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Volumn 9, Issue 9, 2014, Pages

MALDI imaging mass spectrometry profiling of N-glycans in formalin-fixed paraffin embedded clinical tissue blocks and tissue microarrays

Author keywords

[No Author keywords available]

Indexed keywords

GLYCAN; GLYCOPEPTIDASE; N LINKED GLYCAN; TUMOR MARKER; UNCLASSIFIED DRUG; FORMALDEHYDE; PARAFFIN; POLYSACCHARIDE;

EID: 84906965809     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0106255     Document Type: Article
Times cited : (194)

References (29)
  • 1
    • 84876316245 scopus 로고    scopus 로고
    • Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue
    • Thompson SM, Craven RA, Nirmalan NJ, Harnden P, Selby PJ, et al. (2013) Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue. Proteomics Clin Appl 7; 241-251.
    • (2013) Proteomics Clin Appl , vol.7 , pp. 241-251
    • Thompson, S.M.1    Craven, R.A.2    Nirmalan, N.J.3    Harnden, P.4    Selby, P.J.5
  • 2
    • 84876299279 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age
    • Craven RA, Cairns DA, Zougman A, Harnden P, Selby PJ, et al. (2013) Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age. Proteomics Clin Appl 7; 273-282.
    • (2013) Proteomics Clin Appl , vol.7 , pp. 273-282
    • Craven, R.A.1    Cairns, D.A.2    Zougman, A.3    Harnden, P.4    Selby, P.J.5
  • 3
    • 84859965675 scopus 로고    scopus 로고
    • Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
    • Magdeldin S, Yamamoto T (2012) Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues. Proteomics 12: 1045-1058.
    • (2012) Proteomics , vol.12 , pp. 1045-1058
    • Magdeldin, S.1    Yamamoto, T.2
  • 4
    • 84876314836 scopus 로고    scopus 로고
    • Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins
    • Wis̈niewski JR, Dus̈ K, Mann M (2013) Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins. Proteomics Clin Appl 7; 225-233.
    • (2013) Proteomics Clin Appl , vol.7 , pp. 225-233
    • Wis̈niewski, J.R.1    Dus̈, K.2    Mann, M.3
  • 5
    • 34548559553 scopus 로고    scopus 로고
    • Tissue microarrays enabling high-throughput molecular pathology
    • Takikita M, Chung JY, Hewitt SM (2007) Tissue microarrays enabling high-throughput molecular pathology. Curr Opin Biotechnol 18: 318-325.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 318-325
    • Takikita, M.1    Chung, J.Y.2    Hewitt, S.M.3
  • 7
    • 33747870205 scopus 로고    scopus 로고
    • The application of tissue microarrays in the validation of microarray results
    • Hewitt SM (2006) The application of tissue microarrays in the validation of microarray results. Methods Enzymol 410: 400-415.
    • (2006) Methods Enzymol , vol.410 , pp. 400-415
    • Hewitt, S.M.1
  • 8
    • 57149117848 scopus 로고    scopus 로고
    • A decade of tissue microarrays: Progress in the discovery and validation of cancer biomarkers
    • Camp RL, Neumeister V, Rimm DL (2008) A decade of tissue microarrays: progress in the discovery and validation of cancer biomarkers. J Clin Oncol 26; 5630-5637.
    • (2008) J Clin Oncol , vol.26 , pp. 5630-5637
    • Camp, R.L.1    Neumeister, V.2    Rimm, D.L.3
  • 9
    • 28544446695 scopus 로고    scopus 로고
    • Biomarkers in cancer staging, prognosis and treatment selection
    • Ludwig JA, Weinstein JN (2005) Biomarkers in cancer staging, prognosis and treatment selection. Nat Rev Cancer 5; 845-856.
    • (2005) Nat Rev Cancer , vol.5 , pp. 845-856
    • Ludwig, J.A.1    Weinstein, J.N.2
  • 10
    • 84867965064 scopus 로고    scopus 로고
    • Regulation of the metastatic cell phenotype by sialylated glycans
    • Schultz MJ, Swindall AF, Bellis SL (2012) Regulation of the metastatic cell phenotype by sialylated glycans. Cancer Metastasis Rev 31; 501-518.
    • (2012) Cancer Metastasis Rev , vol.31 , pp. 501-518
    • Schultz, M.J.1    Swindall, A.F.2    Bellis, S.L.3
  • 12
    • 67650394884 scopus 로고    scopus 로고
    • Tissue micro array analysis of ganglioside N-glycolyl GM3 expression and signal transducer and activator of transcription (STAT)-3 activation in relation to dendritic cell infiltration and microvessel density in non-small cell lung cancer
