Identification of Mycobacterium species in direct respiratory specimens using reverse blot hybridisation assay

International Journal of Tuberculosis and Lung Disease

Volumn 18, Issue 9, 2014, Pages 1114-1120

  Wang, H Y ^a   Bang, H ^b   Kim, S ^b,c   Koh, Won Jung ^d   Lee, H ^a  

^a Wonju Eco Environmental Technology Center   (South Korea)

^b Yonsei University Wonju   (South Korea)

^c Yonsei University   (South Korea)

^d Sungkyunkwan University School of Medicine   (South Korea)

Author keywords

Molecular diagnosis; Mycobacterium tuberculosis; Non tuberculous mycobacteria; PCR REBA; PCR RFLP; PRA

Indexed keywords

RNA POLYMERASE BETA SUBUNIT; BACTERIAL DNA;

ACID FAST BACTERIUM; ADULT; AGED; ARTICLE; ATYPICAL MYCOBACTERIUM; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; DIAGNOSTIC TEST ACCURACY STUDY; FEMALE; GENE; HYBRIDIZATION; INTERMETHOD COMPARISON; MALE; MIXED INFECTION; MYCOBACTERIUM; MYCOBACTERIUM ABSCESSUS; MYCOBACTERIUM AUBAGNENSE; MYCOBACTERIUM AVIUM; MYCOBACTERIUM CELATUM; MYCOBACTERIUM CHELONEI; MYCOBACTERIUM FORTUITUM; MYCOBACTERIUM GENAVENSE; MYCOBACTERIUM GORDONAE; MYCOBACTERIUM INTRACELLULARE; MYCOBACTERIUM KANSASII; MYCOBACTERIUM MARINUM; MYCOBACTERIUM MASSILIENSE; MYCOBACTERIUM MUCOGENICUM; MYCOBACTERIUM NONCHROMOGENICUM; MYCOBACTERIUM SCROFULACEUM; MYCOBACTERIUM SIMIAE; MYCOBACTERIUM SZULGAI; MYCOBACTERIUM TERRAE; MYCOBACTERIUM TUBERCULOSIS; MYCOBACTERIUM ULCERANS; NOCARDIA FARCINICA; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESPIRATORY SYSTEM; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; REVERSE BLOT HYBRIDIZATION ASSAY; RPOB GENE; SEQUENCE ANALYSIS; SPUTUM; CLASSIFICATION; COMPARATIVE STUDY; EARLY DIAGNOSIS; EVALUATION STUDY; GENETICS; HUMAN; IMMUNOBLOTTING; ISOLATION AND PURIFICATION; MICROBIOLOGICAL EXAMINATION; MICROBIOLOGY; MIDDLE AGED; MOLECULAR DIAGNOSIS; PREDICTIVE VALUE; REPRODUCIBILITY; TUBERCULOSIS, PULMONARY; VERY ELDERLY;

AGED; AGED, 80 AND OVER; BACTERIOLOGICAL TECHNIQUES; DNA, BACTERIAL; EARLY DIAGNOSIS; FEMALE; HUMANS; IMMUNOBLOTTING; MALE; MIDDLE AGED; MOLECULAR DIAGNOSTIC TECHNIQUES; MYCOBACTERIUM; POLYMERASE CHAIN REACTION; PREDICTIVE VALUE OF TESTS; REPRODUCIBILITY OF RESULTS; SPUTUM; TUBERCULOSIS, PULMONARY;

EID: 84906687937     PISSN: 10273719     EISSN: None     Source Type: Journal    
DOI: 10.5588/ijtld.14.0140     Document Type: Article

References (28)

