-
1
-
-
58149185141
-
Genbank
-
doi: 10.1093/nar/gkn723
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., and Sayers, E. W. (2009). Genbank. Nucleic Acids Res. 37, D26-D31. doi: 10.1093/nar/gkn723
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
2
-
-
80155206416
-
AIGO: towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations
-
doi: 10.1186/1471-2105-12-431
-
Defoin-Piatel, M., Hindle, M. M., Lysenko, A., Powers, S. J., Habash, D. Z., Rawlings, C. J., et al. (2011). AIGO: towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations. BMC Bioinformatics 12:431. doi: 10.1186/1471-2105-12-431
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 431
-
-
Defoin-Piatel, M.1
Hindle, M.M.2
Lysenko, A.3
Powers, S.J.4
Habash, D.Z.5
Rawlings, C.J.6
-
3
-
-
0034308142
-
Practical limits of function prediction
-
doi: 10.1002/1097-0134(20001001)41:1<98::AID-PROT120>3.0.CO;2-S
-
Devos, D., and Valencia, A. (2000). Practical limits of function prediction. Proteins 41, 98-107. doi: 10.1002/1097-0134(20001001)41:1<98::AID-PROT120>3.0.CO;2-S
-
(2000)
Proteins
, vol.41
, pp. 98-107
-
-
Devos, D.1
Valencia, A.2
-
4
-
-
84862192725
-
The UniProt-GO Annotation database in 2011
-
doi: 10.1093/nar/gkr1048
-
Dimmer, E. C., Huntley, R. P., Alam-Faruque, Y., Sawford, T., O'Donovan, C., and Martin, M. J. (2012). The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40, D565-D570. doi: 10.1093/nar/gkr1048
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dimmer, E.C.1
Huntley, R.P.2
Alam-Faruque, Y.3
Sawford, T.4
O'Donovan, C.5
Martin, M.J.6
-
5
-
-
84860501618
-
A procedure for assessing GO annotation consistency
-
doi: 10.1093/bioinformatics/bti1019
-
Dolan, M. E., Ni, L., Camon, E., and Blake, J. A. (2005). A procedure for assessing GO annotation consistency. Bioinformatics 21(Suppl. 1), i136-i143. doi: 10.1093/bioinformatics/bti1019
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Dolan, M.E.1
Ni, L.2
Camon, E.3
Blake, J.A.4
-
6
-
-
43749114499
-
Using the Ensembl genome server to browse genomic sequence data
-
Chapter 1:Unit 1, doi: 10.1002/0471250953.bi0115s16
-
Fernández-Suárez, X. M., and Schuster, M. K. (2010). Using the Ensembl genome server to browse genomic sequence data. Curr. Protoc. Bioinformatics. Chapter 1:Unit 1.15. doi: 10.1002/0471250953.bi0115s16
-
(2010)
Curr. Protoc. Bioinformatics
, pp. 15
-
-
Fernández-Suárez, X.M.1
Schuster, M.K.2
-
7
-
-
75549089335
-
Ensembl's 10th year
-
doi: 10.1093/nar/gkp972
-
Flicek, P., Aken, B. L., Ballester, B., Beal, K., Bragin, E., Brent, S., et al. (2010). Ensembl's 10th year. Nucleic Acids Res. 38, D557-D562. doi: 10.1093/nar/gkp972
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Flicek, P.1
Aken, B.L.2
Ballester, B.3
Beal, K.4
Bragin, E.5
Brent, S.6
-
8
-
-
84859699831
-
The gene ontology: enhancements for 2011
-
GO-Consortium., doi: 10.1093/nar/gkr1028
-
GO-Consortium. (2012). The gene ontology: enhancements for 2011. Nucleic Acids Res. 40, D559-D564. doi: 10.1093/nar/gkr1028
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
-
9
-
-
66449084442
-
Infrastructure for the life sciences: design and implementation of the UniProt website
-
doi: 10.1186/1471-2105-10-136
-
Jain, E., Bairoch, A., Duvaud, S., Phan, I., Redaschi, N., Suzek, B. E., et al. (2009). Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10:136. doi: 10.1186/1471-2105-10-136
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
Bairoch, A.2
Duvaud, S.3
Phan, I.4
Redaschi, N.5
Suzek, B.E.6
-
10
-
-
84855731050
-
Ensembl biomarts: a hub for data retrieval across taxonomic space
-
bar030. doi: 10.1093/database/bar030
-
Kinsella, R. J., Kähäri, A., Haider, S., Zamora, J., Proctor, G., Spudich, G., et al. (2011). Ensembl biomarts: a hub for data retrieval across taxonomic space. Database 2011:bar030. doi: 10.1093/database/bar030
-
(2011)
Database
, vol.2011
-
-
Kinsella, R.J.1
Kähäri, A.2
Haider, S.3
Zamora, J.4
Proctor, G.5
Spudich, G.6
-
11
-
-
84860362791
-
Using the underlying biological organization of the Mycobacterium tuberculosis functional network for protein function prediction
-
doi: 10.1016/j.meegid.2011.10.027
-
Mazandu, G. K., and Mulder, N. J. (2011). Using the underlying biological organization of the Mycobacterium tuberculosis functional network for protein function prediction. Infect. Genet. Evol. 12, 922-932. doi: 10.1016/j.meegid.2011.10.027
-
(2011)
Infect. Genet. Evol.
