mycoides. Microbiology 143: 2537-2547.
14. Malvar T., C. Gawron-Burke and J.A. Baum. 1994. Overexpression of Bacillus thuringiensis HknA, a histidine protein kinase homology, bypasses early Spo mutations that result in CryIIIA overproduction. J. Bacteriol. 176: 4742-4729.
15. Marchler-Bauer A., C. Zheng, F. Chitsaz, M.K. Derbyshire, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, C.J. Lanczycki and others. 2013. CDD: conserved domains and protein three-dimensional structure. Nucleic. Acids. Res. 41: D348-D352.
16. Martínez-Núñez C., P. Altamirano-Silva, F. Alvarado-Guillén, E. Moreno, C. Guzmán-Verri and E. Chaves-Olarte. 2010. The Two-Component System BvrR/BvrS Regulates the Expression of the Type IV Secretion System VirB in Brucella abortus. J. Bacteriol. 192: 5603-5608.
17. Mock M. And A. Fouet. 2001. Anthrax. Ann. Rev. Microbiol. 55: 647-671.
18. Murawska E., K. Fiedoruk, D.K. Bideshi and I. Swiecicka. 2013. Complete genome sequence of Bacillus thuringiensis subsp. Thuringi-ensis IS5056, an isolate highly toxic to Trichoplusia ni. Genome Announcem. 2: e0010813.
19. Pfughoef K.J., P. Sumby and T.M. Koehler. 2011. Bacillus anthra-cis sin locus and regulation of secreted proteases. J. Bacteriol. 193: 631-639.
20. Rutherford K., J. Parkhill, J. Crook, T. Horsnell, P. Rice, M.A. Rajandream and B. Barrell. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
21. Sanahuja G., R. Banakar, R.M. Twyman, T. Capell and P. Christou P. 2011. Bacillus thuringiensis: a century of research, development and commercial applications. Plant Biotechnol. J. 9: 283-300.
22. Souza R.C., G.D. Quispe Saji, M.O. Costa, D.S. Netto, N.C. Lima, C.C. Klein, A.T. Vasconcelos and M.F. Nicolas. 2012. AtlasT4SS: A curated database for type IV secretion systems. BMC Microbiol. 12: 172.
23. Stenfors Arnes L.P., A. Fagerlund and P.E. Granum. 2008. From soil to gut: Bacillus cereus and its food poisoning toxins. FEMS Microbiol. Rev. 32: 579-606.
24. Sullivan M.J., N.K. Petty and S.A. Beatson. 2011. Easyfig: a genome comparison visualizer. Bioinformatics 27: 1009-1010.
25. Swiecicka I., D.K. Bideshi and B.A. Federici. 2008. Novel isolate of Bacillus thuringiensis subsp. Thuringiensis that produces a quasi-cuboidal crystal of Cry1Ab21 toxic to larvae of Trichoplusia ni. Appl. Environ. Microbiol. 74: 923-930.
26. Swiecicka I. 2008. Natural occurrence of Bacillus thuringiensis and Bacillus cereus in eukaryotic organisms: a case for symbiosis. Bio-control Sci. Technol. 18: 221-239.
27. Toussaint A. And C. Merlin. 2002. Mobile elements as a combination of functional modules. Plasmid 47: 26-35.
28. Treangen T.J. And E.P.C Rocha. 2011. Horizontal transfer, not duplication, drives the expansion of protein families in Prokaryotes. PLoS Genet. 7: e1001284.
29. Van der Auwera G.A., L. Andrup and J. Mahillon. 2005. Conju-gative plasmid pAW63 brings new insights into the genesis of the Bacillus anthracis virulence plasmid pXO2 and the Bacillus thuringi-ensis plasmid pBT9727. BMC Genomics 6: 103.
30. Yuan Y., D. Zheng, X. Hu, Q. Cai and Z. Yuan. 2010. Conjugative transfer of insecticidal plasmid pHT73 from Bacillus thuringiensis to B. Anthracis and compatibility of this plasmid with pXO1 and pXO2. Appl. Environ. Microbiol. 76: 468-473.