1. World Health Organization. Global tuberculosis report 2013. WHO/HTM/TB/2013.15. Geneva, Switzerland: WHO, 2013. http://www.who.int/tb/ publications/global-report/en/ Accessed May 2014
2. Griffith D E, Aksamit T, Brown-Elliott B A, et al. An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 2007; 175: 367-416.
3. Prevots D R, Shaw P A, Strickland D, et al. Nontuberculous mycobacterial lung disease prevalence at four integrated health care delivery systems. Am J Respir Crit Care Med 2010; 182: 970-976.
4. Ryoo S W, Shin S, Shim M S, et al. Spread of nontuberculous mycobacteria from 1993 to 2006 in Koreans. J Clin Lab Anal 2008; 22: 415-420.
5. Koh W J, Chang B, Jeong B H, et al. Increasing recovery of nontuberculous mycobacteria from respiratory specimens over a 10-year period in a tertiary referral hospital in South Korea. Tuberc Respir Dis (Seoul) 2013; 75: 199-204.
6. Lee S K, Lee E J, Kim S K, et al. Changing epidemiology of nontuberculous mycobacterial lung disease in South Korea. Scand J Infect Dis 2012; 44: 733-738.
7. Gil-Setas A, Torroba L, Fernandez J L, et al. Evaluation of the MB/BacT system compared with Middlebrook 7H11 and Löwenstein-Jensen media for detection and recovery of mycobacteria from clinical specimens. Clin Microbiol Infect 2004; 10: 224-228.
8. Christianson S, Wolfe J, Soualhine H, Sharma M K. Comparison of repetitive-sequence-based polymerase chain reaction with random amplified polymorphic DNA analysis for rapid genotyping of nontuberculosis mycobacteria. Can J Microbiol 2012; 58: 953-964.
9. Ye F, Chen Y, He D, et al. Detection of Mycobacterium tuberculosis complex in paraffin-embedded tissues by real-time fluorescent quantitative polymerase chain reaction. Zhonghua Bing Li Xue Za Zhi. 2013; 42: 534-537. [Chinese]
10. Cho S Y, Kim M J, Suh J T, Lee H J. Comparison of diagnostic performance of three real-time PCR kits for detecting Mycobacterium species. Yonsei Med J 2011; 52: 301-306.
11. Makinen J, Marjamaki M, Marttila H, Soini H. Evaluation of a novel strip test Geno Type Mycobacterium CM/AS, for species identification of mycobacterial cultures. Clin Microbiol Infect 2006; 12: 481-483.
12. Padilla Padilla E, González V, Manterola J M, et al. Comparative evaluation of the new version of the INNO-LiPA mycobacteria and genotype Mycobacterium assays for identification of Mycobacterium species from MB/BacT liquid cultures artificially inoculated with mycobacterial strains. J Clin Microbiol 2004; 42: 3083-3088.
13. Sanguinetti M, Posteraro B, Ardito F, et al. Routine use of PCR-reverse cross-blot hybridization assay for rapid identification of Mycobacterium species growing in liquid media. J Clin Microbiol 1998; 36: 1530-1533.
14. Park H, Jang H, Song E, et al. Detection and genotyping of Mycobacterium species from clinical isolates and specimens by oligonucleotide array. J Clin Microbial 2005; 43: 1782-1788.
15. Bannalikar A S, Verma R. Detection of Mycobacterium avium & M. tuberculosis from human sputum cultures by PCR-RFLP analysis of hsp65 gene & pncA PCR. Indian J Med Res 2006; 123: 165-172.
16. Aravindhan V, Sulochana S, Narayanan S, et al. Identification &differentiation of Mycobacterium avium & M. intracellulare by PCR-RFLP assay using the groES gene. Indian J Med Res 2007; 126: 575-579.
17. Lee H Y, Park H J, Cho S N, et al. Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol 2000; 38: 2966-2971.
18. Suffys P N, da Silva Rocha A, de Oliveira M, et al. Rapid identification of Mycobacteria to the species level using INNOLiPA mycobacteria, a reverse hybridization assay. J Clin Microbiol 2001; 39: 4477-4482.
19. Diagnostic Standards and Classification of Tuberculosis in Adults and Children. This official statement of the American Thoracic Society and the Centers for Disease Control and Prevention was adopted by the ATS Board of Directors, July 1999. This statement was endorsed by the Council of the Infectious Disease Society of America, September 1999. Am J Respir Crit Care Med 2000; 161: 1376-1395.
20. Alteri C J, Xicohtencatl-Cortes J, Hess S, et al. Mycobacterium tuberculosis produces pili during human infection. Microbiology 2007; 104: 5145-5150.
21. Miguez-Burbano M J, Flores M, Ashkin D, Rodriguez A, et al. Non-tuberculous mycobacteria disease as a cause of hospitalization in HIV-infected subjects. Int J Infect Dis 2006; 10: 47-55.
22. Chae D R, Kim Y I, Kee S J, et al. The impact of the 2007 ATS/IDSA diagnostic criteria for nontuberculous mycobacterial disease on the diagnosis of nontuberculous mycobacterial lung disease. Respiration 2011; 82: 124-129.
23. Streit E, Millet J, Rastogi N. Nontuberculous mycobacteria in Guadeloupe, Martinique, and French Guiana from 1994 to 2012. Tuberc Res Treat 2013; 2013: 472041. Epub 2013 Dec 18.
24. Koh W J, Kwon O J, Jeon K, et al. Clinical significance of nontuberculous mycobacteria isolated from respiratory specimens in Korea. Chest 2006; 129: 341-348.
25. Hoefsloot W, van Ingen J, Andrejak C, et al. The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples: an NTM-NET collaborative study. Eur Respir J 2013; 42: 1604-1613.
26. Jeon K, Kwon O J, Lee N Y, et al. Antibiotic treatment of Mycobacterium abscessus lung disease: a retrospective analysis of 65 patients. Am J Respir Crit Care Med 2009; 180: 896-902.
27. Kim HY, Kook Y, Yun Y J, et al. Proportions of Mycobacterium massiliense and Mycobacterium bolletii strains among Korean Mycobacterium chelonae-Mycobacterium abscessus group isolates. J Clin Microbiol 2008; 46: 3384-3390.
28. Koh W J, Jeon K, Lee N Y, et al. Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus. Am J Respir Crit Care Med 2011; 183: 405-410.