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Volumn 30, Issue 16, 2014, Pages 2360-2366

A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; CELL DIFFERENTIATION; DNA METHYLATION; ENDOMETRIUM TUMOR; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC EPIGENESIS; GENETICS; HUMAN; HUMAN GENOME; PROTEIN ANALYSIS; TRANSCRIPTION INITIATION SITE; VALIDATION STUDY;

EID: 84906251108     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu316     Document Type: Article
Times cited : (125)

References (22)
  • 1
    • 67651176095 scopus 로고    scopus 로고
    • The progesterone receptor coactivator hic-5 is involved in the pathophysiology of endometriosis
    • Aghajanova, L. et al. (2009) The progesterone receptor coactivator Hic-5 is involved in the pathophysiology of endometriosis. Endocrinology, 150, 3863-3870.
    • (2009) Endocrinology , vol.150 , pp. 3863-3870
    • Aghajanova, L.1
  • 2
    • 34249689634 scopus 로고    scopus 로고
    • Blood and lymphatic endothelial cell-specific differentiation programs are stringently controlled by the tissue environment
    • Amatschek, S. et al. (2007) Blood and lymphatic endothelial cell-specific differentiation programs are stringently controlled by the tissue environment. Blood, 109, 4777-4785.
    • (2007) Blood , vol.109 , pp. 4777-4785
    • Amatschek, S.1
  • 3
    • 84865114743 scopus 로고    scopus 로고
    • DNA methylation regulates lineage-specifying genes in primary lymphatic and blood endothelial cells
    • Bronneke, S. et al. (2012) DNA methylation regulates lineage-specifying genes in primary lymphatic and blood endothelial cells. Angiogenesis, 15, 317-329.
    • (2012) Angiogenesis , vol.15 , pp. 317-329
    • Bronneke, S.1
  • 4
    • 78651332286 scopus 로고    scopus 로고
    • Pathway commons, a web resource for biological pathway data
    • Cerami, E.G. et al. (2011) Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res., 39, D685-D690.
    • (2011) Nucleic Acids Res , vol.39
    • Cerami, E.G.1
  • 5
    • 39749108733 scopus 로고    scopus 로고
    • High-resolution acgh and expression profiling identifies a novel genomic subtype of er negative breast cancer
    • Chin, S.F. et al. (2007) High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer. Genome Biol., 8, R215.
    • (2007) Genome Biol , vol.8
    • Chin, S.F.1
  • 6
    • 35348891430 scopus 로고    scopus 로고
    • Network-based classification of breast cancer metastasis
    • Chuang, H.Y. et al. (2007) Network-based classification of breast cancer metastasis. Mol. Syst. Biol., 3, 140.
    • (2007) Mol. Syst. Biol , vol.3 , pp. 140
    • Chuang, H.Y.1
  • 7
    • 29244469466 scopus 로고    scopus 로고
    • The epigenetic progenitor origin of human cancer
    • Feinberg, A.P. et al. (2006) The epigenetic progenitor origin of human cancer. Nat. Rev. Genet., 7, 21-33.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 21-33
    • Feinberg, A.P.1
  • 8
    • 0028001087 scopus 로고
    • Methylation of the oestrogen receptor cpg island links ageing and neoplasia in human colon
    • Issa, J.P. et al. (1994)Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon. Nat. Genet., 7, 536-540.
    • (1994) Nat. Genet , vol.7 , pp. 536-540
    • Issa, J.P.1
  • 9
    • 84889021277 scopus 로고    scopus 로고
    • Role of dna methylation and epigenetic silencing of hand2 in endometrial cancer development
    • Jones, A. et al. (2013) Role of DNA methylation and epigenetic silencing of HAND2 in endometrial cancer development. PLoS Med., 10, e1001551.
    • (2013) PLoS Med , vol.10
    • Jones, A.1
  • 10
    • 84877254190 scopus 로고    scopus 로고
    • Integrated genomic characterization of endometrial carcinoma
