메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

Author keywords

Citrus sinensis; Degraded transcript; Fruit ripening; Genome wide comparison; miRNA

Indexed keywords

MICRORNA; MESSENGER RNA; MICROSATELLITE DNA; PLANT RNA; TRANSCRIPTOME; VEGETABLE PROTEIN;

EID: 84906832695     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-695     Document Type: Article
Times cited : (72)

References (63)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • 14744438
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297. 10.1016/S0092-8674(04)00045-5, 14744438.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 79960226204 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions
    • 3135789,3135789, 21457371
    • Wang H, Zhang X, Liu J, Kiba T, Woo J, Ojo T, Hafner M, Tuschl T, Chua NH, Wang XJ. Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. Plant J 2011, 67:292-304. 10.1111/j.1365-313X.2011.04594.x, 3135789,3135789, 21457371.
    • (2011) Plant J , vol.67 , pp. 292-304
    • Wang, H.1    Zhang, X.2    Liu, J.3    Kiba, T.4    Woo, J.5    Ojo, T.6    Hafner, M.7    Tuschl, T.8    Chua, N.H.9    Wang, X.J.10
  • 3
    • 41149149873 scopus 로고    scopus 로고
    • Sorting out small RNAs
    • 18394983
    • Kim VN. Sorting out small RNAs. Cell 2008, 133:25-26. 10.1016/j.cell.2008.03.015, 18394983.
    • (2008) Cell , vol.133 , pp. 25-26
    • Kim, V.N.1
  • 4
    • 79955499404 scopus 로고    scopus 로고
    • Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393*-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12
    • 3101262, 21549312
    • Jin HL, Zhang XM, Zhao HW, Gao S, Wang WC, Katiyar-Agarwal S, Huang HD, Raikhel N. Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393*-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12. Mol Cell 2011, 42:356-366. 10.1016/j.molcel.2011.04.010, 3101262, 21549312.
    • (2011) Mol Cell , vol.42 , pp. 356-366
    • Jin, H.L.1    Zhang, X.M.2    Zhao, H.W.3    Gao, S.4    Wang, W.C.5    Katiyar-Agarwal, S.6    Huang, H.D.7    Raikhel, N.8
  • 5
    • 77956989755 scopus 로고    scopus 로고
    • 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants
    • 2930544, 20643946
    • Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH. 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A 2010, 107:15269-15274. 10.1073/pnas.1001738107, 2930544, 20643946.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 15269-15274
    • Chen, H.M.1    Chen, L.T.2    Patel, K.3    Li, Y.H.4    Baulcombe, D.C.5    Wu, S.H.6
  • 6
    • 78049263858 scopus 로고    scopus 로고
    • MiRNAs in the biogenesis of trans-acting siRNAs in higher plants
    • 20359543
    • Allen E, Howell MD. miRNAs in the biogenesis of trans-acting siRNAs in higher plants. Semin Cell Dev Biol 2010, 21:798-804. 10.1016/j.semcdb.2010.03.008, 20359543.
    • (2010) Semin Cell Dev Biol , vol.21 , pp. 798-804
    • Allen, E.1    Howell, M.D.2
  • 7
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants
    • 17081978
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell 2006, 127:565-577. 10.1016/j.cell.2006.09.032, 17081978.
    • (2006) Cell , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 8
    • 22144457368 scopus 로고    scopus 로고
    • Antiquity of microRNAs and their targets in land plants
    • 1143068, 15849273
    • Axtell MJ, Bartel DP. Antiquity of microRNAs and their targets in land plants. Plant Cell 2005, 17:1658-1673. 10.1105/tpc.105.032185, 1143068, 15849273.
    • (2005) Plant Cell , vol.17 , pp. 1658-1673
    • Axtell, M.J.1    Bartel, D.P.2
  • 9
    • 84883212289 scopus 로고    scopus 로고
    • Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis
    • 3638818, 23487304
    • Karlova R, van Haarst JC, Maliepaard C, van de Geest H, Bovy AG, Lammers M, Angenent GC, de Maagd RA. Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. J Exp Bot 2013, 64:1863-1878. 10.1093/jxb/ert049, 3638818, 23487304.