, vol.12
, pp. 922-932
-
-
Mazandu, G.K.1
Mulder, N.J.2
-
12
-
-
84862297314
-
A topology-based metric for measuring term similarity in the Gene Ontology
-
doi: 10.1155/2012/975783
-
Mazandu, G. K., and Mulder, N. J. (2012). A topology-based metric for measuring term similarity in the Gene Ontology. Adv. Bioinformatics 2012:975783. doi: 10.1155/2012/975783
-
(2012)
Adv. Bioinformatics
, vol.2012
, pp. 975783
-
-
Mazandu, G.K.1
Mulder, N.J.2
-
13
-
-
84884505519
-
DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures
-
doi: 10.1186/1471-2105-14-284
-
Mazandu, G. K., and Mulder, N. J. (2013a). DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures. BMC Bioinformatics 14:284. doi: 10.1186/1471-2105-14-284
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 284
-
-
Mazandu, G.K.1
Mulder, N.J.2
-
14
-
-
84884726933
-
Information content-based gene ontology semantic similarity approaches: toward a unified framework theory
-
doi: 10.1155/2013/292063
-
Mazandu, G. K., and Mulder, N. J. (2013b). Information content-based gene ontology semantic similarity approaches: toward a unified framework theory. BioMed Res. Int. 2013:292063. doi: 10.1155/2013/292063
-
(2013)
BioMed Res. Int
, vol.2013
, pp. 292063
-
-
Mazandu, G.K.1
Mulder, N.J.2
-
15
-
-
79959828326
-
Testing the ortholog conjecture with comparative functional genomic data from mammals
-
doi: 10.1371/journal.pcbi.1002073
-
Nehrt, N. L., Clark, W. T., Radivojac, P., and Hahn, M. W. (2011). Testing the ortholog conjecture with comparative functional genomic data from mammals. PLoS Comput. Biol. 7:e1002073. doi: 10.1371/journal.pcbi.1002073
-
(2011)
PLoS Comput. Biol
, vol.7
-
-
Nehrt, N.L.1
Clark, W.T.2
Radivojac, P.3
Hahn, M.W.4
-
16
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
doi: 10.1093/nar/gki025
-
Pruitt, K. D., Tatusova, T., and Maglott, D. R. (2005). NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 33(Suppl. 1), D501-D504. doi: 10.1093/nar/gki025
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
17
-
-
58149200954
-
Database resources of the National Center for Biotechnology Information
-
doi: 10.1093/nar/gkp382
-
Sayers, E. W., Barrett, T., Benson, D. A., Bryant, S. H., Canese, K., Chetvernin, V., et al. (2009). Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37, D5-D15. doi: 10.1093/nar/gkp382
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
-
18
-
-
77951962908
-
Touring Ensembl: a practical guide to genome browsing
-
doi: 10.1186/1471-2164-11-295
-
Spudich, G. M., and Fernández-Suárez, X. M. (2010). Touring Ensembl: a practical guide to genome browsing. BMC Genomics 11:295. doi: 10.1186/1471-2164-11-295
-
(2010)
BMC Genomics
, vol.11
, pp. 295
-
-
Spudich, G.M.1
Fernández-Suárez, X.M.2
-
19
-
-
68249085263
-
The gene ontology's reference genome project: a unified framework for functional annotation across species
-
The Reference Genome Group of the Gene Ontology Consortium., doi: 10.1371/journal.pcbi.1000431
-
The Reference Genome Group of the Gene Ontology Consortium. (2009). The gene ontology's reference genome project: a unified framework for functional annotation across species. PLoS Comput. Biol. 5:e1000431. doi: 10.1371/journal.pcbi.1000431
-
(2009)
PLoS Comput. Biol
, vol.5
-
-
-
20
-
-
58149199579
-
FlyBase: enhancing Drosophila Gene Ontology annotations
-
doi: 10.1093/nar/gkn788
-
Tweedie, S., Ashburner, M., Falls, K., Leyland, P., McQuilton, P., Marygold, S., et al. (2008). FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res. 37, D555-D559. doi: 10.1093/nar/gkn788
-
(2008)
Nucleic Acids Res.
, vol.37
-
-
Tweedie, S.1
Ashburner, M.2
Falls, K.3
Leyland, P.4
McQuilton, P.5
Marygold, S.6
-
21
-
-
75849153303
-
The universal protein resource (UniProt) in 2010
-
UniProt-Consortium., doi: 10.1093/nar/gkp846
-
UniProt-Consortium. (2010). The universal protein resource (UniProt) in 2010. Nucleic Acids Res. 38, D142-D148. doi: 10.1093/nar/gkp846
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
|