    • Kandoth, C. et al. (2013) Integrated genomic characterization of endometrial carcinoma. Nature, 497, 67-73.
    • (2013) Nature , vol.497 , pp. 67-73
    • Kandoth, C.1
  • 11
    • 84873939792 scopus 로고    scopus 로고
    • Identification and functional validation of hpv-mediated hypermethylation in head and neck squamous cell carcinoma
    • Lechner, M. et al. (2013) Identification and functional validation of HPV-mediated hypermethylation in head and neck squamous cell carcinoma. Genome Med., 5, 15.
    • (2013) Genome Med , vol.5 , pp. 15
    • Lechner, M.1
  • 12
    • 37149014854 scopus 로고    scopus 로고
    • Differential gene expression of primary cultured lymphatic and blood vascular endothelial cells
    • Nelson, G.M. et al. (2007) Differential gene expression of primary cultured lymphatic and blood vascular endothelial cells. Neoplasia, 9, 1038-1045.
    • (2007) Neoplasia , vol.9 , pp. 1038-1045
    • Nelson, G.M.1
  • 13
    • 77953469917 scopus 로고    scopus 로고
    • Epigenetics as a unifying principle in the aetiology of complex traits and diseases
    • Petronis, A. (2010) Epigenetics as a unifying principle in the aetiology of complex traits and diseases. Nature, 465, 721-727.
    • (2010) Nature , vol.465 , pp. 721-727
    • Petronis, A.1
  • 14
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan, V.K. et al. (2011) Epigenome-wide association studies for common human diseases. Nat. Rev. Genet., 12, 529-541.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 529-541
    • Rakyan, V.K.1
  • 16
    • 79958754527 scopus 로고    scopus 로고
    • Validation of a dna methylation microarray for 450, 000 cpg sites in the human genome
    • Sandoval, J. et al. (2011) Validation of a DNA methylation microarray for 450, 000 CpG sites in the human genome. Epigenetics, 6, 692-702.
    • (2011) Epigenetics , vol.6 , pp. 692-702
    • Sandoval, J.1
  • 17
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth, G.K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3, Article3.
    • (2004) Stat. Appl. Genet. Mol. Biol , vol.3
    • Smyth, G.K.1
  • 18
    • 84858828509 scopus 로고    scopus 로고
    • Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation
    • Teschendorff, A.E. et al. (2012) Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation. Genome Med., 4, 24.
    • (2012) Genome Med , vol.4 , pp. 24
    • Teschendorff, A.E.1
  • 19
    • 84872564830 scopus 로고    scopus 로고
    • A beta-mixture quantile normalization method for correcting probe design bias in illumina infinium 450k dna methylation data
    • Teschendorff, A.E. et al. (2013) A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450k DNA methylation data. Bioinformatics, 29, 189-196.
    • (2013) Bioinformatics , vol.29 , pp. 189-196
    • Teschendorff, A.E.1
  • 20
    • 84882454737 scopus 로고    scopus 로고
    • An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways
    • West, J. et al. (2013) An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci. Rep., 3, 1630.
    • (2013) Sci. Rep , vol.3 , pp. 1630
    • West, J.1
  • 21
    • 84859931424 scopus 로고    scopus 로고
    • A comparison of feature selection and classification methods in dna methylation studies using the illumina infinium platform
    • Zhuang, J. et al. (2012) A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform. BMC Bioinformatics, 13, 59.
    • (2012) BMC Bioinformatics , vol.13 , pp. 59
    • Zhuang, J.1
  • 22
    • 84882884517 scopus 로고    scopus 로고
    • Charting a dynamic dna methylation landscape of the human genome
    • Ziller, M.J. et al. (2013) Charting a dynamic DNA methylation landscape of the human genome. Nature, 500, 477-481.
    • (2013) Nature , vol.500 , pp. 477-481
    • Ziller, M.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.