    • (2013) J Exp Bot , vol.64 , pp. 1863-1878
    • Karlova, R.1    van Haarst, J.C.2    Maliepaard, C.3    van de Geest, H.4    Bovy, A.G.5    Lammers, M.6    Angenent, G.C.7    de Maagd, R.A.8
  • 10
    • 84858980069 scopus 로고    scopus 로고
    • Identification of microRNAs from Amur grape (vitis amurensis Rupr) by deep sequencing and analysis of microRNA variations with bioinformatics
    • 3353164, 22455456
    • Wang C, Han J, Liu CH, Kibet KN, Kayesh E, Shangguan LF, Li XY, Fang JG. Identification of microRNAs from Amur grape (vitis amurensis Rupr) by deep sequencing and analysis of microRNA variations with bioinformatics. BMC Genomics 2012, 13:122. 10.1186/1471-2164-13-122, 3353164, 22455456.
    • (2012) BMC Genomics , vol.13 , pp. 122
    • Wang, C.1    Han, J.2    Liu, C.H.3    Kibet, K.N.4    Kayesh, E.5    Shangguan, L.F.6    Li, X.Y.7    Fang, J.G.8
  • 11
    • 84892381849 scopus 로고    scopus 로고
    • Sex specific expression and distribution of small RNAs in papaya
    • 3916515, 24410969
    • Aryal R, Jagadeeswaran G, Zheng Y, Yu QY, Sunkar R, Ming R. Sex specific expression and distribution of small RNAs in papaya. BMC Genomics 2014, 15:20. 10.1186/1471-2164-15-20, 3916515, 24410969.
    • (2014) BMC Genomics , vol.15 , pp. 20
    • Aryal, R.1    Jagadeeswaran, G.2    Zheng, Y.3    Yu, Q.Y.4    Sunkar, R.5    Ming, R.6
  • 12
    • 84871980450 scopus 로고    scopus 로고
    • Identification and characterization of novel and conserved microRNAs in radish (Raphanus sativus L.) using high-throughput sequencing
    • Xu L, Wang Y, Xu YY, Wang LJ, Zhai LL, Zhu XW, Gong YQ, Ye S, Liu LW. Identification and characterization of novel and conserved microRNAs in radish (Raphanus sativus L.) using high-throughput sequencing. Plant Sci 2013, 201:108-114.
    • (2013) Plant Sci , vol.201 , pp. 108-114
    • Xu, L.1    Wang, Y.2    Xu, Y.Y.3    Wang, L.J.4    Zhai, L.L.5    Zhu, X.W.6    Gong, Y.Q.7    Ye, S.8    Liu, L.W.9
  • 13
    • 84894232740 scopus 로고    scopus 로고
    • Identification of Conserved and Novel Cold-Responsive MicroRNAs in Trifoliate Orange (Poncirus trifoliata (L.) Raf.) Using High-Throughput Sequencing
    • Zhang X-N, Li X, Liu J-H. Identification of Conserved and Novel Cold-Responsive MicroRNAs in Trifoliate Orange (Poncirus trifoliata (L.) Raf.) Using High-Throughput Sequencing. Plant Mol Biol Rep 2014, 32:328-341.
    • (2014) Plant Mol Biol Rep , vol.32 , pp. 328-341
    • Zhang, X.-N.1    Li, X.2    Liu, J.-H.3
  • 16
    • 58049220318 scopus 로고    scopus 로고
    • CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
    • 3202307, 19017659
    • Addo-Quaye C, Miller W, Axtell MJ. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 2009, 25:130-131. 10.1093/bioinformatics/btn604, 3202307, 19017659.
    • (2009) Bioinformatics , vol.25 , pp. 130-131
    • Addo-Quaye, C.1    Miller, W.2    Axtell, M.J.3
  • 17
    • 63849207321 scopus 로고    scopus 로고
    • Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
    • 19247285
    • German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nat Protoc 2009, 4:356-362. 10.1038/nprot.2009.8, 19247285.