    • van Cruijsen H, Ruiz MG, van der Valk P, de Gruijl TD, Giaccone G (2009) Tissue micro array analysis of ganglioside N-glycolyl GM3 expression and signal transducer and activator of transcription (STAT)-3 activation in relation to dendritic cell infiltration and microvessel density in non-small cell lung cancer. BMC Cancer 9:180.
    • (2009) BMC Cancer , vol.9 , pp. 180
    • Van Cruijsen, H.1    Ruiz, M.G.2    Van Der Valk, P.3    De Gruijl, T.D.4    Giaccone, G.5
  • 13
    • 84872171488 scopus 로고    scopus 로고
    • Fucosyltransferase 8 as a functional regulator of nonsmall cell lung cancer
    • Chen CY, Jan YH, Juan YH, Yang CJ, Huang MS, et al. (2013) Fucosyltransferase 8 as a functional regulator of nonsmall cell lung cancer. Proc Natl Acad Sci U S A 110; 630-635.
    • (2013) Proc Natl Acad Sci U S a , vol.110 , pp. 630-635
    • Chen, C.Y.1    Jan, Y.H.2    Juan, Y.H.3    Yang, C.J.4    Huang, M.S.5
  • 14
    • 77956202971 scopus 로고    scopus 로고
    • Immunohistochemical analysis of carbohydrate antigens in chronic inflammatory gastrointestinal diseases
    • Kobayashi M, Nakayama J (2010) Immunohistochemical analysis of carbohydrate antigens in chronic inflammatory gastrointestinal diseases. Methods Enzymol 479; 271-289.
    • (2010) Methods Enzymol , vol.479 , pp. 271-289
    • Kobayashi, M.1    Nakayama, J.2
  • 15
    • 33751001298 scopus 로고    scopus 로고
    • New developments in profiling and imaging of proteins from tissue sections by MALDI mass spectrometry
    • Chaurand P, Norris JL, Cornett DS, Mobley JA, Caprioli RM (2006) New developments in profiling and imaging of proteins from tissue sections by MALDI mass spectrometry. J Proteome Res 5; 2889-2900.
    • (2006) J Proteome Res , vol.5 , pp. 2889-2900
    • Chaurand, P.1    Norris, J.L.2    Cornett, D.S.3    Mobley, J.A.4    Caprioli, R.M.5
  • 16
    • 69949095925 scopus 로고    scopus 로고
    • Imaging mass spectrometry of a specific fragment of mitogen-activated protein kinase/extracellular signal-regulated kinase kinase kinase 2 discriminates cancer from uninvolved prostate tissue
    • Cazares LH, Troyer D, Mendrinos S, Lance RA, Nyalwidhe JO, et al. (2009) Imaging mass spectrometry of a specific fragment of mitogen-activated protein kinase/extracellular signal-regulated kinase kinase kinase 2 discriminates cancer from uninvolved prostate tissue. Clin Cancer Res 15; 5541-5551.
    • (2009) Clin Cancer Res , vol.15 , pp. 5541-5551
    • Cazares, L.H.1    Troyer, D.2    Mendrinos, S.3    Lance, R.A.4    Nyalwidhe, J.O.5
  • 18
    • 79953186946 scopus 로고    scopus 로고
    • From whole-body sections down to cellular level, multiscale imaging of phospholipids by MALDI mass spectrometry
    • O110.004259
    • Chaurand P, Cornett DS, Angel PM, Caprioli RM (2011) From whole-body sections down to cellular level, multiscale imaging of phospholipids by MALDI mass spectrometry. Mol Cell Proteomics 10: O110.004259.
    • (2011) Mol Cell Proteomics , vol.10
    • Chaurand, P.1    Cornett, D.S.2    Angel, P.M.3    Caprioli, R.M.4
  • 19
    • 81055144381 scopus 로고    scopus 로고
    • MALDI imaging mass spectrometry: Bridging biology and chemistry in drug development
    • Castellino S, Groseclose MR, Wagner D (2011) MALDI imaging mass spectrometry: bridging biology and chemistry in drug development. Bioanalysis 3; 2427-2441.
    • (2011) Bioanalysis , vol.3 , pp. 2427-2441
    • Castellino, S.1    Groseclose, M.R.2    Wagner, D.3
  • 20
    • 49049113308 scopus 로고    scopus 로고
    • MALDI-FTICR imaging mass spectrometry of drugs and metabolites in tissue
    • Cornett DS, Frappier SL, Caprioli RM (2008) MALDI-FTICR imaging mass spectrometry of drugs and metabolites in tissue. Anal Chem 80; 5648-5653.
    • (2008) Anal Chem , vol.80 , pp. 5648-5653
    • Cornett, D.S.1    Frappier, S.L.2    Caprioli, R.M.3
  • 21
    • 77955372862 scopus 로고    scopus 로고
    • Fine mapping the spatial distribution and concentration of unlabeled drugs within tissue micro-compartments using imaging mass spectrometry
