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Volumn 37, Issue 9, 2014, Pages 1925-1927

CADLIVE toolbox for MATLAB: Automatic dynamic modeling of biochemical networks with comprehensive system analysis

Author keywords

Automatic modeling; Global parameter optimization; Robustness; Simulator

Indexed keywords

BIOCHEMISTRY; ROBUSTNESS (CONTROL SYSTEMS); SIMULATORS; SYNTHETIC BIOLOGY; SYSTEMS ANALYSIS;

EID: 84906948183     PISSN: 16157591     EISSN: 16157605     Source Type: Journal    
DOI: 10.1007/s00449-014-1167-8     Document Type: Article
Times cited : (6)

References (16)
  • 1
    • 81355123249 scopus 로고    scopus 로고
    • Software for systems biology: From tools to integrated platforms
    • Ghosh S, Matsuoka Y, Asai Y, Hsin KY, Kitano H (2011) Software for systems biology: from tools to integrated platforms. Nat Rev Genet 12(12):821-832
    • (2011) Nat Rev Genet , vol.12 , Issue.12 , pp. 821-832
    • Ghosh, S.1    Matsuoka, Y.2    Asai, Y.3    Hsin, K.Y.4    Kitano, H.5
  • 2
    • 84906947160 scopus 로고    scopus 로고
    • BioFNet: Biological functional network database for analysis and synthesis of biological systems
    • doi:10.1093/bib/bbt048
    • Kurata H, Maeda K, Onaka T, Takata T (2013) BioFNet: biological functional network database for analysis and synthesis of biological systems. Brief Bioinform. doi:10.1093/bib/bbt048
    • (2013) Brief Bioinform
    • Kurata, H.1    Maeda, K.2    Onaka, T.3    Takata, T.4
  • 4
    • 51749122228 scopus 로고    scopus 로고
    • Dynamical modeling and multi-experiment fitting with Potters Wheel
    • Maiwald T, Timmer J (2008) Dynamical modeling and multi-experiment fitting with Potters Wheel. Bioinformatics 24(18):2037-2043
    • (2008) Bioinformatics , vol.24 , Issue.18 , pp. 2037-2043
    • Maiwald, T.1    Timmer, J.2
  • 7
    • 32544443964 scopus 로고    scopus 로고
    • Systems Biology Toolbox for MATLAB: A computational platform for research in systems biology
    • DOI 10.1093/bioinformatics/bti799
    • Schmidt H, Jirstrand M (2006) Systems biology toolbox for MATLAB: a computational platform for research in systems biology. Bioinformatics 22(4):514-515 (Pubitemid 43231434)
    • (2006) Bioinformatics , vol.22 , Issue.4 , pp. 514-515
    • Schmidt, H.1    Jirstrand, M.2
  • 8
    • 17844397967 scopus 로고    scopus 로고
    • CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models
    • DOI 10.1101/gr.3463705
    • Kurata H, Masaki K, Sumida Y, Iwasaki R (2005) CADLIVE dynamic simulator: direct link of biochemical networks to dynamic models. Genome Res 15(4):590-600 (Pubitemid 41057822)
    • (2005) Genome Research , vol.15 , Issue.4 , pp. 590-600
    • Kurata, H.1    Masaki, K.2    Sumida, Y.3    Iwasaki, R.4
  • 9
    • 36749043657 scopus 로고    scopus 로고
    • Extended CADLIVE: A novel graphical notation for design of biochemical network maps and computational pathway analysis
    • Kurata H, Inoue K, Maeda K, Masaki K, Shimokawa Y, Zhao Q (2007) Extended CADLIVE: a novel graphical notation for design of biochemical network maps and computational pathway analysis. Nucleic Acids Res 35(20):e134
    • (2007) Nucleic Acids Res , vol.35 , Issue.20
    • Kurata, H.1    Inoue, K.2    Maeda, K.3    Masaki, K.4    Shimokawa, Y.5    Zhao, Q.6
  • 12
    • 84861865453 scopus 로고    scopus 로고
    • Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps
    • Inoue K, Shimozono S, Yoshida H, Kurata H (2012) Application of approximate pattern matching in two dimensional spaces to grid layout for biochemical network maps. PLoS One 7(6):e37739
    • (2012) PLoS One , vol.7 , Issue.6
    • Inoue, K.1    Shimozono, S.2    Yoshida, H.3    Kurata, H.4
  • 14
    • 77951099999 scopus 로고    scopus 로고
    • Two-phase search (TPS) method: Nonbiased and high-speed parameter search for dynamic models of biochemical networks
    • Maeda K, Kurata H (2009) Two-phase search (TPS) method: nonbiased and high-speed parameter search for dynamic models of biochemical networks. IPSJ Trans Bioinform 2:2-14
    • (2009) IPSJ Trans Bioinform , vol.2 , pp. 2-14
    • Maeda, K.1    Kurata, H.2
  • 15
    • 78650784246 scopus 로고    scopus 로고
    • Quasi-multiparameter sensitivity measure for robustness analysis of complex biochemical networks
    • Maeda K, Kurata H (2011) Quasi-multiparameter sensitivity measure for robustness analysis of complex biochemical networks. J Theor Biol 272(1):174-186
    • (2011) J Theor Biol , vol.272 , Issue.1 , pp. 174-186
    • Maeda, K.1    Kurata, H.2
  • 16
    • 84857405878 scopus 로고    scopus 로고
    • A symmetric dual feedback system provides a robust and entrainable oscillator
    • Maeda K, Kurata H (2012) A symmetric dual feedback system provides a robust and entrainable oscillator. PLoS One 7(2):e30489
    • (2012) PLoS One , vol.7 , Issue.2
    • Maeda, K.1    Kurata, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.