    • (2009) Nat Protoc , vol.4 , pp. 356-362
    • German, M.A.1    Luo, S.2    Schroth, G.3    Meyers, B.C.4    Green, P.J.5
  • 18
    • 54949138012 scopus 로고    scopus 로고
    • A miRacle in plant development: role of microRNAs in cell differentiation and patterning
    • 18708151
    • Garcia D. A miRacle in plant development: role of microRNAs in cell differentiation and patterning. Semin Cell Dev Biol 2008, 19:586-595. 10.1016/j.semcdb.2008.07.013, 18708151.
    • (2008) Semin Cell Dev Biol , vol.19 , pp. 586-595
    • Garcia, D.1
  • 19
    • 74549214340 scopus 로고    scopus 로고
    • Small RNAs going the distance during plant development
    • 19796985
    • Chuck G, O'Connor D. Small RNAs going the distance during plant development. Curr Opin Plant Biol 2010, 13:40-45. 10.1016/j.pbi.2009.08.006, 19796985.
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 40-45
    • Chuck, G.1    O'Connor, D.2
  • 20
    • 1542317414 scopus 로고    scopus 로고
    • MicroRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
    • 14999285
    • Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC. microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature 2004, 428:84-88. 10.1038/nature02363, 14999285.
    • (2004) Nature , vol.428 , pp. 84-88
    • Juarez, M.T.1    Kui, J.S.2    Thomas, J.3    Heller, B.A.4    Timmermans, M.C.5
  • 21
    • 16244398080 scopus 로고    scopus 로고
    • Specific effects of microRNAs on the plant transcriptome
    • 15809034
    • Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D. Specific effects of microRNAs on the plant transcriptome. Dev Cell 2005, 8:517-527. 10.1016/j.devcel.2005.01.018, 15809034.
    • (2005) Dev Cell , vol.8 , pp. 517-527
    • Schwab, R.1    Palatnik, J.F.2    Riester, M.3    Schommer, C.4    Schmid, M.5    Weigel, D.6
  • 22
    • 33845791014 scopus 로고    scopus 로고
    • The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis
    • 1693934, 17098808
    • Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 2006, 18:2929-2945. 10.1105/tpc.106.045617, 1693934, 17098808.
    • (2006) Plant Cell , vol.18 , pp. 2929-2945
    • Nikovics, K.1    Blein, T.2    Peaucelle, A.3    Ishida, T.4    Morin, H.5    Aida, M.6    Laufs, P.7
  • 24
    • 84875630642 scopus 로고    scopus 로고
    • Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    • 3603004, 23264558
    • Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E. Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. Mol Plant 2013, 6:423-443. 10.1093/mp/sss160, 3603004, 23264558.
    • (2013) Mol Plant , vol.6 , pp. 423-443
    • Bertolini, E.1    Verelst, W.2    Horner, D.S.3    Gianfranceschi, L.4    Piccolo, V.5    Inze, D.6    Pe, M.E.7    Mica, E.8
  • 25
    • 20444485252 scopus 로고    scopus 로고
    • The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development
    • 1069693, 15722475
    • Millar AA, Gubler F. The Arabidopsis GAMYB-like genes, MYB33 and MYB65, are microRNA-regulated genes that redundantly facilitate anther development. Plant Cell 2005, 17:705-721. 10.1105/tpc.104.027920, 1069693, 15722475.
    • (2005) Plant Cell , vol.17 , pp. 705-721
    • Millar, A.A.1    Gubler, F.2
  • 27
    • 68049146038 scopus 로고    scopus 로고
    • Repression of flowering by the miR172 target SMZ
    • 2701598, 19582143
    • Mathieu J, Yant LJ, Murdter F, Kuttner F, Schmid M. Repression of flowering by the miR172 target SMZ. PLoS Biol 2009, 7:e1000148. 10.1371/journal.pbio.1000148, 2701598, 19582143.