    • Nilsson A, Fehniger TE, Gustavsson L, Andersson M, Kenne K, et al. (2010) Fine mapping the spatial distribution and concentration of unlabeled drugs within tissue micro-compartments using imaging mass spectrometry. PLoS One; e11411.
    • (2010) PLoS One , pp. e11411
    • Nilsson, A.1    Fehniger, T.E.2    Gustavsson, L.3    Andersson, M.4    Kenne, K.5
  • 22
    • 53549111100 scopus 로고    scopus 로고
    • High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry
    • Groseclose MR, Massion PP, Chaurand P, Caprioli RM (2008) High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry. Proteomics 8 3715-3724.
    • (2008) Proteomics , vol.8 , pp. 3715-3724
    • Groseclose, M.R.1    Massion, P.P.2    Chaurand, P.3    Caprioli, R.M.4
  • 23
    • 84884709219 scopus 로고    scopus 로고
    • MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer
    • Quaas A, Bahar AS, von Loga K, Seddiqi AS, Singer JM, et al. (2013) MALDI imaging on large-scale tissue microarrays identifies molecular features associated with tumour phenotype in oesophageal cancer. Histopathology 63; 455-462.
    • (2013) Histopathology , vol.63 , pp. 455-462
    • Quaas, A.1    Bahar, A.S.2    Von Loga, K.3    Seddiqi, A.S.4    Singer, J.M.5
  • 24
    • 80054825298 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
    • Casadonte R, Caprioli RM (2011) Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry. Nat Protoc 6; 1695-1709.
    • (2011) Nat Protoc , vol.6 , pp. 1695-1709
    • Casadonte, R.1    Caprioli, R.M.2
  • 25
    • 84886893246 scopus 로고    scopus 로고
    • Matrix assisted laser desorption ionization imaging mass spectrometry workflow for spatial profiling analysis of N-linked glycan expression in tissues
    • Powers TW, Jones EE, Betesh LR, Romano PR, Gao P, et al. (2013) Matrix assisted laser desorption ionization imaging mass spectrometry workflow for spatial profiling analysis of N-linked glycan expression in tissues. Anal Chem 85; 9799-9806.
    • (2013) Anal Chem , vol.85 , pp. 9799-9806
    • Powers, T.W.1    Jones, E.E.2    Betesh, L.R.3    Romano, P.R.4    Gao, P.5
  • 26
    • 45549094069 scopus 로고    scopus 로고
    • GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans
    • Ceroni A, Maass K, Geyer H, Geyer R, Dell A, et al. (2008) GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans, J Proteome Res 7; 1650-1659.
    • (2008) J Proteome Res , vol.7 , pp. 1650-1659
    • Ceroni, A.1    Maass, K.2    Geyer, H.3    Geyer, R.4    Dell, A.5
  • 27
    • 84897403310 scopus 로고    scopus 로고
    • Fibrogenesis in pancreatic cancer is a dynamic process regulated by macrophage-stellate cell interaction
    • Shi C, Washington MK, Chaturvedi R, Drosos Y, Revetta FL, et al. (2014) Fibrogenesis in pancreatic cancer is a dynamic process regulated by macrophage-stellate cell interaction. Lab Invest 94; 409-421.
    • (2014) Lab Invest , vol.94 , pp. 409-421
    • Shi, C.1    Washington, M.K.2    Chaturvedi, R.3    Drosos, Y.4    Revetta, F.L.5
  • 28
    • 18844434899 scopus 로고    scopus 로고
    • Structural determination of N-linked glycans by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry
    • Harvey DJ (2005) Structural determination of N-linked glycans by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry. Proteomics 5; 1774-1786.
    • (2005) Proteomics , vol.5 , pp. 1774-1786
    • Harvey, D.J.1
  • 29
    • 84862846021 scopus 로고    scopus 로고
    • Increased levels of tetraantennary N-linked glycan but not core fucosylation are associated with hepatocellular carcinoma tissue
    • Mehta A, Norton P, Liang H, Comunale MA, Wang M, et al. (2012) Increased levels of tetraantennary N-linked glycan but not core fucosylation are associated with hepatocellular carcinoma tissue. Cancer Epidemiol Biomarkers Prev 21; 925-933.
    • (2012) Cancer Epidemiol Biomarkers Prev , vol.21 , pp. 925-933
    • Mehta, A.1    Norton, P.2    Liang, H.3    Comunale, M.A.4    Wang, M.5


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