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Volumn 8, Issue 1, 2014, Pages

Ranking non-synonymous single nucleotide polymorphisms based on disease concepts

Author keywords

Bioinformatics; Disease causing; Disease specific; FATHMM; HMMs; nsSNPs; PolyPhen; SIFT; SNV

Indexed keywords

AMINO ACID SUBSTITUTION; ARTICLE; BIOLOGY; COMPUTER PROGRAM; GENETICS; HUMAN; INTERNET; MUTATION; PHENOTYPE; PROBABILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84906926068     PISSN: 14739542     EISSN: 14797364     Source Type: Journal    
DOI: 10.1186/1479-7364-8-11     Document Type: Article
Times cited : (156)

References (25)
  • 2
    • 79952764520 scopus 로고    scopus 로고
    • Performance of mutation pathogenicity prediction methods on missense variants
    • Thusberg J, Olatubosun A, Vihinen M: Performance of mutation pathogenicity prediction methods on missense variants. Hum Mutat 2011, 32:358-368.
    • (2011) Hum Mutat , vol.32 , pp. 358-368
    • Thusberg, J.1    Olatubosun, A.2    Vihinen, M.3
  • 4
    • 84871614593 scopus 로고    scopus 로고
    • VariBench: A benchmark database for variations
    • Sasidharan Nair P, Vihinen M: VariBench: A benchmark database for variations. Hum Mutat 2013, 34:42-49.
    • (2013) Hum Mutat , vol.34 , pp. 42-49
    • Sasidharan Nair, P.1    Vihinen, M.2
  • 6
    • 84858205858 scopus 로고    scopus 로고
    • Classification of mismatch repair gene missense variants with PON-MMR
    • Ali H, Olatubosun A, Vihinen M: Classification of mismatch repair gene missense variants with PON-MMR. Hum Mutat 2012, 33:642-650.
    • (2012) Hum Mutat , vol.33 , pp. 642-650
    • Ali, H.1    Olatubosun, A.2    Vihinen, M.3
  • 8
    • 34547566118 scopus 로고    scopus 로고
    • CanPredict: A computational tool for predicting cancer-Associated missense mutations
    • Kaminker JS, Zhang Y, Watanabe C, Zhang Z: CanPredict: A computational tool for predicting cancer-Associated missense mutations. Nucleic Acids Res 2007, 35:W595-W598.
    • (2007) Nucleic Acids Res , vol.35 , pp. W595-W598
    • Kaminker, J.S.1    Zhang, Y.2    Watanabe, C.3    Zhang, Z.4
  • 9
  • 10
    • 80053189298 scopus 로고    scopus 로고
    • Predicting the functional impact of protein mutations: Application to cancer genomics
    • Reva B, Antipin Y, Sander C: Predicting the functional impact of protein mutations: Application to cancer genomics. Nucleic Acids Res 2011, 39:e118.
    • (2011) Nucleic Acids Res , vol.39 , pp. e118
    • Reva, B.1    Antipin, Y.2    Sander, C.3
  • 11
    • 84869873569 scopus 로고    scopus 로고
    • Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation
    • Gonzalez-Perez A, Deu-Pons J, Lopez-Bigas N: Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation. Genome Med 2012, 4:89.
    • (2012) Genome Med , vol.4 , pp. 89
    • Gonzalez-Perez, A.1    Deu-Pons, J.2    Lopez-Bigas, N.3
  • 12
    • 84878880551 scopus 로고    scopus 로고
    • Predicting the functional consequences of cancer-Associated amino acid substitutions
    • Shihab HA, Gough J, Cooper DN, Day INM, Gaunt TR: Predicting the functional consequences of cancer-Associated amino acid substitutions. Bioinformatics 2013, 29:1504-1510.
    • (2013) Bioinformatics , vol.29 , pp. 1504-1510
    • Shihab, H.A.1    Gough, J.2    Cooper, D.N.3    Day, I.N.M.4    Gaunt, T.R.5
  • 13
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • Ng PC, Henikoff S: Predicting deleterious amino acid substitutions. Genome Res 2001, 11:863-874.
    • (2001) Genome Res , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 17
    • 77952988108 scopus 로고    scopus 로고
    • A new generation of homology search tools based on probabilistic inference
    • Eddy SR: A new generation of homology search tools based on probabilistic inference. Genome Inform 2009, 23:205-211.
    • (2009) Genome Inform , vol.23 , pp. 205-211
    • Eddy, S.R.1
  • 18
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough J, Karplus K, Hughey R, Chothia C: Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 2001, 313:903-919.
    • (2001) J Mol Biol , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 19
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • Sonnhammer EL, Eddy SR, Durbin R: Pfam: A comprehensive database of protein domain families based on seed alignments. Proteins 1997, 28:405-420.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.1    Eddy, S.R.2    Durbin, R.3
  • 20
    • 0001927585 scopus 로고
    • On information and sufficiency
    • Kullback S, Leibler RA: On information and sufficiency. Ann Math Stat 1951, 22:79-86.
    • (1951) Ann Math Stat , vol.22 , pp. 79-86
    • Kullback, S.1    Leibler, R.A.2
  • 24
    • 84873087051 scopus 로고    scopus 로고
    • Guidelines for reporting and using prediction tools for genetic variation analysis
    • Vihinen M: Guidelines for reporting and using prediction tools for genetic variation analysis. Hum Mutat 2013, 34:275-282.
    • (2013) Hum Mutat , vol.34 , pp. 275-282
    • Vihinen, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.