    • (2009) PLoS Biol , vol.7 , pp. e1000148
    • Mathieu, J.1    Yant, L.J.2    Murdter, F.3    Kuttner, F.4    Schmid, M.5
  • 28
    • 68749100821 scopus 로고    scopus 로고
    • The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
    • 2732587, 19703400
    • Wu G, Park MY, Conway SR, Wang JW, Weigel D, Poethig RS. The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis. Cell 2009, 138:750-759. 10.1016/j.cell.2009.06.031, 2732587, 19703400.
    • (2009) Cell , vol.138 , pp. 750-759
    • Wu, G.1    Park, M.Y.2    Conway, S.R.3    Wang, J.W.4    Weigel, D.5    Poethig, R.S.6
  • 29
    • 33846904347 scopus 로고    scopus 로고
    • The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings
    • 17217458
    • Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P. The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. Plant J 2007, 49:683-693. 10.1111/j.1365-313X.2006.02983.x, 17217458.
    • (2007) Plant J , vol.49 , pp. 683-693
    • Gandikota, M.1    Birkenbihl, R.P.2    Hohmann, S.3    Cardon, G.H.4    Saedler, H.5    Huijser, P.6
  • 31
    • 80055000264 scopus 로고    scopus 로고
    • Function and Evolution of a MicroRNA That Regulates a Ca(2+)-ATPase and Triggers the Formation of Phased Small Interfering RNAs in Tomato Reproductive Growth
    • 3203446, 21917547
    • Wang Y, Itaya A, Zhong XH, Wu Y, Zhang JF, van der Knaap E, Olmstead R, Qi YJ, Ding BA. Function and Evolution of a MicroRNA That Regulates a Ca(2+)-ATPase and Triggers the Formation of Phased Small Interfering RNAs in Tomato Reproductive Growth. Plant Cell 2011, 23:3185-3203. 10.1105/tpc.111.088013, 3203446, 21917547.
    • (2011) Plant Cell , vol.23 , pp. 3185-3203
    • Wang, Y.1    Itaya, A.2    Zhong, X.H.3    Wu, Y.4    Zhang, J.F.5    van der Knaap, E.6    Olmstead, R.7    Qi, Y.J.8    Ding, B.A.9
  • 32
    • 69249229480 scopus 로고    scopus 로고
    • Identification and characterization of 27 conserved microRNAs in citrus
    • 2729984, 19585144
    • Song CN, Fang JG, Li XY, Liu H, Chao CT. Identification and characterization of 27 conserved microRNAs in citrus. Planta 2009, 230:671-685. 10.1007/s00425-009-0971-x, 2729984, 19585144.
    • (2009) Planta , vol.230 , pp. 671-685
    • Song, C.N.1    Fang, J.G.2    Li, X.Y.3    Liu, H.4    Chao, C.T.5
  • 33
    • 77955375546 scopus 로고    scopus 로고
    • Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)
    • 2996959, 20626894
    • Song CN, Wang C, Zhang CQ, Korir NK, Yu HP, Ma ZQ, Fang JG. Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). BMC Genomics 2010, 11:431. 10.1186/1471-2164-11-431, 2996959, 20626894.
    • (2010) BMC Genomics , vol.11 , pp. 431
    • Song, C.N.1    Wang, C.2    Zhang, C.Q.3    Korir, N.K.4    Yu, H.P.5    Ma, Z.Q.6    Fang, J.G.7
  • 34
    • 84859430575 scopus 로고    scopus 로고
    • Identification of miRNAs and Their Target Genes Using Deep Sequencing and Degradome Analysis in Trifoliate Orange Poncirus trifoliate (L.) Raf
    • 21796478
    • Zhang JZ, Ai XY, Guo WW, Peng SA, Deng XX, Hu CG. Identification of miRNAs and Their Target Genes Using Deep Sequencing and Degradome Analysis in Trifoliate Orange Poncirus trifoliate (L.) Raf. Mol Biotechnol 2012, 51:44-57. 10.1007/s12033-011-9439-x, 21796478.
    • (2012) Mol Biotechnol , vol.51 , pp. 44-57
    • Zhang, J.Z.1    Ai, X.Y.2    Guo, W.W.3    Peng, S.A.4    Deng, X.X.5    Hu, C.G.6
  • 35
    • 77952611257 scopus 로고    scopus 로고
    • Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    • 2864249, 20398412
    • Xu Q, Liu YL, Zhu AD, Wu XM, Ye JL, Yu KQ, Guo WW, Deng XX. Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type. BMC Genomics 2010, 11:246. 10.1186/1471-2164-11-246, 2864249, 20398412.
    • (2010) BMC Genomics , vol.11 , pp. 246
    • Xu, Q.1    Liu, Y.L.2    Zhu, A.D.3    Wu, X.M.4    Ye, J.L.5    Yu, K.Q.6    Guo, W.W.7    Deng, X.X.8
  • 37
    • 33845688601 scopus 로고    scopus 로고
    • A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    • 1698448, 17182867
    • Rajagopalan R, Vaucheret H, Trejo J, Bartel DP. A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 2006, 20:3407-3425. 10.1101/gad.1476406, 1698448, 17182867.
    • (2006) Genes Dev , vol.20 , pp. 3407-3425
    • Rajagopalan, R.1    Vaucheret, H.2    Trejo, J.3    Bartel, D.P.4
  • 38
    • 53549106068 scopus 로고    scopus 로고
    • Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening
    • 2556272, 18653800
    • Moxon S, Jing RC, Szittya G, Schwach F, Pilcher RLR, Moulton V, Dalmay T. Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Res 2008, 18:1602-1609. 10.1101/gr.080127.108, 2556272, 18653800.
    • (2008) Genome Res , vol.18 , pp. 1602-1609
    • Moxon, S.1    Jing, R.C.2    Szittya, G.3    Schwach, F.4    Pilcher, R.L.R.5    Moulton, V.6    Dalmay, T.7
  • 39
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • 2583427, 18472421
    • Addo-Quaye C, Eshoo TW, Bartel DP, Axtell MJ. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008, 18:758-762. 10.1016/j.cub.2008.04.042, 2583427, 18472421.
    • (2008) Curr Biol , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.W.2    Bartel, D.P.3    Axtell, M.J.4
  • 40
    • 2442650370 scopus 로고    scopus 로고
    • The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • 415643, 15131082
    • Vaucheret H, Vazquez F, Crete P, Bartel DP. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 2004, 18:1187-1197. 10.1101/gad.1201404, 415643, 15131082.
    • (2004) Genes Dev , vol.18 , pp. 1187-1197
    • Vaucheret, H.1    Vazquez, F.2    Crete, P.3    Bartel, D.P.4
  • 41
    • 33645967150 scopus 로고    scopus 로고
    • AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1
    • 2323247, 16600876
    • Vaucheret H, Mallory AC, Bartel DP. AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell 2006, 22:129-136. 10.1016/j.molcel.2006.03.011, 2323247, 16600876.
    • (2006) Mol Cell , vol.22 , pp. 129-136
    • Vaucheret, H.1    Mallory, A.C.2    Bartel, D.P.3
  • 42
    • 36048980020 scopus 로고    scopus 로고
    • Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family
    • 2042213, 17916625
    • Allen RS, Li J, Stahle MI, Dubroue A, Gubler F, Millar AA. Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 family. Proc Natl Acad Sci U S A 2007, 104:16371-16376. 10.1073/pnas.0707653104, 2042213, 17916625.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 16371-16376
    • Allen, R.S.1    Li, J.2    Stahle, M.I.3    Dubroue, A.4    Gubler, F.5    Millar, A.A.6
  • 43
    • 33846926826 scopus 로고    scopus 로고
    • ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination
    • 17217461
    • Reyes JL, Chua NH. ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 2007, 49:592-606. 10.1111/j.1365-313X.2006.02980.x, 17217461.
    • (2007) Plant J , vol.49 , pp. 592-606
    • Reyes, J.L.1    Chua, N.H.2
  • 44
    • 84863012576 scopus 로고    scopus 로고
    • Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    • 3269859, 22158467
    • Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ. Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 2011, 23:4185-4207. 10.1105/tpc.111.089045, 3269859, 22158467.
    • (2011) Plant Cell , vol.23 , pp. 4185-4207
    • Jeong, D.H.1    Park, S.2    Zhai, J.3    Gurazada, S.G.4    De Paoli, E.5    Meyers, B.C.6    Green, P.J.7
  • 45
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • 15851028
    • Allen E, Xie Z, Gustafson AM, Carrington JC. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 2005, 121:207-221. 10.1016/j.cell.2005.04.004, 15851028.
    • (2005) Cell , vol.121 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 46
    • 84862232060 scopus 로고    scopus 로고
    • Apple miRNAs and tasiRNAs with novel regulatory networks
    • 3446319, 22704043
    • Xia R, Zhu H, An Y, Beers EP, Liu Z. Apple miRNAs and tasiRNAs with novel regulatory networks. Genome Biol 2012, 13:R47. 10.1186/gb-2012-13-6-r47, 3446319, 22704043.
    • (2012) Genome Biol , vol.13 , pp. R47
    • Xia, R.1    Zhu, H.2    An, Y.3    Beers, E.P.4    Liu, Z.5
  • 47
    • 84862809328 scopus 로고    scopus 로고
    • Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    • 3306195, 22353177
    • Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L. Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum). BMC Plant Biol 2012, 12:28. 10.1186/1471-2229-12-28, 3306195, 22353177.
    • (2012) BMC Plant Biol , vol.12 , pp. 28
    • Tang, S.1    Wang, Y.2    Li, Z.3    Gui, Y.4    Xiao, B.5    Xie, J.6    Zhu, Q.H.7    Fan, L.8
  • 49
    • 77957230850 scopus 로고    scopus 로고
    • Comprehensive Analysis of Simple Sequence Repeats in Pre-miRNAs
    • 20395311
    • Chen M, Tan ZY, Zeng GM, Peng J. Comprehensive Analysis of Simple Sequence Repeats in Pre-miRNAs. Mol Biol Evol 2010, 27:2227-2232. 10.1093/molbev/msq100, 20395311.
    • (2010) Mol Biol Evol , vol.27 , pp. 2227-2232
    • Chen, M.1    Tan, Z.Y.2    Zeng, G.M.3    Peng, J.4
  • 50
    • 0036897944 scopus 로고    scopus 로고
    • Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
    • 12453231
    • Li YC, Korol AB, Fahima T, Beiles A, Nevo E. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol 2002, 11:2453-2465. 10.1046/j.1365-294X.2002.01643.x, 12453231.
    • (2002) Mol Ecol , vol.11 , pp. 2453-2465
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Beiles, A.4    Nevo, E.5
  • 52
    • 77953489252 scopus 로고    scopus 로고
    • Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    • Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J. Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis. Plant J 2010, 62:960-976.
    • (2010) Plant J , vol.62 , pp. 960-976
    • Pantaleo, V.1    Szittya, G.2    Moxon, S.3    Miozzi, L.4    Moulton, V.5    Dalmay, T.6    Burgyan, J.7
  • 53
    • 0035032744 scopus 로고    scopus 로고
    • The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation
    • Takada S, Hibara K-I, Ishida T, Tasaka M. The CUP-SHAPED COTYLEDON1 gene of Arabidopsis regulates shoot apical meristem formation. Development 2001, 128:1127-1135.
    • (2001) Development , vol.128 , pp. 1127-1135
    • Takada, S.1    Hibara, K.-I.2    Ishida, T.3    Tasaka, M.4
  • 54
    • 2942697259 scopus 로고    scopus 로고
    • MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
    • 15202996
    • Mallory AC, Dugas DV, Bartel DP, Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 2004, 14:1035-1046. 10.1016/j.cub.2004.06.022, 15202996.
    • (2004) Curr Biol , vol.14 , pp. 1035-1046
    • Mallory, A.C.1    Dugas, D.V.2    Bartel, D.P.3    Bartel, B.4
  • 55
    • 33646231520 scopus 로고    scopus 로고
    • AtNAP, a NAC family transcription factor, has an important role in leaf senescence
    • 16640597
    • Guo Y, Gan S. AtNAP, a NAC family transcription factor, has an important role in leaf senescence. Plant J 2006, 46:601-612. 10.1111/j.1365-313X.2006.02723.x, 16640597.
    • (2006) Plant J , vol.46 , pp. 601-612
    • Guo, Y.1    Gan, S.2
  • 57
    • 84865798425 scopus 로고    scopus 로고
    • Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening
    • 3430993, 22888129
    • Shan W, Kuang J-F, Chen L, Xie H, Peng H-H, Xiao Y-Y, Li X-P, Chen W-X, He Q-G, Chen J-Y, Lu W-J. Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening. J Exp Bot 2012, 63:5171-5187. 10.1093/jxb/ers178, 3430993, 22888129.
    • (2012) J Exp Bot , vol.63 , pp. 5171-5187
    • Shan, W.1    Kuang, J.-F.2    Chen, L.3    Xie, H.4    Peng, H.-H.5    Xiao, Y.-Y.6    Li, X.-P.7    Chen, W.-X.8    He, Q.-G.9    Chen, J.-Y.10    Lu, W.-J.11
  • 58
    • 49349096535 scopus 로고    scopus 로고
    • Molecular cloning and characterization of a NAC-like gene in " navel" orange fruit response to postharvest stresses
    • Fan J, Gao X, Yang Y-W, Deng W, Li Z-G. Molecular cloning and characterization of a NAC-like gene in " navel" orange fruit response to postharvest stresses. Plant Mol Biol Rep 2007, 25:145-153.
    • (2007) Plant Mol Biol Rep , vol.25 , pp. 145-153
    • Fan, J.1    Gao, X.2    Yang, Y.-W.3    Deng, W.4    Li, Z.-G.5
  • 59
    • 70350037902 scopus 로고    scopus 로고
    • Identification and expression pattern of a novel NAM, ATAF, and CUC-like gene from Citrus sinensis Osbeck
    • Liu Y-Z, Baig M, Fan R, Ye J-L, Cao Y-C, Deng X-X. Identification and expression pattern of a novel NAM, ATAF, and CUC-like gene from Citrus sinensis Osbeck. Plant Mol Biol Rep 2009, 27:292-297.
    • (2009) Plant Mol Biol Rep , vol.27 , pp. 292-297
    • Liu, Y.-Z.1    Baig, M.2    Fan, R.3    Ye, J.-L.4    Cao, Y.-C.5    Deng, X.-X.6
  • 61
    • 38849140922 scopus 로고    scopus 로고
    • Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
    • 2225395, 17931426
    • Varkonyi-Gasic E, Wu RM, Wood M, Walton EF, Hellens RP. Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. Plant Methods 2007, 3:12. 10.1186/1746-4811-3-12, 2225395, 17931426.
    • (2007) Plant Methods , vol.3 , pp. 12
    • Varkonyi-Gasic, E.1    Wu, R.M.2    Wood, M.3    Walton, E.F.4    Hellens, R.P.5
  • 62
    • 84869093351 scopus 로고    scopus 로고
    • Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues
    • 22865195
    • Kou SJ, Wu XM, Liu Z, Liu YL, Xu Q, Guo WW. Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues. Plant Cell Rep 2012, 31:2151-2163. 10.1007/s00299-012-1325-x, 22865195.
    • (2012) Plant Cell Rep , vol.31 , pp. 2151-2163
    • Kou, S.J.1    Wu, X.M.2    Liu, Z.3    Liu, Y.L.4    Xu, Q.5    Guo, W.W.6
  • 63
    • 34248653184 scopus 로고    scopus 로고
    • Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
    • 17487191
    • Sparkes IA, Runions J, Kearns A, Hawes C. Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nat Protoc 2006, 1:2019-2025. 10.1038/nprot.2006.286, 17487191.
    • (2006) Nat Protoc , vol.1 , pp. 2019-2025
    • Sparkes, I.A.1    Runions, J.2    Kearns, A.3    Hawes, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.